Avi Ma'ayan

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 44

Top Venues

Communications biology

Nature communications

Nucleic acids research

bioRxiv : the preprint server for biology

Icahn School of Medicine at Mount Sinai

Icahn School of Medicine at Mount Sinai (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Icahn School of Medicine at Mount Sinai Jul 01 2015

United States

Professor :: Pharmacological Sciences

Education History

Icahn School of Medicine at Mount Sinai May 01 2002 - May 01 2006

United States

PHD :: Biological Sciences

Fairleigh Dickinson University Sep 01 1997 - Feb 01 2001

United States

MSC :: Computer Science

Fairleigh Dickinson University Sep 01 1993 - May 15 1997

United States

BSC :: Computer Science

Publications

Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma'ayan
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications. Communications biology 7 (1) (2024)
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, Avi Ma'ayan
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO. bioRxiv : the preprint server for biology (2024)
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, Avi Ma'ayan
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO. bioRxiv : the preprint server for biology (2024)
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma'ayan
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications. Communications biology 7 (1) (2024)
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma'ayan
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications. Communications biology 7 (1) (2024)
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, Avi Ma'ayan
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO. bioRxiv : the preprint server for biology (2024)
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma'ayan
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications. Communications biology 7 (1) (2024)
Giacomo B Marino, Daniel J B Clarke, Eden Z Deng, Avi Ma'ayan
RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO. bioRxiv : the preprint server for biology (2024)
Daniel J B Clarke, Giacomo B Marino, Eden Z Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma'ayan
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications. Communications biology 7 (1) (2024)
Giacomo B Marino, Nasheath Ahmed, Zhuorui Xie, Kathleen M Jagodnik, Jason Han, Daniel J B Clarke, Alexander Lachmann, Mark P Keller, Alan D Attie, Avi Ma'ayan
D2H2: diabetes data and hypothesis hub. Bioinformatics advances 3 (1) (2023)
Giacomo B Marino, Nasheath Ahmed, Zhuorui Xie, Kathleen M Jagodnik, Jason Han, Daniel J B Clarke, Alexander Lachmann, Mark P Keller, Alan D Attie, Avi Ma'ayan
D2H2: diabetes data and hypothesis hub. Bioinformatics advances 3 (1) (2023)
Giacomo B Marino, Nasheath Ahmed, Zhuorui Xie, Kathleen M Jagodnik, Jason Han, Daniel J B Clarke, Alexander Lachmann, Mark P Keller, Alan D Attie, Avi Ma'ayan
D2H2: diabetes data and hypothesis hub. Bioinformatics advances 3 (1) (2023)
John Erol Evangelista, Zhuorui Xie, Giacomo B Marino, Nhi Nguyen, Daniel J B Clarke, Avi Ma'ayan
Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic acids research (2023)
Eden Z Deng, Reid H Fleishman, Zhuorui Xie, Giacomo B Marino, Daniel J B Clarke, Avi Ma'ayan
Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells. Aging cell (2023)
John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie, Giacomo B Marino, Vivian Utti, Sherry L Jenkins, Taha Mohseni Ahooyi, Cristian G Bologa, Jeremy J Yang, Jessica L Binder, Praveen Kumar, Christophe Gerard Lambert, Jeffery S Grethe, Eric Wenger, Deanne Taylor, Tudor I Oprea, Bernard de Bono, Avi Ma'ayan
Toxicology knowledge graph for structural birth defects. Communications medicine 3 (1) (2023)
Letizia Amadori, Claudia Calcagno, Dawn M Fernandez, Simon Koplev, Nicolas Fernandez, Ravneet Kaur, Pauline Mury, Nayaab S Khan, Swathy Sajja, Roza Shamailova, Yannick Cyr, Minji Jeon, Christopher A Hill, Peik Sean Chong, Sonum Naidu, Ken Sakurai, Adam Ali Ghotbi, Raphael Soler, Natalia Eberhardt, Adeeb Rahman, Peter Faries, Katherine Moore, Zahi A Fayad, Avi Ma'ayan, Chiara Giannarelli
Erratum: Publisher Correction: Systems immunology-based drug repurposing framework to target inflammation in atherosclerosis. Nature cardiovascular research 2 (8) (2023)
Giacomo B Marino, Michael Ngai, Daniel J B Clarke, Reid H Fleishman, Eden Z Deng, Zhuorui Xie, Nasheath Ahmed, Avi Ma'ayan
GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery. Nucleic acids research (2023)
Eden Z Deng, Reid H Fleishman, Zhuorui Xie, Giacomo B Marino, Daniel J B Clarke, Avi Ma'ayan
Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells. Aging cell (2023)
Eden Z Deng, Reid H Fleishman, Zhuorui Xie, Giacomo B Marino, Daniel J B Clarke, Avi Ma'ayan
Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells. Aging cell (2023)
Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Michal Kouril, Behrouz Shamsaei, Juozas Vasiliauskas, Wen Niu, Naim Mahi, Lixia Zhang, Nicholas A Clark, Yan Ren, Shana White, Rashid Karim, Huan Xu, Jacek Biesiada, Mark F Bennett, Sarah E Davidson, John F Reichard, Kurt Roberts, Vasileios Stathias, Amar Koleti, Dusica Vidovic, Daniel J B Clarke, Stephan C Schürer, Avi Ma'ayan, Jaroslaw Meller, Mario Medvedovic
Connecting omics signatures and revealing biological mechanisms with iLINCS. Nature communications 13 (1) (2022)
Edmund Charles Jenkins, Mrittika Chattopadhyay, Maria Gomez, Denis Torre, Avi Ma'ayan, Miguel Torres-Martin, Daniela Sia, Doris Germain
Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses. Aging cell 21 (10) (2022)
Eryk Kropiwnicki, Alexander Lachmann, Daniel J B Clarke, Zhuorui Xie, Kathleen M Jagodnik, Avi Ma'ayan
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules. BMC bioinformatics 23 (1) (2022)
Amanda L Charbonneau, Arthur Brady, Karl Czajkowski, Jain Aluvathingal, Saranya Canchi, Robert L Carter, Kyle Chard, Daniel J B Clarke, Jonathan Crabtree, Heather H Creasy, Mike D'Arcy, Victor Felix, Michelle G Giglio, Alicia A Gingrich, Rayna Michelle Harris, Theresa K Hodges, Olukemi Ifeonu, Minji Jeon, Eryk Kropiwnicki, Marisa C W Lim, R Lee Liming, Jessica Lumian, Anup A Mahurkar, Meisha Mandal, James B Munro, Suvarna Nadendla, Rudyard Richter, Cia Romano, Philippe Rocca-Serra, Michael Schor, Robert E Schuler, Hongsuda Tangmunarunkit, Alexander M Waldrop, Cris Williams, Karen Word, Susanna-Assunta Sansone, Avi Ma'ayan, Rick Wagner, Ian T Foster, Carl Kesselman, C Titus Brown, Owen White
Making Common Fund data more findable: catalyzing a data ecosystem. GigaScience 11 (2022)
John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M Jagodnik, Sherry L Jenkins, Maxim V Kuleshov, Megan L Wojciechowicz, Stephan C Schürer, Mario Medvedovic, Avi Ma'ayan
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic acids research (2022)
Alexandros Onoufriadis, Laura E Proudfoot, Chrysanthi Ainali, Denis Torre, Maria Papanikolaou, Tuntas Rayinda, Elham Rashidghamat, Retno Danarti, Jemima E Mellerio, Avi Ma'ayan, John A McGrath
Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing. Experimental dermatology (2021)
Evan Austin, Eugene Koo, Alexander Merleev, Denis Torre, Alina Marusina, Guilluame Luxardi, Andrew Mamalis, Roslyn Rivkah Isseroff, Avi Ma'ayan, Emanual Maverakis, Jared Jagdeo
Transcriptome analysis of human dermal fibroblasts following red light phototherapy. Scientific reports 11 (1) (2021)
Sian E Piret, Yiqing Guo, Ahmed A Attallah, Sylvia J Horne, Amy Zollman, Daniel Owusu, Justina Henein, Viktoriya S Sidorenko, Monica P Revelo, Takashi Hato, Avi Ma'ayan, John Cijiang He, Sandeep K Mallipattu
Krüppel-like factor 6-mediated loss of BCAA catabolism contributes to kidney injury in mice and humans. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Minji Jeon, Kathleen M Jagodnik, Eryk Kropiwnicki, Daniel J Stein, Avi Ma'ayan
Prioritizing Pain-Associated Targets with Machine Learning. Biochemistry 60 (18) (2021)
Maxim V Kuleshov, Zhuorui Xie, Alexandra B K London, Janice Yang, John Erol Evangelista, Alexander Lachmann, Ingrid Shu, Denis Torre, Avi Ma'ayan
KEA3: improved kinase enrichment analysis via data integration. Nucleic acids research 49 (W1) (2021)
Dawn M Fernandez, Adeeb H Rahman, Nicolas F Fernandez, Aleksey Chudnovskiy, El-Ad David Amir, Letizia Amadori, Nayaab S Khan, Christine K Wong, Roza Shamailova, Christopher A Hill, Zichen Wang, Romain Remark, Jennifer R Li, Christian Pina, Christopher Faries, Ahmed J Awad, Noah Moss, Johan L M Bjorkegren, Seunghee Kim-Schulze, Sacha Gnjatic, Avi Ma'ayan, J Mocco, Peter Faries, Miriam Merad, Chiara Giannarelli
Single-cell immune landscape of human atherosclerotic plaques. Nature medicine 25 (10) (2019)
Nicholas Heitman, Rachel Sennett, Ka-Wai Mok, Nivedita Saxena, Devika Srivastava, Pieter Martino, Laura Grisanti, Zichen Wang, Avi Ma'ayan, Panteleimon Rompolas, Michael Rendl
Dermal sheath contraction powers stem cell niche relocation during hair cycle regression. Science (New York, N.Y.) 367 (6474) (2019)
Fumio Nakahara, Daniel K Borger, Qiaozhi Wei, Sandra Pinho, Maria Maryanovich, Ali H Zahalka, Masako Suzuki, Cristian D Cruz, Zichen Wang, Chunliang Xu, Philip E Boulais, Avi Ma'ayan, John M Greally, Paul Sylvain Frenette
Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells. Nature cell biology 21 (5) (2019)
Randall J Ellis, Zichen Wang, Nicholas Genes, Avi Ma'ayan
Predicting opioid dependence from electronic health records with machine learning. BioData mining 12 (2019)
Scott A Ochsner, David Abraham, Kirt Martin, Wei Ding, Apollo McOwiti, Wasula Kankanamge, Zichen Wang, Kaitlyn Andreano, Ross A Hamilton, Yue Chen, Angelica Hamilton, Marin L Gantner, Michael Dehart, Shijing Qu, Susan G Hilsenbeck, Lauren B Becnel, Dave Bridges, Avi Ma'ayan, Janice M Huss, Fabio Stossi, Charles E Foulds, Anastasia Kralli, Donald P McDonnell, Neil J McKenna
The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways. Scientific data 6 (1) (2019)
Thomas Strub, Flavia G Ghiraldini, Saul Carcamo, Man Li, Aleksandra Wroblewska, Rajendra Singh, Matthew S Goldberg, Dan Hasson, Zichen Wang, Stuart J Gallagher, Peter Hersey, Avi Ma'ayan, Georgina V Long, Richard A Scolyer, Brian Brown, Bin Zheng, Emily Bernstein
SIRT6 haploinsufficiency induces BRAFV600E melanoma cell resistance to MAPK inhibitors via IGF signalling. Nature communications 9 (1) (2018)
Mark Grimes, Benjamin Hall, Lauren Foltz, Tyler Levy, Klarisa Rikova, Jeremiah Gaiser, William Cook, Ekaterina Smirnova, Travis J Wheeler, Neil R Clark, Alexander Lachmann, Bin Zhang, Peter V Hornbeck, Avi Ma'ayan, Michael Comb
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks. Science signaling 11 (531) (2018)
Avi Ma'ayan
Complex systems biology. Journal of the Royal Society, Interface 14 (134) (2018)
Michael S Breen, Sureyya Ozcan, Jordan M Ramsey, Zichen Wang, Avi Ma'ayan, Nitin Rustogi, Michael G Gottschalk, Maree J Webster, Cynthia Shannon Weickert, Joseph D Buxbaum, Sabine Bahn
Temporal proteomic profiling of postnatal human cortical development. Translational psychiatry 8 (1) (2018)
Simon Koplev, Katie Lin, Anders B Dohlman, Avi Ma'ayan
Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition. PLoS computational biology 14 (1) (2018)
Denis Torre, Patrycja Krawczuk, Kathleen M Jagodnik, Alexander Lachmann, Zichen Wang, Lily Wang, Maxim V Kuleshov, Avi Ma'ayan
Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses. Scientific data 5 (2018)
Tudor I Oprea, Lily Jan, Gary L Johnson, Bryan L Roth, Avi Ma'ayan, Stephan Schürer, Brian K Shoichet, Larry A Sklar, Michael T McManus
Far away from the lamppost. PLoS biology 16 (12) (2018)
Alexander Lachmann, Denis Torre, Alexandra B Keenan, Kathleen M Jagodnik, Hoyjin J Lee, Lily Wang, Moshe C Silverstein, Avi Ma'ayan
Massive mining of publicly available RNA-seq data from human and mouse. Nature communications 9 (1) (2018)
Mario Niepel, Marc Hafner, Qiaonan Duan, Zichen Wang, Evan O Paull, Mirra Chung, Xiaodong Lu, Joshua M Stuart, Todd R Golub, Aravind Subramanian, Avi Ma'ayan, Peter Karl Sorger
Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling. Nature communications 8 (1) (2017)
Noboru Asada, Yuya Kunisaki, Halley Pierce, Zichen Wang, Nicolas F Fernandez, Alexander Birbrair, Avi Ma'ayan, Paul S Frenette
Differential cytokine contributions of perivascular haematopoietic stem cell niches. Nature cell biology 19 (3) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Avi Ma'ayan