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Ami Siddharth Bhatt (Ami Bhatt, Ami S Bhatt)

ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 46

Top Venues

Nature communications

Nature biotechnology

bioRxiv : the preprint server for biology

Science translational medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Dylan G Maghini, Mai Dvorak, Alex Dahlen, Morgan M Roos, Scott Kuersten, Ami Siddharth Bhatt
Quantifying bias introduced by sample collection in relative and absolute microbiome measurements. Nature biotechnology (2023)
Naomi L Haddock, Layla J Barkal, Nikhil Ram-Mohan, Gernot Kaber, Charles Y Chiu, Ami Siddharth Bhatt, Samuel Yang, Paul L Bollyky
Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases. Nature microbiology (2023)
Rachael B Chanin, Patrick T West, Ryan M Park, Jakob Wirbel, Gabriella Z M Green, Arjun M Miklos, Matthew O Gill, Angela S Hickey, Erin F Brooks, Ami Siddharth Bhatt
Intragenic DNA inversions expand bacterial coding capacity. bioRxiv : the preprint server for biology (2023)
Dylan G Maghini, Mai Dvorak, Alex Dahlen, Morgan M Roos, Scott Kuersten, Ami Siddharth Bhatt
Quantifying bias introduced by sample collection in relative and absolute microbiome measurements. Nature biotechnology (2023)
Aravind Natarajan, Brayon J Fremin, Danica T Schmidtke, Marlene K Wolfe, Soumaya Zlitni, Katherine E Graham, Erin F Brooks, Christopher J Severyn, Kathleen M Sakamoto, Norman J Lacayo, Scott Kuersten, Jeff Koble, Glorianna Caves, Inna Kaplan, Upinder Singh, Prasanna Jagannathan, Andrew R Rezvani, Ami Siddharth Bhatt, Alexandria B Boehm
The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker. Applied and environmental microbiology (2023)
Aravind Natarajan, Brayon J Fremin, Danica T Schmidtke, Marlene K Wolfe, Soumaya Zlitni, Katherine E Graham, Erin F Brooks, Christopher J Severyn, Kathleen M Sakamoto, Norman J Lacayo, Scott Kuersten, Jeff Koble, Glorianna Caves, Inna Kaplan, Upinder Singh, Prasanna Jagannathan, Andrew R Rezvani, Ami Siddharth Bhatt, Alexandria B Boehm
Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker. bioRxiv : the preprint server for biology (2023)
Laura J Keller, Taylor H Nguyen, Lawrence J Liu, Brianna M Hurysz, Markus Lakemeyer, Matteo Guerra, Danielle J Gelsinger, Rachael B Chanin, Nhi Ngo, Kenneth M Lum, Franco Faucher, Phillip Ipock, Micah J Niphakis, Ami Siddharth Bhatt, Anthony J O'Donoghue, Kerwyn Casey Huang, Matthew M Bogyo
Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron. Nature chemical biology (2023)
Marcelo Der Torossian Torres, Erin Brooks, Angela Cesaro, Hila Sberro, Cosmos Nicolaou, Ami Siddharth Bhatt, de la Fuente-Nunez Cesar
Human gut metagenomic mining reveals an untapped source of peptide antibiotics. bioRxiv : the preprint server for biology (2023)
Yishay Pinto, Meenakshi Chakraborty, Navami Jain, Ami Siddharth Bhatt
Phage-inclusive profiling of human gut microbiomes with Phanta. Nature biotechnology (2023)
Julia D Ransohoff, Victor Ritter, Natasha Purington, Karen Andrade, Summer Han, Mina Liu, Su-Ying Liang, Esther M John, Scarlett L Gomez, Melinda L Telli, Lidia Schapira, Haruka Itakura, George W Sledge, Ami Siddharth Bhatt, Allison W Kurian
Antimicrobial exposure is associated with decreased survival in triple-negative breast cancer. Nature communications 14 (1) (2023)
Aravind Natarajan, Brayon J Fremin, Danica T Schmidtke, Marlene K Wolfe, Soumaya Zlitni, Katherine E Graham, Erin F Brooks, Christopher J Severyn, Kathleen M Sakamoto, Norman J Lacayo, Scott Kuersten, Jeff Koble, Glorianna Caves, Inna Kaplan, Upinder Singh, Prasanna Jagannathan, Andrew R Rezvani, Ami Siddharth Bhatt, Alexandria B Boehm
Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker. bioRxiv : the preprint server for biology (2023)
Abigail L Lind, Nathan A McDonald, Elias R Gerrick, Ami Siddharth Bhatt, Katherine S Pollard
Hybrid assemblies of microbiome Blastocystis protists reveal evolutionary diversification reflecting host ecology. bioRxiv : the preprint server for biology (2023)
Javier Bolaños-Meade, Mehdi Hamadani, Juan Wu, Monzr M Al Malki, Michael J Martens, Lyndsey Runaas, Hany Elmariah, Andrew R Rezvani, Mahasweta Gooptu, Karilyn T Larkin, Brian C Shaffer, Najla El Jurdi, Alison W Loren, Melhem Solh, Aric C Hall, Amin M Alousi, Omer H Jamy, Miguel-Angel Perales, Janny M Yao, Kristy Applegate, Ami Siddharth Bhatt, Leslie S Kean, Yvonne A Efebera, Ran Reshef, William Clark, Nancy L DiFronzo, Eric S Leifer, Mary M Horowitz, Richard J Jones, Shernan G Holtan, null null
Post-Transplantation Cyclophosphamide-Based Graft-versus-Host Disease Prophylaxis. The New England journal of medicine 388 (25) (2023)
Aravind Natarajan, Brayon J Fremin, Danica T Schmidtke, Marlene K Wolfe, Soumaya Zlitni, Katherine E Graham, Erin F Brooks, Christopher J Severyn, Kathleen M Sakamoto, Norman J Lacayo, Scott Kuersten, Jeff Koble, Glorianna Caves, Inna Kaplan, Upinder Singh, Prasanna Jagannathan, Andrew R Rezvani, Ami Siddharth Bhatt, Alexandria B Boehm
Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker. bioRxiv : the preprint server for biology (2023)
Benjamin A Siranosian, Erin F Brooks, Tessa M Andermann, Andrew R Rezvani, Niaz Banaei, Hua Tang, Ami Siddharth Bhatt
Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults. Nature communications 13 (1) (2022)
Tamina Rückert, Geoffroy Andrieux, Melanie Boerries, Kathrin Hanke-Müller, Nadine M Woessner, Stephanie Doetsch, Christoph Schell, Konrad Aumann, Julia Kolter, Annette Schmitt-Graeff, Marcel Schiff, Lukas M Braun, Eileen Haring, Sandra Kissel, Benjamin A Siranosian, Ami Siddharth Bhatt, Peter Nordkild, Jan Wehkamp, Benjamin Anderschou Holbech Jensen, Susana Minguet, Justus Duyster, Robert Zeiser, Natalie Stickel
Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling. Science translational medicine 14 (676) (2022)
Fiona B Tamburini, Dylan Maghini, Ovokeraye H Oduaran, Ryan Brewster, Michaella R Hulley, Venesa Sahibdeen, Shane A Norris, Stephen M Tollman, Kathleen Kahn, Ryan G Wagner, Alisha N Wade, Floidy Wafawanaka, Francesc Xavier Gómez-Olivé, Rhian Twine, Zané Lombard, null null, Scott Hazelhurst, Ami Siddharth Bhatt
Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa. Nature communications 13 (1) (2022)
Tamina Rückert, Geoffroy Andrieux, Melanie Boerries, Kathrin Hanke-Müller, Nadine M Woessner, Stephanie Doetsch, Christoph Schell, Konrad Aumann, Julia Kolter, Annette Schmitt-Graeff, Marcel Schiff, Lukas M Braun, Eileen Haring, Sandra Kissel, Benjamin A Siranosian, Ami Siddharth Bhatt, Peter Nordkild, Jan Wehkamp, Benjamin Anderschou Holbech Jensen, Susana Minguet, Justus Duyster, Robert Zeiser, Natalie Stickel
Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling. Science translational medicine 14 (676) (2022)
Matthew G Durrant, Alison Fanton, Josh Tycko, Michaela Hinks, Sita S Chandrasekaran, Nicholas T Perry, Julia Schaepe, Peter P Du, Peter Lotfy, Michael C Bassik, Lacramioara Bintu, Ami Siddharth Bhatt, Patrick D Hsu
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome. Nature biotechnology (2022)
Tamina Rückert, Geoffroy Andrieux, Melanie Boerries, Kathrin Hanke-Müller, Nadine M Woessner, Stephanie Doetsch, Christoph Schell, Konrad Aumann, Julia Kolter, Annette Schmitt-Graeff, Marcel Schiff, Lukas M Braun, Eileen Haring, Sandra Kissel, Benjamin A Siranosian, Ami Siddharth Bhatt, Peter Nordkild, Jan Wehkamp, Benjamin Anderschou Holbech Jensen, Susana Minguet, Justus Duyster, Robert Zeiser, Natalie Stickel
Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling. Science translational medicine 14 (676) (2022)
Julie R Gralow, Fredrick Chite Asirwa, Ami Siddharth Bhatt, Maria T Bourlon, Quyen D Chu, Alexandru E Eniu, Patrick J Loehrer, Gilberto Lopes, Lawrence N Shulman, Julia Close, Jamie Von Roenn, Michal Tibbits, Doug Pyle
Recommendations from the ASCO Academic Global Oncology Task Force. JCO global oncology 6 (2021)
Brayon J Fremin, Cosmos Nicolaou, Ami Siddharth Bhatt
Simultaneous ribosome profiling of hundreds of microbes from the human microbiome. Nature protocols 16 (10) (2021)
Stephen Nayfach, A David Páez-Espino, Lee Call, Soo Jen Low, Hila Sberro, Natalia N Ivanova, Amy D Proal, Michael A Fischbach, Ami Siddharth Bhatt, Philip Hugenholtz, Nikos C Kyrpides
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nature microbiology 6 (7) (2021)
Erin F Brooks, Ami Siddharth Bhatt
The gut microbiome: a missing link in understanding the gastrointestinal manifestations of COVID-19? Cold Spring Harbor molecular case studies 7 (2) (2021)
Kristina Maas-Bauer, Juliane K Lohmeyer, Toshihito Hirai, Teresa Lopes Ramos, Furqan M Fazal, Ulrike M Litzenburger, Kathryn E Yost, Jessica V Ribado, Neeraja Kambham, Arielle S Wenokur, Po-Yu Lin, Maite Alvarez, Melissa Mavers, Jeanette Baker, Ami Siddharth Bhatt, Howard Y Chang, Federico Simonetta, Robert S Negrin
Invariant natural killer T-cell subsets have diverse graft-versus-host-disease-preventing and antitumor effects. Blood 138 (10) (2021)
Aravind Natarajan, Alvin Han, Soumaya Zlitni, Erin F Brooks, Summer E Vance, Marlene Wolfe, Upinder Singh, Prasanna Jagannathan, Benjamin A Pinsky, Alexandria B Boehm, Ami Siddharth Bhatt
Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature communications 12 (1) (2021)
Prasanna Jagannathan, Jason R Andrews, Hector Bonilla, Haley Hedlin, Karen B Jacobson, Vidhya Balasubramanian, Natasha Purington, Savita Kamble, Christiaan R de Vries, Orlando Quintero, Kent Y Feng, Catherine Ley, Dean Winslow, Jennifer Newberry, Karlie Edwards, Colin Hislop, Ingrid Choong, Yvonne Maldonado, Jeffrey Glenn, Ami Siddharth Bhatt, Catherine A Blish, Taia T Wang, Chaitan Khosla, Benjamin A Pinsky, Manisha Desai, Julie Parsonnet, Upinder Singh
Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial. Nature communications 12 (1) (2021)
Aravind Natarajan, Alvin Han, Soumaya Zlitni, Erin F Brooks, Summer E Vance, Marlene Wolfe, Upinder Singh, Prasanna Jagannathan, Benjamin A Pinsky, Alexandria B Boehm, Ami Siddharth Bhatt
Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature communications 12 (1) (2021)
Brayon J Fremin, Ami Siddharth Bhatt
Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes. Genome biology 22 (1) (2021)
Aravind Natarajan, Ami Siddharth Bhatt
Microbes and microbiomes in 2020 and beyond. Nature communications 11 (1) (2020)
Dylan G Maghini, Eli L Moss, Summer E Vance, Ami Siddharth Bhatt
Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome. Nature protocols 16 (1) (2020)
Eli L Moss, Dylan G Maghini, Ami Siddharth Bhatt
Complete, closed bacterial genomes from microbiomes using nanopore sequencing. Nature biotechnology 38 (6) (2020)
Soumaya Zlitni, Alex Bishara, Eli L Moss, Ekaterina Tkachenko, Joyce B Kang, Rebecca N Culver, Tessa M Andermann, Ziming Weng, Christina Wood, Christine Handy, Hanlee P Ji, Serafim Batzoglou, Ami Siddharth Bhatt
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale. Genome medicine 12 (1) (2020)
Benjamin A Siranosian, Fiona B Tamburini, Gavin Sherlock, Ami Siddharth Bhatt
Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages. Nature communications 11 (1) (2020)
Brayon J Fremin, Ami Siddharth Bhatt
Structured RNA Contaminants in Bacterial Ribo-Seq. mSphere 5 (5) (2020)
Benjamin A Siranosian, Fiona B Tamburini, Gavin Sherlock, Ami Siddharth Bhatt
Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages. Nature communications 11 (1) (2020)
Brayon J Fremin, Hila Sberro, Ami Siddharth Bhatt
MetaRibo-Seq measures translation in microbiomes. Nature communications 11 (1) (2020)
Jason K Wang, Shivaal K Roy, Michele Barry, Robert T Chang, Ami Siddharth Bhatt
Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine. BMC medical education 18 (1) (2018)
Ami Siddharth Bhatt
Digesting New Developments in Biosensors. The New England journal of medicine 379 (7) (2018)
Alex Bishara, Eli L Moss, Mikhail Kolmogorov, Alma E Parada, Ziming Weng, Arend Sidow, Anne E Dekas, Serafim Batzoglou, Ami Siddharth Bhatt
High-quality genome sequences of uncultured microbes by assembly of read clouds. Nature biotechnology (2018)
Ami Siddharth Bhatt
Microbes prevent HSPCs from "NOD"-ing off. Blood 129 (2) (2018)
Jessica V Ribado, Catherine Ley, Thomas D Haggerty, Ekaterina Tkachenko, Ami Siddharth Bhatt, Julie Parsonnet
Household triclosan and triclocarban effects on the infant and maternal microbiome. EMBO molecular medicine 9 (12) (2018)
Arturo Lopez Pineda, Mario F Rodríguez-Moran, Cleto Álvarez-Aguilar, Sarah M Fuentes Valle, Román Acosta-Rosales, Ami Siddharth Bhatt, Shruti N Sheth, Carlos Daniel Bustamante
Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes. BMC cancer 18 (1) (2018)
Fiona B Tamburini, Tessa M Andermann, Ekaterina Tkachenko, Fiona Senchyna, Niaz Banaei, Ami Siddharth Bhatt
Precision identification of diverse bloodstream pathogens in the gut microbiome. Nature medicine 24 (12) (2018)
Ami Siddharth Bhatt
Technological solutions for global hematology and oncology. Blood advances 1 (6) (2017)
Veronica E Manzo, Ami Siddharth Bhatt
The human microbiome in hematopoiesis and hematologic disorders. Blood 126 (3) (2015)

Ami Siddharth Bhatt.css-eqlu8i{font-size:small;padding-left:4px;} (Ami Bhatt, Ami S Bhatt)

Publication Activity (10 Years)

Top Topics

Top Venues

Ami Siddharth Bhatt (Ami Bhatt, Ami S Bhatt)