Brian A Yee (Brian Yee)

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 26

Top Venues

Nature communications

Science advances

Blood cancer discovery

Genome research

UC San Diego Health System

This page only lists publications with an associated author ORCID identifier.

Affiliation History

UC San Diego Health System Nov 01 2015

United States

Bioinformatics Programmer IV :: Yeo Lab

Publications

Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues. Nature communications 15 (1) (2024)
Pratibha Jagannatha, Alexandra T Tankka, Daniel A Lorenz, Tao Yu, Brian A Yee, Kristopher W Brannan, Catherine Jiarui Zhou, Jason G Underwood, Gene W Yeo
Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution. Genome research (2024)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Ana Vujovic, Laura P M H de Rooij, Ava Keyvani Chahi, He Tian Tony Chen, Brian A Yee, Sampath Kumar Loganathan, Lina Liu, Derek C H Chan, Amanda Tajik, Emily Tsao, Steven Moreira, Pratik Joshi, Joshua Xu, Nicholas Wong, Zaldy Balde, Soheil Jahangiri, Sasan Zandi, Stefan Aigner, John E Dick, Mark D Minden, Daniel Schramek, Gene W Yeo, Kristin J Hope
In vivo screening unveils pervasive RNA-binding protein dependencies in leukemic stem cells and identifies ELAVL1 as a therapeutic target. Blood cancer discovery (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Ana Vujovic, Laura P M H de Rooij, Ava Keyvani Chahi, He Tian Tony Chen, Brian A Yee, Sampath Kumar Loganathan, Lina Liu, Derek C H Chan, Amanda Tajik, Emily Tsao, Steven Moreira, Pratik Joshi, Joshua Xu, Nicholas Wong, Zaldy Balde, Soheil Jahangiri, Sasan Zandi, Stefan Aigner, John E Dick, Mark D Minden, Daniel Schramek, Gene W Yeo, Kristin J Hope
In vivo screening unveils pervasive RNA-binding protein dependencies in leukemic stem cells and identifies ELAVL1 as a therapeutic target. Blood cancer discovery (2023)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Corina E Antal, Tae Gyu Oh, Stefan Aigner, En-Ching Luo, Brian A Yee, Tania Campos, Hervé Tiriac, Katherine L Rothamel, Zhang Cheng, Henry Jiao, Allen Wang, Nasun Hah, Elizabeth Lenkiewicz, Jan C Lumibao, Morgan L Truitt, Gabriela Estepa, Ester Banayo, Senada Bashi, Edgar Esparza, Ruben M Munoz, Jolene K Diedrich, Nicole M Sodir, Jasmine R Mueller, Cory R Fraser, Erkut Borazanci, David J Propper, Daniel D Von Hoff, Christopher Liddle, Ruth T Yu, Annette R Atkins, Haiyong Han, Andrew M Lowy, Michael T Barrett, Dannielle D Engle, Gerard I Evan, Gene W Yeo, Michael Downes, Ronald M Evans
A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Author Correction: Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 14 (1) (2023)
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas Valiya Chembazhi, Katelyn Toohill, You Jin Song, Qinyu Hao, Saman Karimi, Steven M Blue, Brian A Yee, Eric L Van Nostrand, Sushant Bangru, Grace Guzman, Gene W Yeo, Kannanganattu V Prasanth, Sayeepriyadarshini Anakk, Carolyn L Cummins, Auinash Kalsotra
Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature communications 14 (1) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Gaowei Wang, Parth R Patel, Benjamin S Cho, Brian A Yee, Lunfeng Zhang, Hiutung Chu, Sylvia M Evans, Gene W Yeo, Ye Zheng, Wendy Jia Men Huang
RNA binding protein DDX5 restricts RORγt + T reg suppressor function to promote intestine inflammation. Science advances 9 (5) (2023)
Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer, Jonathan C Schmok, Frederick E Tan, Katherine Rothamel, Rachael N McVicar, Elizabeth M Kwong, Krysten L Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Q Vu, Wenhao Jin, Samuel S Park, Phuong Le, Kristopher W Brannan, Eric R Kofman, Yanhua Li, Alexandra T Tankka, Kevin D Dong, Yan Song, Aaron F Carlin, Eric L Van Nostrand, Sandra L Leibel, Gene W Yeo
Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions. bioRxiv : the preprint server for biology (2022)
Aaron A Smargon, Assael A Madrigal, Brian A Yee, Kevin D Dong, Jasmine R Mueller, Gene W Yeo
Crosstalk between CRISPR-Cas9 and the human transcriptome. Nature communications 13 (1) (2022)
Jad N Kanbar, Shengyun Ma, Eleanor S Kim, Nadia S Kurd, Matthew S Tsai, Tiffani Tysl, Christella E Widjaja, Abigail E Limary, Brian A Yee, Zhaoren He, Yajing Hao, Xiang-Dong Fu, Gene W Yeo, Wendy Jia Men Huang, John T Chang
The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression. The Journal of experimental medicine 219 (6) (2022)
Michelle M Kameda-Smith, Helen Zhu, En-Ching Luo, Yujin Suk, Agata Xella, Brian A Yee, Chirayu Chokshi, Sansi Xing, Frederick Tan, Raymond G Fox, Ashley A Adile, David Bakhshinyan, Kevin R Brown, William D Gwynne, Minomi Subapanditha, Petar Miletic, Daniel Picard, Ian Burns, Jason Moffat, Kamil Paruch, Adam J Fleming, Kristin Hope, John P Provias, Marc Remke, Yu Lu, Tannishtha Reya, Chitra Venugopal, Jüri Reimand, Robert J Wechsler-Reya, Gene W Yeo, Sheila K Singh
Characterization of an RNA binding protein interactome reveals a context-specific post-transcriptional landscape of MYC-amplified medulloblastoma. Nature communications 13 (1) (2022)
En-Ching Luo, Jason L Nathanson, Frederick E Tan, Joshua L Schwartz, Jonathan C Schmok, Archana Shankar, Sebastian Markmiller, Brian A Yee, Shashank Sathe, Gabriel A Pratt, Duy B Scaletta, Yuanchi Ha, David E Hill, Stefan Aigner, Gene W Yeo
Large-scale tethered function assays identify factors that regulate mRNA stability and translation. Nature structural & molecular biology 27 (10) (2020)
Jeevisha Bajaj, Michael Hamilton, Yutaka Shima, Kendall Chambers, Kyle Spinler, Eric L Van Nostrand, Brian A Yee, Steven M Blue, Michael Chen, David Rizzeri, Charles Chuah, Vivian G Oehler, H Elizabeth Broome, Roman Sasik, James Scott-Browne, Anjana Rao, Gene W Yeo, Tannishtha Reya
An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia. Nature cancer 1 (4) (2020)

Brian A Yee.css-eqlu8i{font-size:small;padding-left:4px;} (Brian Yee)

Publication Activity (10 Years)

Top Topics

Top Venues

Brian A Yee (Brian Yee)