Giorgio Colombo

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 60

Top Venues

Journal of chemical information and modeling

Journal of chemical theory and computation

Journal of the American Chemical Society

Chemistry (Weinheim an der Bergstrasse, Germany)

National Research Council

Unversity of Milano/Penn State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Research Council

Italy

Researcher - PI of Computational Biochemistry Group :: Istituto di Chimica del Riconoscimento Molecolare

National Research Council

Italy

Researcher - PI of Computational Biochemistry Group :: Istituto di Chimica del Riconoscimento Molecolare

National Research Council

Italy

Researcher - PI of Computational Biochemistry Group :: Istituto di Chimica del Riconoscimento Molecolare

Univerisity of Groningen

Netherlands

Marie Curie Post Doctoral Fellow :: Biophysical Chemistry

Education History

Unversity of Milano/Penn State University

Italy

PHD :: Chemistry

University of Milano

Italy

MSC :: Chemistry

Publications

Mauro Bombaci, Enrico Mario Alessandro Fassi, Andrea Gobbini, Davide Mileto, Irene Cassaniti, Elisa Pesce, Emanuele Casali, Alessandro Mancon, Jose Camilla Sammartino, Alessandro Ferrari, Elena Percivalle, Romualdo Grande, Edoardo Marchisio, Maria Rita Gismondo, Sergio Abrignani, Fausto Baldanti, Giorgio Colombo, Renata Grifantini
High-throughput peptide array analysis and computational techniques for serological profiling of flavivirus infections: Implications for diagnostics and vaccine development. Journal of medical virology 96 (9) (2024)
Gabriela Chiosis, Seth McNutt, Tanaya Roychowdhury, Chiranjeevi Pasala, Hieu Nguyen, Daniel Thorton, Sahil Sharma, Luke Boticelli, Chander S Digwal, Suhasini Joshi, Nan Yang, Palak Panchal, Souparna Chakrabarty, Sadık Bay, Vladimir Markov, Charlene Kwong, Jeanine Lisanti, Sun Young Chung, Stephen D Ginsberg, Pengrong Yan, Elisa de Stanchina, Adriana Corben, Shanu Modi, Mary L Alpaugh, Giorgio Colombo, Hediye Erdjument-Bromage, Thomas Neubert, Robert J Chalkley, Peter Baker, Alma L Burlingame, Anna Rodina, Feixia Chu
Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation. Research square (2024)
Federica Guarra, Giorgio Colombo
Conformational Dynamics, Energetics, and the Divergent Evolution of Allosteric Regulation: The Case of the Yeast MAPK Family. Chembiochem : a European journal of chemical biology (2024)
Gabriela Chiosis, Seth McNutt, Tanaya Roychowdhury, Chiranjeevi Pasala, Hieu Nguyen, Daniel Thorton, Sahil Sharma, Luke Boticelli, Chander S Digwal, Suhasini Joshi, Nan Yang, Palak Panchal, Souparna Chakrabarty, Sadık Bay, Vladimir Markov, Charlene Kwong, Jeanine Lisanti, Sun Young Chung, Stephen D Ginsberg, Pengrong Yan, Elisa de Stanchina, Adriana Corben, Shanu Modi, Mary L Alpaugh, Giorgio Colombo, Hediye Erdjument-Bromage, Thomas Neubert, Robert J Chalkley, Peter Baker, Alma L Burlingame, Anna Rodina, Feixia Chu
Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation. Research square (2024)
Seth W McNutt, Tanaya Roychowdhury, Chiranjeevi Pasala, Hieu T Nguyen, Daniel T Thornton, Sahil Sharma, Luke Botticelli, Chander S Digwal, Suhasini Joshi, Nan Yang, Palak Panchal, Souparna Chakrabarty, Sadık Bay, Vladimir Markov, Charlene Kwong, Jeanine Lisanti, Sun Young Chung, Stephen D Ginsberg, Pengrong Yan, Elisa DeStanchina, Adriana Corben, Shanu Modi, Mary L Alpaugh, Giorgio Colombo, Hediye Erdjument-Bromage, Thomas A Neubert, Robert J Chalkley, Peter R Baker, Alma L Burlingame, Anna Rodina, Gabriela Chiosis, Feixia Chu
Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation. Research square (2024)
Gabriela Chiosis, Seth McNutt, Tanaya Roychowdhury, Chiranjeevi Pasala, Hieu Nguyen, Daniel Thorton, Sahil Sharma, Luke Boticelli, Chander S Digwal, Suhasini Joshi, Nan Yang, Palak Panchal, Souparna Chakrabarty, Sadık Bay, Vladimir Markov, Charlene Kwong, Jeanine Lisanti, Sun Young Chung, Stephen D Ginsberg, Pengrong Yan, Elisa de Stanchina, Adriana Corben, Shanu Modi, Mary L Alpaugh, Giorgio Colombo, Hediye Erdjument-Bromage, Thomas Neubert, Robert J Chalkley, Peter Baker, Alma L Burlingame, Anna Rodina, Feixia Chu
Phosphorylation-Driven Epichaperome Assembly: A Critical Regulator of Cellular Adaptability and Proliferation. Research square (2024)
Federica Guarra, Giorgio Colombo
Conformational Dynamics, Energetics, and the Divergent Evolution of Allosteric Regulation: The Case of the Yeast MAPK Family. Chembiochem : a European journal of chemical biology 25 (15) (2024)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society 146 (1) (2023)
Matteo Castelli, Andrea Magni, Giorgio Bonollo, Silvia Pavoni, Francesco Frigerio, A Sofia F Oliveira, Fabrizio Cinquini, Stefano Artin Serapian, Giorgio Colombo
Molecular mechanisms of chaperone-directed protein folding: Insights from atomistic simulations. Protein science : a publication of the Protein Society 33 (3) (2023)
Federica Guarra, Giorgio Colombo
Computational Methods in Immunology and Vaccinology: Design and Development of Antibodies and Immunogens. Journal of chemical theory and computation (2023)
Matteo Castelli, Andrea Magni, Giorgio Bonollo, Silvia Pavoni, Francesco Frigerio, A Sofia F Oliveira, Fabrizio Cinquini, Stefano Artin Serapian, Giorgio Colombo
Molecular Mechanisms of Chaperone Directed Protein Folding: Insights from Atomistic Simulations. Protein science : a publication of the Protein Society (2023)
Matteo Castelli, Andrea Magni, Giorgio Bonollo, Silvia Pavoni, Francesco Frigerio, A Sofia F Oliveira, Fabrizio Cinquini, Stefano Artin Serapian, Giorgio Colombo
Molecular mechanisms of chaperone-directed protein folding: Insights from atomistic simulations. Protein science : a publication of the Protein Society 33 (3) (2023)
Om Shanker Tiwari, Ruth Aizen, Massimiliano Meli, Giorgio Colombo, Linda J W Shimon, Noam Tal, Ehud Gazit
Entropically-Driven Co-assembly of l-Histidine and l-Phenylalanine to Form Supramolecular Materials. ACS nano 17 (4) (2023)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society 146 (1) (2023)
Om Shanker Tiwari, Ruth Aizen, Massimiliano Meli, Giorgio Colombo, Linda J W Shimon, Noam Tal, Ehud Gazit
Entropically-Driven Co-assembly of l-Histidine and l-Phenylalanine to Form Supramolecular Materials. ACS nano (2023)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society 146 (1) (2023)
Matteo Castelli, Andrea Magni, Giorgio Bonollo, Silvia Pavoni, Francesco Frigerio, A Sofia F Oliveira, Fabrizio Cinquini, Stefano Artin Serapian, Giorgio Colombo
Molecular mechanisms of chaperone-directed protein folding: Insights from atomistic simulations. Protein science : a publication of the Protein Society 33 (3) (2023)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society (2023)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society 146 (1) (2023)
Alice Triveri, Emanuele Casali, Elena Frasnetti, Filippo Doria, Francesco Frigerio, Fabrizio Cinquini, Silvia Pavoni, Elisabetta Moroni, Filippo Marchetti, Stefano Artin Serapian, Giorgio Colombo
Conformational Behavior of SARS-Cov-2 Spike Protein Variants: Evolutionary Jumps in Sequence Reverberate in Structural Dynamic Differences. Journal of chemical theory and computation (2023)
Alice Triveri, Emanuele Casali, Elena Frasnetti, Filippo Doria, Francesco Frigerio, Fabrizio Cinquini, Silvia Pavoni, Elisabetta Moroni, Filippo Marchetti, Stefano Artin Serapian, Giorgio Colombo
Conformational Behavior of SARS-Cov-2 Spike Protein Variants: Evolutionary Jumps in Sequence Reverberate in Structural Dynamic Differences. Journal of chemical theory and computation (2023)
Om Shanker Tiwari, Ruth Aizen, Massimiliano Meli, Giorgio Colombo, Linda J W Shimon, Noam Tal, Ehud Gazit
Entropically-Driven Co-assembly of l-Histidine and l-Phenylalanine to Form Supramolecular Materials. ACS nano 17 (4) (2023)
Matteo Castelli, Filippo Marchetti, Sílvia Osuna, Ana Sofia F Oliveira, Adrian J Mulholland, Stefano Artin Serapian, Giorgio Colombo
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations. Journal of the American Chemical Society 146 (1) (2023)
Om Shanker Tiwari, Ruth Aizen, Massimiliano Meli, Giorgio Colombo, Linda J W Shimon, Noam Tal, Ehud Gazit
Entropically-Driven Co-assembly of l-Histidine and l-Phenylalanine to Form Supramolecular Materials. ACS nano 17 (4) (2023)
Matteo Castelli, Andrea Magni, Giorgio Bonollo, Silvia Pavoni, Francesco Frigerio, A Sofia F Oliveira, Fabrizio Cinquini, Stefano Artin Serapian, Giorgio Colombo
Molecular mechanisms of chaperone-directed protein folding: Insights from atomistic simulations. Protein science : a publication of the Protein Society 33 (3) (2023)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling 63 (1) (2022)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling 63 (1) (2022)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling 63 (1) (2022)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling (2022)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling 63 (1) (2022)
Angela Bitonti, Rita Puglisi, Massimiliano Meli, Stephen R Martin, Giorgio Colombo, Piero Andrea Temussi, Annalisa Pastore
Recipes for Inducing Cold Denaturation in an Otherwise Stable Protein. Journal of the American Chemical Society 144 (16) (2022)
Flavio Di Pisa, Stefano De Benedetti, Enrico Mario Alessandro Fassi, Mauro Bombaci, Renata Grifantini, Angelo Musicò, Roberto Frigerio, Angela Pontillo, Cinzia Rigo, Sandra Abelli, Romualdo Grande, Nadia Zanchetta, Davide Mileto, Alessandro Mancon, Alberto Rizzo, Alessandro Gori, Marina Cretich, Giorgio Colombo, Martino Bolognesi, Louise Jane Gourlay
Elucidating the 3D Structure of a Surface Membrane Antigen from Trypanosoma cruzi as a Serodiagnostic Biomarker of Chagas Disease. Vaccines 10 (1) (2022)
Matteo Castelli, Filippo Doria, Mauro Freccero, Giorgio Colombo, Elisabetta Moroni
Studying the Dynamics of a Complex G-Quadruplex System: Insights into the Comparison of MD and NMR Data. Journal of chemical theory and computation 18 (7) (2022)
Luca Torielli, Stefano Artin Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces. Journal of chemical information and modeling 63 (1) (2022)
Alice Triveri, Stefano A Serapian, Filippo Marchetti, Filippo Doria, Silvia Pavoni, Fabrizio Cinquini, Elisabetta Moroni, Andrea Rasola, Francesco Frigerio, Giorgio Colombo
SARS-CoV-2 Spike Protein Mutations and Escape from Antibodies: A Computational Model of Epitope Loss in Variants of Concern. Journal of chemical information and modeling 61 (9) (2021)
Francesco Manoli, Filippo Doria, Giorgio Colombo, Barbara Zambelli, Mauro Freccero, Ilse Manet
The Binding Pocket at the Interface of Multimeric Telomere G-quadruplexes: Myth or Reality? Chemistry (Weinheim an der Bergstrasse, Germany) 27 (45) (2021)
Mark R Woodford, Alexander J Baker-Williams, Rebecca A Sager, Sarah J Backe, Adam R Blanden, Fiza Hashmi, Priyanka Kancherla, Alessandro Gori, David R Loiselle, Matteo Castelli, Stefano Artin Serapian, Giorgio Colombo, Timothy A Haystead, Sandra M Jensen, William G Stetler-Stevenson, Stewart N Loh, Laura S Schmidt, W Marston Linehan, Alaji Bah, Dimitra Bourboulia, Gennady Bratslavsky, Mehdi Mollapour
The tumor suppressor folliculin inhibits lactate dehydrogenase A and regulates the Warburg effect. Nature structural & molecular biology 28 (8) (2021)
Stefano Artin Serapian, Alice Triveri, Filippo Marchetti, Matteo Castelli, Giorgio Colombo
Exploiting Folding and Degradation Machineries To Target Undruggable Proteins: What Can a Computational Approach Tell Us? ChemMedChem 16 (10) (2021)
Matteo Castelli, Stefano A Serapian, Filippo Marchetti, Alice Triveri, Valentina Pirota, Luca Torielli, Simona Collina, Filippo Doria, Mauro Freccero, Giorgio Colombo
New perspectives in cancer drug development: computational advances with an eye to design. RSC medicinal chemistry 12 (9) (2021)
Filippo Marchetti, Elisabetta Moroni, Alessandro Pandini, Giorgio Colombo
Machine Learning Prediction of Allosteric Drug Activity from Molecular Dynamics. The journal of physical chemistry letters 12 (15) (2021)
Mariarosaria Ferraro, Elisabetta Moroni, Emiliano Ippoliti, Silvia Rinaldi, Carlos Sanchez-Martin, Andrea Rasola, Luca F Pavarino, Giorgio Colombo
Machine Learning of Allosteric Effects: The Analysis of Ligand-Induced Dynamics to Predict Functional Effects in TRAP1. The journal of physical chemistry. B 125 (1) (2020)
Stefano Artin Serapian, Filippo Marchetti, Alice Triveri, Giulia Morra, Massimiliano Meli, Elisabetta Moroni, Giuseppe A Sautto, Andrea Rasola, Giorgio Colombo
The Answer Lies in the Energy: How Simple Atomistic Molecular Dynamics Simulations May Hold the Key to Epitope Prediction on the Fully Glycosylated SARS-CoV-2 Spike Protein. The journal of physical chemistry letters 11 (19) (2020)
Massimiliano Meli, Giulia Morra, Giorgio Colombo
Simple Model of Protein Energetics To Identify Ab Initio Folding Transitions from All-Atom MD Simulations of Proteins. Journal of chemical theory and computation 16 (9) (2020)
Stefano Artin Serapian, Giorgio Colombo
Designing Molecular Spanners to Throw in the Protein Networks. Chemistry (Weinheim an der Bergstrasse, Germany) 26 (21) (2020)
Antonella Paladino, Mark R Woodford, Sarah J Backe, Rebecca A Sager, Priyanka Kancherla, Michael A Daneshvar, Victor Z Chen, Dimitra Bourboulia, Elham F Ahanin, Chrisostomos Prodromou, Greta Bergamaschi, Alessandro Strada, Marina Cretich, Alessandro Gori, Marina Veronesi, Tiziano Bandiera, Renzo Vanna, Gennady Bratslavsky, Stefano A Serapian, Mehdi Mollapour, Giorgio Colombo
Chemical Perturbation of Oncogenic Protein Folding: from the Prediction of Locally Unstable Structures to the Design of Disruptors of Hsp90-Client Interactions. Chemistry (Weinheim an der Bergstrasse, Germany) 26 (43) (2020)
Silvia Rinaldi, Giorgio Colombo, Antonella Paladino
Mechanistic Model for the Hsp90-Driven Opening of Human Argonaute. Journal of chemical information and modeling 60 (3) (2020)
Filippo Marchetti, Riccardo Capelli, Francesca Rizzato, Alessandro Laio, Giorgio Colombo
The Subtle Trade-Off between Evolutionary and Energetic Constraints in Protein-Protein Interactions. The journal of physical chemistry letters 10 (7) (2019)
Antonella Paladino, Monica Civera, Flavio Curnis, Mayra Paolillo, Cesare Gennari, Umberto Piarulli, Angelo Corti, Laura Belvisi, Giorgio Colombo
The Importance of Detail: How Differences in Ligand Structures Determine Distinct Functional Responses in Integrin αv β3. Chemistry (Weinheim an der Bergstrasse, Germany) 25 (23) (2019)
Marina Cretich, Alessandro Gori, Ilda D'Annessa, Marcella Chiari, Giorgio Colombo
Peptides for Infectious Diseases: From Probe Design to Diagnostic Microarrays. Antibodies (Basel, Switzerland) 8 (1) (2019)
Marco Montefiori, Simona Pilotto, Chiara Marabelli, Elisabetta Moroni, Mariarosaria Ferraro, Stefano A Serapian, Andrea Mattevi, Giorgio Colombo
Impact of Mutations on NPAC Structural Dynamics: Mechanistic Insights from MD Simulations. Journal of chemical information and modeling 59 (9) (2019)
Ilda D'Annessa, Stefano Raniolo, Vittorio Limongelli, Daniele Di Marino, Giorgio Colombo
Ligand Binding, Unbinding, and Allosteric Effects: Deciphering Small-Molecule Modulation of HSP90. Journal of chemical theory and computation 15 (11) (2019)
Giulia Morra, Massimiliano Meli, Giorgio Colombo
How the Ligand-Induced Reorganization of Protein Internal Energies Is Coupled to Conformational Events. Journal of chemical theory and computation 14 (11) (2018)
Mariarosaria Ferraro, Ilda D'Annessa, Elisabetta Moroni, Giulia Morra, Antonella Paladino, Silvia Rinaldi, Federica Compostella, Giorgio Colombo
Allosteric Modulators of HSP90 and HSP70: Dynamics Meets Function through Structure-Based Drug Design. Journal of medicinal chemistry 62 (1) (2018)
Elisabetta Moroni, David A Agard, Giorgio Colombo
The Structural Asymmetry of Mitochondrial Hsp90 (Trap1) Determines Fine Tuning of Functional Dynamics. Journal of chemical theory and computation 14 (2) (2018)
Antonella Paladino, Filippo Marchetti, Luca Ponzoni, Giorgio Colombo
The Interplay between Structural Stability and Plasticity Determines Mutation Profiles and Chaperone Dependence in Protein Kinases. Journal of chemical theory and computation 14 (2) (2018)
Silvia Rinaldi, Alessandro Gori, Celeste Annovazzi, Erica E Ferrandi, Daniela Monti, Giorgio Colombo
Unraveling Energy and Dynamics Determinants to Interpret Protein Functional Plasticity: The Limonene-1,2-epoxide-hydrolase Case Study. Journal of chemical information and modeling 57 (4) (2017)
Riccardo Capelli, Elena Matterazzo, Marco Amabili, Claudio Peri, Alessandro Gori, Paola Gagni, Marcella Chiari, Ganjana Lertmemongkolchai, Marina Cretich, Martino Bolognesi, Giorgio Colombo, Louise J Gourlay
Designing Probes for Immunodiagnostics: Structural Insights into an Epitope Targeting Burkholderia Infections. ACS infectious diseases 3 (10) (2017)
Ilda D'Annessa, Sara Sattin, Jiahui Tao, Marzia Pennati, Carlos Sànchez-Martìn, Elisabetta Moroni, Andrea Rasola, Nadia Zaffaroni, David A Agard, Anna Bernardi, Giorgio Colombo
Design of Allosteric Stimulators of the Hsp90 ATPase as New Anticancer Leads. Chemistry (Weinheim an der Bergstrasse, Germany) 23 (22) (2017)
Antonella Paladino, Monica Civera, Laura Belvisi, Giorgio Colombo
High Affinity vs. Native Fibronectin in the Modulation of αvβ3 Integrin Conformational Dynamics: Insights from Computational Analyses and Implications for Molecular Design. PLoS computational biology 13 (1) (2017)
Riccardo Capelli, Filippo Marchetti, Guido Tiana, Giorgio Colombo
SAGE: A Fast Computational Tool for Linear Epitope Grafting onto a Foreign Protein Scaffold. Journal of chemical information and modeling 57 (1) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Giorgio Colombo