Judith Barbara Zaugg (Judith B Zaugg, Judith Zaugg)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 34

Top Venues

Nature methods

Blood

Nature communications

Molecular systems biology

EMBL

EMBL-EBI / Cambridge University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

EMBL Sep 01 2014

Germany

Group Leader

Stanford University

United States

Postdoctoral Fellow

EMBL-EBI

United Kingdom

Postdoctoral Fellow

Education History

EMBL-EBI / Cambridge University

United Kingdom

PHD

Publications

Anna Mathioudaki, Xizhe Wang, David Sedloev, Richard Huth, Aryan Kamal, Michael Hundemer, Yi Liu, Spyridoula Vasileiou, Premal D Lulla, Carsten Muller-Tidow, Peter Dreger, Thomas Luft, Tim Sauer, Michael Schmitt, Judith Barbara Zaugg, Caroline Pabst
The remission status of AML patients after allo-HCT is associated with a distinct single-cell bone marrow T-cell signature. Blood 143 (13) (2024)
Matteo Trovato, Daria Bunina, Umut Yildiz, Nadine Fernandez-Novel Marx, Michael Uckelmann, Vita Levina, Yekaterina Perez, Ana Janeva, Benjamin A Garcia, Chen Davidovich, Judith Barbara Zaugg, Kyung Min Noh
Histone H3.3 lysine 9 and 27 control repressive chromatin at cryptic enhancers and bivalent promoters. Nature communications 15 (1) (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Anna Mathioudaki, Xizhe Wang, David Sedloev, Richard Huth, Aryan Kamal, Michael Hundemer, Yi Liu, Spyridoula Vasileiou, Premal D Lulla, Carsten Muller-Tidow, Peter Dreger, Thomas Luft, Tim Sauer, Michael Schmitt, Judith Barbara Zaugg, Caroline Pabst
The remission status of AML patients after allo-HCT is associated with a distinct single-cell bone marrow T-cell signature. Blood 143 (13) (2024)
Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Hendrika Servaas, Laura Villacorta, Ferris E Jung, Christy Luong, Howard Y Chang, Judith Barbara Zaugg, Oliver Stegle, Duncan T Odom, Agnese Loda, Edith Heard
Escape from X inactivation is directly modulated by levels of Xist non-coding RNA. bioRxiv : the preprint server for biology (2024)
Anna Mathioudaki, Xizhe Wang, David Nikolov Sedloev, Richard Huth, Aryan Kamal, Michael Hundemer, Yi Liu, Spyridoula Vasileiou, Premal D Lulla, Carsten Muller-Tidow, Peter Dreger, Thomas Luft, Tim Sauer, Michael Schmitt, Judith Barbara Zaugg, Caroline Pabst
The remission status of AML patients post alloSCT is associated with a distinct single-cell bone marrow T cell signature. Blood (2024)
Anna Mathioudaki, Xizhe Wang, David Nikolov Sedloev, Richard Huth, Aryan Kamal, Michael Hundemer, Yi Liu, Spyridoula Vasileiou, Premal D Lulla, Carsten Muller-Tidow, Peter Dreger, Thomas Luft, Tim Sauer, Michael Schmitt, Judith Barbara Zaugg, Caroline Pabst
The remission status of AML patients post alloSCT is associated with a distinct single-cell bone marrow T cell signature. Blood (2024)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Aryan Kamal, Christian Arnold, Annique Claringbould, Rim Moussa, Nila Hendrika Servaas, Maksim Kholmatov, Neha Daga, Daria S Nogina, Sophia Mueller-Dott, Armando Reyes-Palomares, Giovanni Palla, Olga M Sigalova, Daria Bunina, Caroline Pabst, Judith Barbara Zaugg
GRaNIE and GRaNPA: inference and evaluation of enhancer-mediated gene regulatory networks. Molecular systems biology (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Bettina Weigel, Jana F Tegethoff, Sarah D Grieder, Bryce Lim, Bhuvaneswari Nagarajan, Yu-Chao Liu, Jule Truberg, Dimitris Papageorgiou, Juan M Adrian-Segarra, Laura K Schmidt, Janina Kaspar, Eric Poisel, Elisa Heinzelmann, Manu Saraswat, Marleen Christ, Christian Arnold, Ignacio L Ibarra, Joaquin Campos, Jeroen Krijgsveld, Hannah Monyer, Judith Barbara Zaugg, Claudio Acuna, Moritz Mall
MYT1L haploinsufficiency in human neurons and mice causes autism-associated phenotypes that can be reversed by genetic and pharmacologic intervention. Molecular psychiatry (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Irene de Teresa-Trueba, Sara K Goetz, Alexander Mattausch, Frosina Stojanovska, Christian E Zimmerli, Mauricio Toro-Nahuelpan, Dorothy W C Cheng, Fergus Tollervey, Constantin Pape, Martin Beck, Alba Diz-Muñoz, Anna Kreshuk, Julia Mahamid, Judith Barbara Zaugg
Convolutional networks for supervised mining of molecular patterns within cellular context. Nature methods 20 (2) (2023)
Ignacio L Ibarra, Vikram S Ratnu, Lucia Gordillo, In-Young Hwang, Luca Mariani, Kathryn Weinand, Henrik M Hammarén, Jennifer Heck, Martha L Bulyk, Mikhail M Savitski, Judith Barbara Zaugg, Kyung Min Noh
Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements. Molecular systems biology 18 (8) (2022)
Peter-Martin Bruch, Holly Ar Giles, Carolin Kolb, Sophie A Herbst, Tina Becirovic, Tobias Roider, Junyan Lu, Sebastian Scheinost, Lena Wagner, Jennifer Huellein, Ivan Berest, Mark Kriegsmann, Katharina Kriegsmann, Christiane Zgorzelski, Peter Dreger, Judith Barbara Zaugg, Carsten Müller-Tidow, Thorsten Zenz, Wolfgang Huber, Sascha Dietrich
Drug-microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL. Molecular systems biology 18 (8) (2022)
Lixiazi He, Christian Arnold, Judith Thoma, Christian Rohde, Maksim Kholmatov, Swati Garg, Cheng-Chih Hsiao, Linda Viol, Kaiqing Zhang, Rui Sun, Christina Schmidt, Maike Janssen, Tara MacRae, Karin Huber, Christian Thiede, Josée Hébert, Guy Sauvageau, Julia Spratte, Herbert Fluhr, Gabriela Aust, Carsten Müller-Tidow, Christof Niehrs, Gislene Pereira, Jörg Hamann, Motomu Tanaka, Judith Barbara Zaugg, Caroline Pabst
CDK7/12/13 inhibition targets an oscillating leukemia stem cell network and synergizes with venetoclax in acute myeloid leukemia. EMBO molecular medicine 14 (4) (2022)
Eleni Kafkia, Amparo Andres-Pons, Kerstin Ganter, Markus Seiler, Tom S Smith, Anna Andrejeva, Paula Jouhten, Filipa Pereira, Catarina Franco, Anna Kuroshchenkova, Sergio Leone, Ritwick Sawarkar, Rebecca H Boston, James E D Thaventhiran, Judith Barbara Zaugg, Kathryn S Lilley, Christophe Lancrin, Martin Beck, Kiran Raosaheb Patil
Operation of a TCA cycle subnetwork in the mammalian nucleus. Science advances 8 (35) (2022)
Judith Barbara Zaugg, Pelin Sahlén, Robin Andersson, Meritxell Alberich-Jorda, Wouter de Laat, Bart Deplancke, Jorge Ferrer, Susanne Mandrup, Gioacchino Natoli, Dariusz Plewczyński, Álvaro Rada-Iglesias, Salvatore Spicuglia
Current challenges in understanding the role of enhancers in disease. Nature structural & molecular biology (2022)
Marina Scheller, Anne Kathrin Ludwig, Stefanie Göllner, Christian Rohde, Stephen Krämer, Sina Stäble, Maike Janssen, James-Arne Müller, Lixiazi He, Nicole Bäumer, Christian Arnold, Joachim Gerß, Maximilian Schönung, Christian Thiede, Christian Niederwieser, Dietger Niederwieser, Hubert Serve, Wolfgang E Berdel, Ulrich Thiem, Inga Hemmerling, Florian Leuschner, Christoph Plass, Matthias Schlesner, Judith Barbara Zaugg, Michael D Milsom, Flavia Carla Meotti, Caroline Pabst, Daniel B Lipka, Carsten Muller-Tidow
Hotspot DNMT3A mutations in clonal hematopoiesis and acute myeloid leukemia sensitize cells to azacytidine via viral mimicry response. Nature cancer 2 (5) (2021)
Paula Weidemüller, Maksim M Kholmatov, Evangelia Petsalaki, Judith Barbara Zaugg
Transcription factors: Bridge between cell signaling and gene regulation. Proteomics (2021)
Olga M Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen E M Furlong, Judith Barbara Zaugg
Predictive features of gene expression variation reveal mechanistic link with differential expression. Molecular systems biology 16 (8) (2021)
Rajan Guha, Anna Mathioudaki, Safiatou Doumbo, Didier Doumtabe, Jeff Skinner, Gunjan Arora, Shafiuddin Siddiqui, Shanping Li, Kassoum Kayentao, Aissata Ongoiba, Judith Barbara Zaugg, Boubacar Traore, Peter Dobbs Crompton
Plasmodium falciparum malaria drives epigenetic reprogramming of human monocytes toward a regulatory phenotype. PLoS pathogens 17 (4) (2021)
Ignacio L Ibarra, Nele M Hollmann, Bernd Klaus, Sandra Augsten, Britta Velten, Janosch Hennig, Judith Barbara Zaugg
Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions. Nature communications 11 (1) (2020)
Rajan Guha, Anna Mathioudaki, Safiatou Doumbo, Didier Doumtabe, Jeff Skinner, Gunjan Arora, Shafiuddin Siddiqui, Shanping Li, Kassoum Kayentao, Aissata Ongoiba, Judith Barbara Zaugg, Boubacar Traore, Peter D Crompton
Plasmodium falciparum malaria drives epigenetic reprogramming of human monocytes toward a regulatory phenotype. bioRxiv : the preprint server for biology (2020)
Maja Gehre, Daria Bunina, Simone Sidoli, Marlena J Lübke, Nichole Diaz, Matteo Trovato, Benjamin A Garcia, Judith Barbara Zaugg, Kyung Min Noh
Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy. Nature genetics 52 (3) (2020)
Fabian Grubert, Rohith Srivas, Damek V Spacek, Maya Kasowski, Mariana Ruiz-Velasco, Nasa Sinnott-Armstrong, Peyton Greenside, Anil Narasimha, Qing Liu, Benjamin Geller, Akshay Sanghi, Michael Kulik, Silin Sa, Marlene Rabinovitch, Anshul Kundaje, Stephen Dalton, Judith Barbara Zaugg, Michael Paul Snyder
Landscape of cohesin-mediated chromatin loops in the human genome. Nature 583 (7818) (2020)
Armando Reyes-Palomares, Mingxia Gu, Fabian Grubert, Ivan Berest, Silin Sa, Maya Kasowski, Christian Arnold, Mao Shuai, Rohith Srivas, Simon Miao, Dan Li, Michael Paul Snyder, Marlene Rabinovitch, Judith Barbara Zaugg
Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension. Nature communications 11 (1) (2020)
Kasper D Rasmussen, Ivan Berest, Sandra Keβler, Koutarou Nishimura, Lucía Simón-Carrasco, George S Vassiliou, Marianne T Pedersen, Jesper Christensen, Judith Barbara Zaugg, Kristian Helin
TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells. Genome research 29 (4) (2019)
Swati Garg, Armando Reyes-Palomares, Lixiazi He, Anne Bergeron, Vincent-Philippe Lavallée, Sébastien Lemieux, Patrick Gendron, Christian Rohde, Jianglong Xia, Prarabdha Jagdhane, Carsten Muller-Tidow, Daniel B Lipka, Suzan Imren, R Keith Humphries, Claudia Waskow, Binje Vick, Irmela Jeremias, Guillaume Richard Carpentier, Josée Hébert, Guy Sauvageau, Judith Barbara Zaugg, Frédéric Barabé, Caroline Pabst
Hepatic leukemia factor is a novel leukemic stem cell regulator in DNMT3A, NPM1, and FLT3-ITD triple-mutated AML. Blood 134 (3) (2019)
Marco L Hennrich, Natalie Romanov, Patrick Horn, Samira Jaeger, Volker Eckstein, Violetta Steeples, Fei Ye, Ximing Ding, Laura Poisa-Beiro, Mang Ching Lai, Benjamin Lang, Jacqueline Boultwood, Thomas Luft, Judith Barbara Zaugg, Andrea Pellagatti, Peer Bork, Patrick Aloy, Anne-Claude Gavin, Anthony Dick Ho
Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline. Nature communications 9 (1) (2018)

Judith Barbara Zaugg.css-eqlu8i{font-size:small;padding-left:4px;} (Judith B Zaugg, Judith Zaugg)

Publication Activity (10 Years)

Top Topics

Top Venues

Judith Barbara Zaugg (Judith B Zaugg, Judith Zaugg)