Nicholas T Ingolia

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 41

Top Venues

bioRxiv : the preprint server for biology

eLife

Nature chemical biology

Life science alliance

University of California Berkeley

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Berkeley

United States

Assistant Professor :: Molecular & Cell Biology

Carnegie Institution Department of Embryology

United States

Staff member (PI) :: Embryology

University of California San Francisco

United States

Post-doc :: Cellular and Molecular Pharmacology

Education History

Harvard University

United States

PHD :: Molecular & Cell Biology

Publications

Jinyoung Kim, Ryan Y Muller, Eliana R Bondra, Nicholas T Ingolia
CRISPRi with barcoded expression reporters dissects regulatory networks in human cells. bioRxiv : the preprint server for biology (2024)
Emily N Powers, Naohiro Kuwayama, Camila Sousa, Kendra Reynaud, Marko Jovanovic, Nicholas T Ingolia, Gloria A Brar
Dbp1 is a low performance paralog of RNA helicase Ded1 that drives impaired translation and heat stress response. bioRxiv : the preprint server for biology (2024)
Yuichi Shichino, Tomokazu Yamaguchi, Kazuhiro Kashiwagi, Mari Mito, Mari Takahashi, Takuhiro Ito, Nicholas T Ingolia, Keiji Kuba, Shintaro Iwasaki
eIF4A1 enhances LARP1-mediated translational repression during mTORC1 inhibition. Nature structural & molecular biology (2024)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms. Life science alliance 7 (7) (2024)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms. Life science alliance 7 (7) (2024)
Joseph H Lobel, Nicholas T Ingolia
Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling. bioRxiv : the preprint server for biology (2024)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms. Life science alliance 7 (7) (2024)
Joseph H Lobel, Nicholas T Ingolia
Precise measurement of molecular phenotypes with barcode-based CRISPRi systems. bioRxiv : the preprint server for biology (2024)
Jungwoo Wren Kim, Adeline J H Yong, Erin E Aisenberg, Joseph H Lobel, Wei Wang, Ted M Dawson, Valina L Dawson, Ruixuan Gao, Yuh Nung Jan, Helen S Bateup, Nicholas T Ingolia
Molecular recording of calcium signals via calcium-dependent proximity labeling. Nature chemical biology 20 (7) (2024)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms. Life science alliance 7 (7) (2024)
Joseph H Lobel, Nicholas T Ingolia
Precise measurement of molecular phenotypes with barcode-based CRISPRi systems. bioRxiv : the preprint server for biology (2024)
Jungwoo Wren Kim, Adeline J H Yong, Erin E Aisenberg, Joseph H Lobel, Wei Wang, Ted M Dawson, Valina L Dawson, Ruixuan Gao, Yuh Nung Jan, Helen S Bateup, Nicholas T Ingolia
Molecular recording of calcium signals via calcium-dependent proximity labeling. Nature chemical biology (2024)
Jungwoo Wren Kim, Adeline J H Yong, Erin E Aisenberg, Joseph H Lobel, Wei Wang, Ted M Dawson, Valina L Dawson, Ruixuan Gao, Yuh Nung Jan, Helen S Bateup, Nicholas T Ingolia
Molecular recording of calcium signals via calcium-dependent proximity labeling. Nature chemical biology (2024)
Joseph H Lobel, Nicholas T Ingolia
Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling. bioRxiv : the preprint server for biology (2024)
Joseph H Lobel, Nicholas T Ingolia
Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling. bioRxiv : the preprint server for biology (2024)
Mingming Chen, Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito, Pamela Gan, Nicholas T Ingolia, Ken Shirasu, Takuhiro Ito, Yuichi Shichino, Shintaro Iwasaki
A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants. eLife 12 (2023)
Mingming Chen, Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito, Pamela Gan, Nicholas T Ingolia, Ken Shirasu, Takuhiro Ito, Yuichi Shichino, Shintaro Iwasaki
A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants. eLife 12 (2023)
Mingming Chen, Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito, Pamela Gan, Nicholas T Ingolia, Ken Shirasu, Takuhiro Ito, Yuichi Shichino, Shintaro Iwasaki
A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants. eLife 12 (2023)
Lucas Ferguson, Heather E Upton, Sydney C Pimentel, Amanda Mok, Liana F Lareau, Kathleen L Collins, Nicholas T Ingolia
Streamlined and sensitive mono- and di-ribosome profiling in yeast and human cells. Nature methods (2023)
Elijah F Lyons, Lou C Devanneaux, Ryan Y Muller, Anna V Freitas, Zuriah A Meacham, Maria V McSharry, Van N Trinh, Anna J Rogers, Nicholas T Ingolia, Liana F Lareau
Codon optimality modulates protein output by tuning translation initiation. bioRxiv : the preprint server for biology (2023)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα. bioRxiv : the preprint server for biology (2023)
Vanha N Pham, Kevin J Bruemmer, Joel D W Toh, Eva J Ge, Logan Tenney, Carl C Ward, Felix A Dingler, Christopher L Millington, Carlos A García-Prieto, Nicholas T Ingolia, Lucas B Pontel, Manel Esteller, Ketan J Patel, Daniel K Nomura, Christopher J Chang
Formaldehyde regulates S -adenosylmethionine biosynthesis and one-carbon metabolism. Science (New York, N.Y.) 382 (6670) (2023)
Paige D Diamond, Nicholas J McGlincy, Nicholas T Ingolia
Dysregulation of amino acid metabolism upon rapid depletion of cap-binding protein eIF4E. bioRxiv : the preprint server for biology (2023)
Santi Mestre-Fos, Lucas Ferguson, Marena Trinidad, Nicholas T Ingolia, Jamie H D Cate
eIF3 engages with 3'-UTR termini of highly translated mRNAs in neural progenitor cells. bioRxiv : the preprint server for biology (2023)
Mingming Chen, Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito, Pamela Gan, Nicholas T Ingolia, Ken Shirasu, Takuhiro Ito, Yuichi Shichino, Shintaro Iwasaki
A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants. eLife 12 (2023)
Kendra Reynaud, Anna M McGeachy, David Noble, Zuriah A Meacham, Nicholas T Ingolia
Surveying the global landscape of post-transcriptional regulators. Nature structural & molecular biology (2023)
Mingming Chen, Naoyoshi Kumakura, Hironori Saito, Ryan Muller, Madoka Nishimoto, Mari Mito, Pamela Gan, Nicholas T Ingolia, Ken Shirasu, Takuhiro Ito, Yuichi Shichino, Shintaro Iwasaki
A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants. eLife 12 (2023)
Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia
Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα. bioRxiv : the preprint server for biology (2023)
Jonathan M Mudge, Jorge Ruiz-Orera, John R Prensner, Marie A Brunet, Ferriol Calvet, Irwin Jungreis, Jose Manuel Gonzalez, Michele Magrane, Cholsoon Jang, Jana Felicitas Schulz, Yucheng T Yang, M Mar Albà, Julie L Aspden, Pavel V Baranov, Ariel Alejandro Bazzini, Elspeth A Bruford, Maria Jesus Martin, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jin Chen, Juan Pablo Couso, Eric W Deutsch, Paul Flicek, Adam Frankish, Mark Gerstein, Norbert Hübner, Nicholas T Ingolia, Manolis Kellis, Gerben Menschaert, Robert L Moritz, Uwe Ohler, Xavier Roucou, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch
Standardized annotation of translated open reading frames. Nature biotechnology 40 (7) (2022)
Zhipeng Li, Lucas Ferguson, Kirandeep K Deol, Melissa A Roberts, Leslie Magtanong, Joseph M Hendricks, Gergey Alzaem Mousa, Seda Kilinc, Kaitlin Schaefer, James A Wells, Michael C Bassik, Andrei Goga, Scott J Dixon, Nicholas T Ingolia, James A Olzmann
Ribosome stalling during selenoprotein translation exposes a ferroptosis vulnerability. Nature chemical biology 18 (7) (2022)
Kendra Reynaud, Molly Brothers, Michael Ly, Nicholas T Ingolia
Dynamic post-transcriptional regulation by Mrn1 links cell wall homeostasis to mitochondrial structure and function. PLoS genetics 17 (4) (2021)
Nicholas J McGlincy, Zuriah A Meacham, Kendra K Reynaud, Ryan Muller, Rachel Baum, Nicholas T Ingolia
A genome-scale CRISPR interference guide library enables comprehensive phenotypic profiling in yeast. BMC genomics 22 (1) (2021)
Dasmanthie De Silva, Lucas Ferguson, Grant H Chin, Benjamin E Smith, Ryan A Apathy, Theodore L Roth, Franziska Blaeschke, Marek Kudla, Alexander Marson, Nicholas T Ingolia, Jamie H D Cate
Robust T cell activation requires an eIF3-driven burst in T cell receptor translation. eLife 10 (2021)
Ryan Muller, Zuriah A Meacham, Lucas Ferguson, Nicholas T Ingolia
CiBER-seq dissects genetic networks by quantitative CRISPRi profiling of expression phenotypes. Science (New York, N.Y.) 370 (6522) (2021)
Milind D Chalishazar, Sarah J Wait, Fang Huang, Abbie S Ireland, Anandaroop Mukhopadhyay, Younjee Lee, Sophia S Schuman, Matthew R Guthrie, Kristofer C Berrett, Jeffery M Vahrenkamp, Zeping Hu, Marek Kudla, Katarzyna Modzelewska, Guoying Wang, Nicholas T Ingolia, Jason Gertz, David H Lum, Sabina C Cosulich, John S Bomalaski, Ralph J DeBerardinis, Trudy G Oliver
MYC-Driven Small-Cell Lung Cancer is Metabolically Distinct and Vulnerable to Arginine Depletion. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (16) (2019)
Mia C Pulos-Holmes, Daniel N Srole, Maria G Juarez, Amy S-Y Lee, David Trombley McSwiggen, Nicholas T Ingolia, Jamie H D Cate
Repression of ferritin light chain translation by human eIF3. eLife 8 (2019)
Anna M McGeachy, Zuriah A Meacham, Nicholas T Ingolia
An Accessible Continuous-Culture Turbidostat for Pooled Analysis of Complex Libraries. ACS synthetic biology 8 (4) (2019)
Koji Ishikawa, Koji Makanae, Shintaro Iwasaki, Nicholas T Ingolia, Hisao Moriya
Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes. PLoS genetics 13 (1) (2017)
Eric W Mills, Rachel Green, Nicholas T Ingolia
Slowed decay of mRNAs enhances platelet specific translation. Blood 129 (17) (2017)
Kevin C Barry, Nicholas T Ingolia, Russell E Vance
Global analysis of gene expression reveals mRNA superinduction is required for the inducible immune response to a bacterial pathogen. eLife 6 (2017)
Yoshitaka Matsuo, Ken Ikeuchi, Yasushi Saeki, Shintaro Iwasaki, Christian Schmidt, Tsuyoshi Udagawa, Fumiya Sato, Hikaru Tsuchiya, Thomas Becker, Keiji Tanaka, Nicholas T Ingolia, Roland Beckmann, Toshifumi Inada
Ubiquitination of stalled ribosome triggers ribosome-associated quality control. Nature communications 8 (1) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Nicholas T Ingolia