Jacob E Lemieux (Jacob Lemieux)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 19

Top Topics

Acute Respiratory Distress Syndrome

Respiratory Syndrome Coronavirus

Top Venues

Science translational medicine

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

medRxiv : the preprint server for health sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Yijia Li, Manish Chandra Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel, May Yee Liew, Gregory E Edelstein, Yumeko Kawano, Rockib Uddin, Rinki Deo, Caitlin Marino, Matthew A Getz, Zahra Reynolds, Mamadou Barry, Rebecca F Gilbert, Dessie Tien, Shruti Sagar, Tammy D Vyas, James P Flynn, Sarah P Hammond, Lewis A Novack, Bina Choi, Manuela Cernadas, Zachary Scott Wallace, Jeffrey A Sparks, Jatin M Vyas, Michael S Seaman, Gaurav D Gaiha, Mark J Siedner, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li
SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency. Science translational medicine 16 (731) (2024)
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Sergio Hernandez, Matteo Luban, Vera Maraspin, Petra Bogovič, Katarina Ogrinc, Eva Ruzič-Sabljič, Pascal Lapierre, Erica Lasek-Nesselquist, Navjot Singh, Radha Iyer, Dionysios Liveris, Kurt D Reed, John M Leong, John A Branda, Allen C Steere, Gary P Wormser, Franc Strle, Pardis C Sabeti, Ira Schwartz, Klemen Strle
Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination. PLoS pathogens 19 (8) (2023)
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Sergio Hernandez, Matteo Luban, Vera Maraspin, Petra Bogovic, Katarina Ogrinc, Eva Ruzic-Sabljic, Pascal Lapierre, Erica Lasek-Nesselquist, Navjot Singh, Radha Iyer, Dionysios Liveris, Kurt D Reed, John M Leong, John A Branda, Allen C Steere, Gary P Wormser, Franc Strle, Pardis C Sabeti, Ira Schwartz, Klemen Strle
Whole genome sequencing of Borrelia burgdorferi isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence. bioRxiv : the preprint server for biology (2023)
Lao-Tzu Allan-Blitz, Palak Shah, Gordon Adams, John A Branda, Jeffrey D Klausner, Robert Goldstein, Pardis C Sabeti, Jacob E Lemieux
Development of Cas13a-based assays for Neisseria gonorrhoeae detection and gyrase A determination. mSphere (2023)
Gregory E Edelstein, Julie Boucau, Rockib Uddin, Caitlin Marino, May Y Liew, Mamadou Barry, Manish Chandra Choudhary, Rebecca F Gilbert, Zahra Reynolds, Yijia Li, Dessie Tien, Shruti Sagar, Tammy D Vyas, Yumeko Kawano, Jeffrey A Sparks, Sarah P Hammond, Zachary Scott Wallace, Jatin M Vyas, Amy K Barczak, Jacob E Lemieux, Jonathan Z Li, Mark J Siedner
SARS-CoV-2 Virologic Rebound With Nirmatrelvir-Ritonavir Therapy : An Observational Study. Annals of internal medicine (2023)
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Sergio Hernandez, Matteo Luban, Vera Maraspin, Petra Bogovic, Katarina Ogrinc, Eva Ruzic-Sabljic, Pascal Lapierre, Erica Lasek-Nesselquist, Navjot Singh, Radha Iyer, Dionysios Liveris, Kurt D Reed, John M Leong, John A Branda, Allen C Steere, Gary P Wormser, Franc Strle, Pardis C Sabeti, Ira Schwartz, Klemen Strle
Whole genome sequencing of Borrelia burgdorferi isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence. bioRxiv : the preprint server for biology (2023)
Jacob E Lemieux, Weihua Huang, Nathan Hill, Tjasa Cerar, Lisa Freimark, Sergio Hernandez, Matteo Luban, Vera Maraspin, Petra Bogovic, Katarina Ogrinc, Eva Ruzic-Sabljic, Pascal Lapierre, Erica Lasek-Nesselquist, Navjot Singh, Radha Iyer, Dionysios Liveris, Kurt D Reed, John M Leong, John A Branda, Allen C Steere, Gary P Wormser, Franc Strle, Pardis C Sabeti, Ira Schwartz, Klemen Strle
Whole genome sequencing of Borrelia burgdorferi isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence. bioRxiv : the preprint server for biology (2023)
Fritz Obermeyer, Martin Jankowiak, Nikolaos Barkas, Stephen F Schaffner, Jesse D Pyle, Leonid A Yurkovetskiy, Matteo Bosso, Daniel J Park, Mehrtash Babadi, Bronwyn L MacInnis, Jeremy Luban, Pardis C Sabeti, Jacob E Lemieux
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science (New York, N.Y.) 376 (6599) (2022)
Jacob E Lemieux, Amy Li, Matteo Gentili, Cory A Perugino, Zoe Freeman Weiss, Kathryn Bowman, Pierre Ankomah, Hang Liu, Gregory D Lewis, Natasha Bitar, Taryn Lipiner, Nir Hacohen, Shiv S Pillai, Marcia B Goldberg
Vaccine serologic responses among transplant patients associate with COVID-19 infection and T peripheral helper cells. medRxiv : the preprint server for health sciences (2021)
Jacob E Lemieux, Jonathan Z Li
Uncovering Ways That Emerging Severe Acute Respiratory Syndrome Coronavirus 2 Lineages May Increase Transmissibility. The Journal of infectious diseases 223 (10) (2021)
Kim A Lagerborg, Erica Normandin, Matthew R Bauer, Gordon Adams, Katherine Figueroa, Christine Loreth, Adrianne Gladden-Young, Bennett M Shaw, Leah Pearlman, Erica S Shenoy, David Hooper, Virginia M Pierce, Kimon C Zachary, Daniel J Park, Bronwyn L MacInnis, Jacob E Lemieux, Pardis C Sabeti, Steven K Reilly, Katherine J Siddle
DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing. bioRxiv : the preprint server for biology (2021)
John Conklin, Matthew P Frosch, Shibani S Mukerji, Otto Rapalino, Mary Maher, Pamela W Schaefer, Michael H Lev, Ramon Gilberto González, Sudeshna Das, Samantha N Champion, Colin Magdamo, Pritha Sen, George Kyle Harrold, Haitham Alabsi, Erica Normandin, Bennett M Shaw, Jacob E Lemieux, Pardis C Sabeti, John A Branda, Emery Neal Brown, Michael Brandon Westover, Susie Y Huang, Brian L Edlow
Cerebral Microvascular Injury in Severe COVID-19. medRxiv : the preprint server for health sciences (2020)
Jacob E Lemieux, Katherine J Siddle, Bennett M Shaw, Christine Loreth, Stephen F Schaffner, Adrianne Gladden-Young, Gordon Adams, Timelia Fink, Christopher H Tomkins-Tinch, Lydia A Krasilnikova, Katherine C DeRuff, Melissa A Rudy, Matthew R Bauer, Kim A Lagerborg, Erica Normandin, Sinéad B Chapman, Steven K Reilly, Melis N Anahtar, Aaron E Lin, Amber Carter, Cameron A Myhrvold, Molly E Kemball, Sushma Chaluvadi, Caroline N Cusick, Katelyn Flowers, Anna E Neumann, Felecia Cerrato, Maha Reda Farhat, Damien Slater, Jason B Harris, John A Branda, David Hooper, Jessie M Gaeta, Travis P Baggett, James O'Connell, Andreas Gnirke, Tami D Lieberman, Anthony Philippakis, Meagan Burns, Catherine M Brown, Jeremy Luban, Edward T Ryan, Sarah E Turbett, Regina C LaRocque, William P Hanage, Glen R Gallagher, Lawrence C Madoff, Sandra Smole, Virginia M Pierce, Eric D Rosenberg, Pardis C Sabeti, Daniel J Park, Bronwyn L MacInnis
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events. Science (New York, N.Y.) 371 (6529) (2020)