Pavel V Baranov

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 41

Top Topics

Pluripotent Stem Cells

Dna Methylation

Top Venues

Genome research

Nature communications

Nucleic acids research

Wellcome open research

This page only lists publications with an associated author ORCID identifier.

Publications

Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 15 (1) (2024)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 15 (1) (2024)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 15 (1) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 15 (1) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research 34 (4) (2024)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome decision graphs for the representation of eukaryotic RNA translation complexity. Genome research (2024)
Sofya A Gaydukova, Mikhail A Moldovan, Adriana Vallesi, Stephen M Heaphy, John F Atkins, Mikhail S Gelfand, Pavel V Baranov
Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution. Proceedings of the National Academy of Sciences of the United States of America 120 (22) (2023)
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts. Nucleic acids research 51 (1) (2023)
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts. Nucleic acids research 51 (1) (2023)
Jack A S Tierney, Michał Świrski, Håkon Tjeldnes, Jonathan M Mudge, Joanna Kufel, Nicola Whiffin, Eivind Valen, Pavel V Baranov
Ribosome Decision Graphs for the Representation of Eukaryotic RNA Translation Complexity. bioRxiv : the preprint server for biology (2023)
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts. Nucleic acids research 51 (1) (2023)
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts. Nucleic acids research 51 (1) (2023)
Yousuf A Khan, Gary Loughran, Anna-Lena Steckelberg, Katherine Brown, Stephen J Kiniry, Hazel Stewart, Pavel V Baranov, Jeffrey S Kieft, Andrew E Firth, John F Atkins
Evaluating ribosomal frameshifting in CCR5 mRNA decoding. Nature 604 (7906) (2022)
Gary Loughran, Xiang Li, Sinead O'Loughlin, John F Atkins, Pavel V Baranov
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts. Nucleic acids research (2022)
Martina M Yordanova, Pavel V Baranov
A frameshift in time. eLife 11 (2022)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 13 (1) (2022)
Jonathan M Mudge, Jorge Ruiz-Orera, John R Prensner, Marie A Brunet, Ferriol Calvet, Irwin Jungreis, Jose Manuel Gonzalez, Michele Magrane, Cholsoon Jang, Jana Felicitas Schulz, Yucheng T Yang, M Mar Albà, Julie L Aspden, Pavel V Baranov, Ariel Alejandro Bazzini, Elspeth A Bruford, Maria Jesus Martin, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jin Chen, Juan Pablo Couso, Eric W Deutsch, Paul Flicek, Adam Frankish, Mark Gerstein, Norbert Hübner, Nicholas T Ingolia, Manolis Kellis, Gerben Menschaert, Robert L Moritz, Uwe Ohler, Xavier Roucou, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch
Standardized annotation of translated open reading frames. Nature biotechnology 40 (7) (2022)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 13 (1) (2022)
Dmitry E Andreev, Gary Loughran, Alla D Fedorova, Maria S Mikhaylova, Ivan N Shatsky, Pavel V Baranov
Non-AUG translation initiation in mammals. Genome biology 23 (1) (2022)
Fabio Hedayioglu, Emma J Mead, Patrick B F O'Connor, Matas Skiotys, Owen James Sansom, Giovanna R Mallucci, Anne E Willis, Pavel V Baranov, Christopher Mark Smales, Tobias von der Haar
Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles. Nucleic acids research 50 (19) (2022)
Martina M Yordanova, Gary Loughran, John F Atkins, Pavel V Baranov
Stop codon readthrough contexts influence reporter expression differentially depending on the presence of an IRES. Wellcome open research 5 (2022)
Angela Coral-Medina, Darren A Fenton, Javier Varela, Pavel V Baranov, Carole Camarasa, John P Morrissey
The evolution and role of the periplasmic asparaginase Asp3 in yeast. FEMS yeast research 22 (1) (2022)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 13 (1) (2022)
Alla D Fedorova, Stephen J Kiniry, Dmitriy E Andreev, Jonathan M Mudge, Pavel V Baranov
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature communications 13 (1) (2022)
Martina M Yordanova, Gary Loughran, John F Atkins, Pavel V Baranov
Stop codon readthrough contexts influence reporter expression differentially depending on the presence of an IRES. Wellcome open research 5 (2021)
Stephen J Kiniry, Ciara E Judge, Audrey M Michel, Pavel V Baranov
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. Nucleic acids research 49 (W1) (2021)
Gary Loughran, Alexander V Zhdanov, Maria S Mikhaylova, Fedor N Rozov, Petr N Datskevich, Sergey I Kovalchuk, Marina V Serebryakova, Stephen J Kiniry, Audrey M Michel, Patrick B F O'Connor, Dmitri B Papkovsky, John F Atkins, Pavel V Baranov, Ivan N Shatsky, Dmitry E Andreev
Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF. Proceedings of the National Academy of Sciences of the United States of America 117 (40) (2020)
Martina M Yordanova, Gary Loughran, John F Atkins, Pavel V Baranov
Stop codon readthrough contexts influence reporter expression differentially depending on the presence of an IRES. Wellcome open research 5 (2020)
Vijendra Sharma, Rapita Sood, Abdessattar Khlaifia, Mohammad Javad Eslamizade, Tzu-Yu Hung, Danning Lou, Azam Asgarihafshejani, Maya Lalzar, Stephen J Kiniry, Matthew P Stokes, Noah Cohen, Alissa J Nelson, Kathryn Abell, Anthony P Possemato, Shunit Gal-Ben-Ari, Vinh T Truong, Peng Wang, Adonis Yiannakas, Fatemeh Saffarzadeh, Augusto Claudio Cuello, Karim Nader, Alexandre Rosa Campos, Mauro Costa-Mattioli, Pavel V Baranov, Albert Quintana, Elisenda Sanz, Arkady Khoutorsky, Jean-Claude Lacaille, Kobi Rosenblum, Nahum Sonenberg
eIF2α controls memory consolidation via excitatory and somatostatin neurons. Nature 586 (7829) (2020)
Maria S Benitez-Cantos, Martina M Yordanova, Patrick B F O'Connor, Alexander V Zhdanov, Sergey I Kovalchuk, Dmitri B Papkovsky, Dmitry E Andreev, Pavel V Baranov
Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context. Genome research 30 (7) (2020)
Stephen J Kiniry, Audrey M Michel, Pavel V Baranov
Computational methods for ribosome profiling data analysis. Wiley interdisciplinary reviews. RNA 11 (3) (2019)
Romika Kumari, Audrey M Michel, Pavel V Baranov
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data. RNA (New York, N.Y.) 24 (10) (2018)
Dmitry E Andreev, Maxim Arnold, Stephen J Kiniry, Gary Loughran, Audrey M Michel, Dmitrii Rachinskii, Pavel V Baranov
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response. eLife 7 (2018)
Pavel V Baranov, Gary Loughran
Catch me if you can: trapping scanning ribosomes in their footsteps. Nature structural & molecular biology 23 (8) (2017)
Stephanie J Davies, James Ryan, Patrick B F O'Connor, Elaine Kenny, Derek Morris, Pavel V Baranov, Rosemary O'Connor, Tommie V McCarthy
Itm2a silencing rescues lamin A mediated inhibition of 3T3-L1 adipocyte differentiation. Adipocyte 6 (4) (2017)
Pavel V Baranov, Audrey M Michel
Illuminating translation with ribosome profiling spectra. Nature methods 13 (2) (2016)