Jeremy Schmutz (J Schmutz)

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 101

Top Venues

Nature plants

Nature communications

Nature

Proceedings of the National Academy of Sciences of the United States of America

DOE Joint Genome Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

DOE Joint Genome Institute Jun 01 2011

United States

Plant Program Lead

HudsonAlpha Institute for Biotechnology Aug 01 2008

United States

Faculty Investigator

Publications

Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, Christopher Plott, Kempton B Bryan, Zhigang Li, Shengqiang Shu, Joseph Carlson, David M Goodstein, Luis De Santiago, Ryan C Kirkbride, Sebastian Calleja, Todd Campbell, Jenny C Koebernick, Jane K Dever, Jodi A Scheffler, Duke Pauli, Johnie N Jenkins, Jack C McCarty, Melissa Williams, LoriBeth Boston, Jenell Webber, Joshua A Udall, Z Jeffrey Chen, Fred Bourland, Warwick N Stiller, Christopher A Saski, Jerry W Jenkins, Peng W Chee, Don C Jones, Jeremy Schmutz
Genome resources for three modern cotton lines guide future breeding efforts. Nature plants (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Cheng Li, David Wickell, Li-Yaung Kuo, Xueqing Chen, Bao Nie, Xuezhu Liao, Dan Peng, Jiaojiao Ji, Jerry Jenkins, Mellissa Williams, Shengqiang Shu, Christopher Plott, Kerrie Barry, Shanmugam Rajasekar, Jerry W Jenkins, Xiaoxu Han, Shichao Sun, Zhuangwei Hou, Weijun He, Guanhua Dai, Cheng Sun, Jeremy Schmutz, James H Leebens-Mack, Fay-Wei Li, Li Wang
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes. Proceedings of the National Academy of Sciences of the United States of America 121 (4) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Cheng Li, David Wickell, Li-Yaung Kuo, Xueqing Chen, Bao Nie, Xuezhu Liao, Dan Peng, Jiaojiao Ji, Jerry Jenkins, Mellissa Williams, Shengqiang Shu, Christopher Plott, Kerrie Barry, Shanmugam Rajasekar, Jerry W Jenkins, Xiaoxu Han, Shichao Sun, Zhuangwei Hou, Weijun He, Guanhua Dai, Cheng Sun, Jeremy Schmutz, James H Leebens-Mack, Fay-Wei Li, Li Wang
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes. Proceedings of the National Academy of Sciences of the United States of America 121 (4) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, Christopher Plott, Kempton B Bryan, Zhigang Li, Shengqiang Shu, Joseph Carlson, David M Goodstein, Luis De Santiago, Ryan C Kirkbride, Sebastian Calleja, Todd Campbell, Jenny C Koebernick, Jane K Dever, Jodi A Scheffler, Duke Pauli, Johnie N Jenkins, Jack C McCarty, Melissa Williams, LoriBeth Boston, Jenell Webber, Joshua A Udall, Z Jeffrey Chen, Fred Bourland, Warwick N Stiller, Christopher A Saski, Jerry W Jenkins, Peng W Chee, Don C Jones, Jeremy Schmutz
Genome resources for three modern cotton lines guide future breeding efforts. Nature plants 10 (6) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Cheng Li, David Wickell, Li-Yaung Kuo, Xueqing Chen, Bao Nie, Xuezhu Liao, Dan Peng, Jiaojiao Ji, Jerry Jenkins, Mellissa Williams, Shengqiang Shu, Christopher Plott, Kerrie Barry, Shanmugam Rajasekar, Jerry W Jenkins, Xiaoxu Han, Shichao Sun, Zhuangwei Hou, Weijun He, Guanhua Dai, Cheng Sun, Jeremy Schmutz, James H Leebens-Mack, Fay-Wei Li, Li Wang
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes. Proceedings of the National Academy of Sciences of the United States of America 121 (4) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Paul P Grabowski, Phat Dang, Jerry W Jenkins, Avinash Sreedasyam, Jenell Webber, Marshall Lamb, Qiong Zhang, Alvaro Sanz-Saez, Yucheng Feng, Victoria Bunting, Jayson Talag, Josh P Clevenger, Peggy Ozias-Akins, C Corley Holbrook, Ye Chu, Jerry W Jenkins, Jeremy Schmutz, Charles Chen, John T Lovell
Relics of interspecific hybridization retained in the genome of a drought-adapted peanut cultivar. G3 (Bethesda, Md.) (2024)
Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, Christopher Plott, Kempton B Bryan, Zhigang Li, Shengqiang Shu, Joseph Carlson, David M Goodstein, Luis De Santiago, Ryan C Kirkbride, Sebastian Calleja, Todd Campbell, Jenny C Koebernick, Jane K Dever, Jodi A Scheffler, Duke Pauli, Johnie N Jenkins, Jack C McCarty, Melissa Williams, LoriBeth Boston, Jenell Webber, Joshua A Udall, Z Jeffrey Chen, Fred Bourland, Warwick N Stiller, Christopher A Saski, Jerry W Jenkins, Peng W Chee, Don C Jones, Jeremy Schmutz
Genome resources for three modern cotton lines guide future breeding efforts. Nature plants 10 (6) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Mary Jane C Espina, John T Lovell, Jerry Jenkins, Shengqiang Shu, Avinash Sreedasyam, Brandon D Jordan, Jenell Webber, LoriBeth Boston, Tomáš Brůna, Jayson Talag, David Goodstein, Jane Grimwood, Gary Stacey, Steven B Cannon, Aaron J Lorenz, Jeremy Schmutz, Robert M Stupar
Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant journal : for cell and molecular biology (2024)
Cheng Li, David Wickell, Li-Yaung Kuo, Xueqing Chen, Bao Nie, Xuezhu Liao, Dan Peng, Jiaojiao Ji, Jerry Jenkins, Mellissa Williams, Shengqiang Shu, Christopher Plott, Kerrie Barry, Shanmugam Rajasekar, Jerry W Jenkins, Xiaoxu Han, Shichao Sun, Zhuangwei Hou, Weijun He, Guanhua Dai, Cheng Sun, Jeremy Schmutz, James H Leebens-Mack, Fay-Wei Li, Li Wang
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes. Proceedings of the National Academy of Sciences of the United States of America 121 (4) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, Christopher Plott, Kempton B Bryan, Zhigang Li, Shengqiang Shu, Joseph Carlson, David M Goodstein, Luis De Santiago, Ryan C Kirkbride, Sebastian Calleja, Todd Campbell, Jenny C Koebernick, Jane K Dever, Jodi A Scheffler, Duke Pauli, Johnie N Jenkins, Jack C McCarty, Melissa Williams, LoriBeth Boston, Jenell Webber, Joshua A Udall, Z Jeffrey Chen, Fred Bourland, Warwick N Stiller, Christopher A Saski, Jerry W Jenkins, Peng W Chee, Don C Jones, Jeremy Schmutz
Genome resources for three modern cotton lines guide future breeding efforts. Nature plants 10 (6) (2024)
Adam L Healey, O Garsmeur, John T Lovell, Shengqiang Shu, Avinash Sreedasyam, Jerry W Jenkins, Christopher Plott, Nathalie Piperidis, N Pompidor, Victor Llaca, Cushla J Metcalfe, Jaroslav Dolezel, P Cápal, J W Carlson, Jean-Yves Hoarau, C Hervouet, C Zini, Anne Diévart, A Lipzen, M Williams, L B Boston, J Webber, K Keymanesh, S Tejomurthula, S Rajasekar, Radosław Suchecki, Agnelo Furtado, G May, P Parakkal, Blake A Simmons, Kerrie W Barry, Robert James Henry, Jerry W Jenkins, Karen S Aitken, Jeremy Schmutz, Angélique D'Hont
The complex polyploid genome architecture of sugarcane. Nature 628 (8009) (2024)
Avinash Sreedasyam, John T Lovell, Sujan Mamidi, Sameer Khanal, Jerry W Jenkins, Christopher Plott, Kempton B Bryan, Zhigang Li, Shengqiang Shu, Joseph Carlson, David M Goodstein, Luis De Santiago, Ryan C Kirkbride, Sebastian Calleja, Todd Campbell, Jenny C Koebernick, Jane K Dever, Jodi A Scheffler, Duke Pauli, Johnie N Jenkins, Jack C McCarty, Melissa Williams, LoriBeth Boston, Jenell Webber, Joshua A Udall, Z Jeffrey Chen, Fred Bourland, Warwick N Stiller, Christopher A Saski, Jerry W Jenkins, Peng W Chee, Don C Jones, Jeremy Schmutz
Genome resources for three modern cotton lines guide future breeding efforts. Nature plants 10 (6) (2024)
Andrei Stecca Steindorff, Maria Victoria Aguilar Pontes, Aaron J Robinson, Bill Andreopoulos, Kurt M LaButti, Alan Kuo, Stephen J Mondo, Robert Riley, Robert Otillar, Sajeet Haridas, Anna Lipzen, Jerry W Jenkins, Jeremy Schmutz, Alicia Clum, Ian D Reid, Marie-Claude Moisan, Gregory Butler, Thi Truc Minh Nguyen, Ken Dewar, Gavin C Conant, Elodie Drula, Bernard Henrissat, Colleen M Hansel, Steven Singer, Miriam I Hutchinson, Ronald P de Vries, Donald O Natvig, Amy J Powell, Adrian Tsang, Igor V Grigoriev
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses. Communications biology 7 (1) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie W Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen, Maria Luisa Chiusano, Emanuela Dattolo, Jerry W Jenkins, Guifen He, Jerry W Jenkins, Marina Khachaturyan, Lazaro Marín-Guirao, Attila Mesterházy, Danish-Daniel Muhd, Jessica Pazzaglia, Christopher Plott, Shanmugam Rajasekar, Stephane Rombauts, Miriam Ruocco, Alison Dawn Scott, Min Pau Tan, Jozefien Van de Velde, Bartel Vanholme, Jenell Webber, Li Lian Wong, Mi Yan, Yeong Yik Sung, Polina Yu Novikova, Jeremy Schmutz, Thorsten B H Reusch, Gabriele Procaccini, Jeanine L Olsen, Yves Van de Peer
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature plants 10 (2) (2024)
Jessen V Bredeson, Austin B Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E Miller, Jessica B Lyons, Sanjit S Batra, Joseph Park, Kodiak C Berkoff, Christopher Plott, Jerry W Jenkins, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M Sachs, Daniel R Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J Ryan, Robert D Denton, John H Malone, John B Wallingford, Aaron F Straight, Rebecca Heald, Dirk Hockemeyer, Richard M Harland, Daniel S Rokhsar
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. Nature communications 15 (1) (2024)
Ran Zhou, Jerry W Jenkins, Yibing Zeng, Shengqiang Shu, Hosung Jang, Scott A Harding, Melissa Williams, Christopher Plott, Kerrie W Barry, Maxim Koriabine, Mojgan Amirebrahimi, Jayson Talag, Shanmugam Rajasekar, Jerry W Jenkins, Robert J Schmitz, R Kelly Dawe, Jeremy Schmutz, Chung-Jui Tsai
Haplotype-resolved genome assembly of Populus tremula × P. alba reveals aspen-specific megabase satellite DNA. The Plant journal : for cell and molecular biology (2023)
Neal Wepking Tilhou, Hari P Poudel, John Lovell, Sujan Mamidi, Jeremy Schmutz, Christopher Daum, Matthew Zane, Yuko Yoshinaga, Anna Lipzen, Michael D Casler
Genomic prediction of switchgrass winter survivorship across diverse lowland populations. G3 (Bethesda, Md.) (2023)
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jerry W Jenkins, Jerry W Jenkins, Christopher Daum, Kerrie Barry, Joseph Carlson, Shengqiang Shu, Jeremy Phillips, Mojgan Amirebrahimi, Matthew Zane, Mei Wang, David Goodstein, Fabian B Haas, Manuel Hiss, Pierre-François Perroud, Sara S Jawdy, Yongil Yang, Rongbin Hu, Jenifer Johnson, Janette Kropat, Sean D Gallaher, Anna Lipzen, Eugene V Shakirov, Xiaoyu Weng, Ivone Torres-Jerez, Brock Weers, Daniel Conde, Marilia R Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, Christine Shyu, Pu Huang, Jose Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, Alyssa A Carrell, Jin-Gui Chen, Mariano Perales, Kankshita Swaminathan, Isabel Allona, Dario Grattapaglia, Elizabeth A Cooper, Dorothea Tholl, John P Vogel, David J Weston, Xiaohan Yang, Thomas P Brutnell, Elizabeth A Kellogg, Ivan R Baxter, Michael Udvardi, Yuhong Tang, Todd C Mockler, Thomas E Juenger, John E Mullet, Stefan Andreas Rensing, Gerald A Tuskan, Sabeeha S Merchant, Gary Stacey, Jeremy Schmutz
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic acids research (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants (2023)
Lei Yu, Marina Khachaturyan, Michael Matschiner, Adam L Healey, Diane Bauer, Brenda Cameron, Mathieu Cusson, J Emmett Duffy, Fredrick Joel Fodrie, Diana Gill, Jerry W Jenkins, Masakazu Hori, Kevin A Hovel, A Randall Hughes, Marlene Jahnke, Jerry W Jenkins, Keykhosrow Keymanesh, Claudia Kruschel, Sujan Mamidi, Damian Michael Menning, Per-Olav Moksnes, Masahiro Nakaoka, Christa Pennacchio, Katrin Reiss, Francesca Rossi, Jennifer L Ruesink, Stewart T Schultz, Sandra Looman Talbot, Richard Kazimierz Frank Unsworth, David H Ward, Tal Dagan, Jeremy Schmutz, Jonathan A Eisen, John J Stachowicz, Yves Van de Peer, Jeanine L Olsen, Thorsten B H Reusch
Author Correction: Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nature plants (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Shuping Jiao, Sujan Mamidi, Mark A Chamberlin, Mary Beatty, Shawn Thatcher, Kevin D Simcox, Fanna Maina, Hu Wang-Nan, Gurmukh S Johal, Lynn Heetland, Sandeep R Marla, Robert B Meeley, Jeremy Schmutz, Geoffrey P Morris, Dilbag S Multani
Parallel tuning of semi-dwarfism via differential splicing of Brachytic1 in commercial maize and smallholder sorghum. The New phytologist (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Degao Liu, Dan Tang, Meng Xie, Jin Zhang, Longmei Zhai, Jiangping Mao, Chao Luo, Anna Lipzen, Yu Zhang, Emily Savage, Guoliang Yuan, Hao-Bo Guo, Dimiru Tadesse, Rongbin Hu, Sara S Jawdy, Hua Cheng, Linling Li, Huseyin Yer, Miranda M Clark, Huayu Sun, Jiyuan Shi, Roshani Budhathoki, Rahul Kumar, Troy Kamuda, Yanjun Li, Christa Pennacchio, Kerrie W Barry, Jeremy Schmutz, Rajiv J Berry, Wellington Muchero, Jin-Gui Chen, Yi Li, Gerald A Tuskan, Xiaohan Yang
Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus. Plant physiology 191 (3) (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Lei Yu, Marina Khachaturyan, Michael Matschiner, Adam L Healey, Diane Bauer, Brenda Cameron, Mathieu Cusson, J Emmett Duffy, Fredrick Joel Fodrie, Diana Gill, Jerry W Jenkins, Masakazu Hori, Kevin A Hovel, A Randall Hughes, Marlene Jahnke, Jerry W Jenkins, Keykhosrow Keymanesh, Claudia Kruschel, Sujan Mamidi, Damian Michael Menning, Per-Olav Moksnes, Masahiro Nakaoka, Christa Pennacchio, Katrin Reiss, Francesca Rossi, Jennifer L Ruesink, Stewart T Schultz, Sandra Looman Talbot, Richard Kazimierz Frank Unsworth, David H Ward, Tal Dagan, Jeremy Schmutz, Jonathan A Eisen, John J Stachowicz, Yves Van De Peer, Jeanine L Olsen, Thorsten B H Reusch
Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nature plants (2023)
Li Lei, Sean P Gordon, Lifeng Liu, Nir Sade, John T Lovell, Maria Del Mar Rubio Wilhelmi, Vasanth Singan, Avinash Sreedasyam, Rachel Hestrin, Jeremy Phillips, Bryan T Hernandez, Kerrie Barry, Shengqiang Shu, Jerry W Jenkins, Jeremy Schmutz, David M Goodstein, Roger Thilmony, Eduardo Blumwald, John P Vogel
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. G3 (Bethesda, Md.) (2023)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice A Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel Owen Purvine, Samuel O'Donnell, Kerrie W Barry, Jerry W Jenkins, Daniela Strenkert, Janette Kropat, Christopher Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell 35 (2) (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Xiaoyu Weng, Haili Song, Avinash Sreedasyam, Taslima Haque, Li Zhang, Cindy Chen, Yuko Yoshinaga, Melissa Williams, Ronan C O'Malley, Jerry W Jenkins, Jeremy Schmutz, Thomas E Juenger
Transcriptome and DNA methylome divergence of inflorescence development between two ecotypes in Panicum hallii. Plant physiology (2023)
Govinal Badiger Bhaskara, Taslima Haque, Jason E Bonnette, Joseph D Napier, Diane Bauer, Jeremy Schmutz, Thomas E Juenger
Evolutionary analyses of gene expression divergence in Panicum hallii: exploring constitutive and plastic responses using reciprocal transplants. Molecular biology and evolution (2023)
Katrien M Devos, Peng Qi, Bochra A Bahri, Davis M Gimode, Katharine Jenike, Samuel J Manthi, Dagnachew Lule, Thomas Lux, Liliam Martinez-Bello, Thomas H Pendergast Iv, Christopher Plott, Dipnarayan Saha, Gurjot S Sidhu, Avinash Sreedasyam, Xuewen Wang, Hao Wang, Hallie Wright, Jianxin Zhao, Santosh Deshpande, Santie de Villiers, Mathews M Dida, Jerry W Jenkins, Jerry W Jenkins, John T Lovell, Klaus F X Mayer, Emmarold E Mneney, Henry F Ojulong, Michael C Schatz, Jeremy Schmutz, Bo Song, Kassahun Tesfaye, Damaris Achieng Odeny
Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature communications 14 (1) (2023)
Neal Wepking Tilhou, Hari P Poudel, John Lovell, Sujan Mamidi, Jeremy Schmutz, Christopher Daum, Matthew Zane, Yuko Yoshinaga, Anna Lipzen, Michael D Casler
Genomic prediction of switchgrass winter survivorship across diverse lowland populations. G3 (Bethesda, Md.) 13 (3) (2023)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
John T Lovell, Avinash Sreedasyam, Michael Eric Schranz, Melissa A Wilson, Joseph W Carlson, Alex E Harkess, David Mark Emms, David M Goodstein, Jeremy Schmutz
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes. eLife 11 (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Timothy B Yates, Kai Feng, Jin Zhang, Vasanth Singan, Sara S Jawdy, Priya Ranjan, Paul E Abraham, Kerrie Barry, Anna Lipzen, Chongle Pan, Jeremy Schmutz, Jin-Gui Chen, Gerald A Tuskan, Wellington Muchero
The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in Populus trichocarpa. Genome biology and evolution 13 (9) (2022)
Yongbin Zhuang, Xutong Wang, Xianchong Li, Junmei Hu, Lichuan Fan, Jacob B Landis, Steven B Cannon, Jerry W Jenkins, Jeremy Schmutz, Scott A Jackson, Jeffrey J Doyle, Xian Sheng Zhang, Dajian Zhang, Jianxin Ma
Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition. Nature plants 8 (3) (2022)
Joseph D Napier, Paul P Grabowski, John T Lovell, Jason Bonnette, Sujan Mamidi, Maria Jose Gomez-Hughes, Acer VanWallendael, Xiaoyu Weng, Lori H Handley, Min K Kim, Arvid R Boe, Philip A Fay, Felix B Fritschi, Julie D Jastrow, John Lloyd-Reilley, David B Lowry, Roser Matamala, Robert B Mitchell, Francis M Rouquette, Yanqi Wu, Jenell Webber, Teresa Jones, Kerrie Barry, Jerry W Jenkins, Jeremy Schmutz, Thomas E Juenger
A generalist-specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range. Proceedings of the National Academy of Sciences of the United States of America 119 (15) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
D Blaine Marchant, Guang Chen, Shengguan Cai, Fei Chen, Peter Schafran, Jerry W Jenkins, Shengqiang Shu, Christopher Plott, Jenell Webber, John T Lovell, Guifen He, Laura Sandor, Melissa Williams, Shanmugam Rajasekar, Adam Healey, Kerrie Barry, Yinwen Zhang, Emily Sessa, Rijan R Dhakal, Paul G Wolf, Alex Harkess, Fay-Wei Li, Clemens Rössner, Annette Becker, Lydia Gramzow, Dawei Xue, Yuhuan Wu, Tao Tong, Yuanyuan Wang, Fei Dai, Shuijin Hua, Hua Wang, Shengchun Xu, Fei Xu, Honglang Duan, Günter Theißen, Michael R McKain, Zheng Li, Michael T W McKibben, Michael S Barker, Robert J Schmitz, Dennis W Stevenson, Cecilia Zumajo-Cardona, Barbara A Ambrose, James H Leebens-Mack, Jerry W Jenkins, Jeremy Schmutz, Pamela S Soltis, Douglas Edward Soltis, Zhong-Hua Chen
Dynamic genome evolution in a model fern. Nature plants 8 (9) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Kebede T Muleta, Terry Felderhoff, Noah D Winans, Rachel Walstead, Jean Rigaud Charles, J Scott Armstrong, Sujan Mamidi, Christopher Plott, John P Vogel, Peggy G Lemaux, Todd C Mockler, Jerry W Jenkins, Jeremy Schmutz, Gael Pressoir, Geoffrey P Morris
The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange. Science advances 8 (6) (2022)
Degao Liu, Dan Tang, Meng Xie, Jin Zhang, Longmei Zhai, Jiangping Mao, Chao Luo, Anna Lipzen, Yu Zhang, Emily Savage, Guoliang Yuan, Hao-Bo Guo, Dimiru Tadesse, Rongbin Hu, Sara S Jawdy, Hua Cheng, Linling Li, Huseyin Yer, Miranda M Clark, Huayu Sun, Jiyuan Shi, Roshani Budhathoki, Rahul Kumar, Troy Kamuda, Yanjun Li, Christa Pennacchio, Kerrie W Barry, Jeremy Schmutz, Rajiv J Berry, Wellington Muchero, Jin-Gui Chen, Yi Li, Gerald A Tuskan, Xiaohan Yang
Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus. Plant physiology (2022)
Alyssa A Carrell, Travis J Lawrence, Kristine Grace M Cabugao, Dana L Carper, Dale A Pelletier, Jun Hyung Lee, Sara S Jawdy, Jerry W Jenkins, Jeremy Schmutz, Paul J Hanson, A Jonathan Shaw, David J Weston
Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming. The New phytologist 234 (6) (2022)
William P Bewg, Scott A Harding, Nancy L Engle, Brajesh N Vaidya, Ran Zhou, Jacob Reeves, Thomas W Horn, Nirmal Joshee, Jerry W Jenkins, Shengqiang Shu, Kerrie W Barry, Yuko Yoshinaga, Jerry W Jenkins, Robert J Schmitz, Jeremy Schmutz, Timothy J Tschaplinski, Chung-Jui Tsai
Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA. Plant physiology 189 (2) (2022)
Tal J Shalev, Omnia Gamal El-Dien, Macaire Man Saint Yuen, Shu Shengqiang, Shaun D Jackman, Rene L Warren, Lauren Coombe, Lise van der Merwe, Ada Stewart, Lori B Boston, Christopher Plott, Jerry W Jenkins, Guifen He, Juying Yan, Mi Yan, Jie Guo, Jesse W Breinholt, Leandro G Neves, Jerry W Jenkins, Loren H Rieseberg, Jeremy Schmutz, Inanc Birol, Matias Kirst, Alvin D Yanchuk, Carol E Ritland, John H Russell, Joerg Bohlmann
The western redcedar genome reveals low genetic diversity in a self-compatible conifer. Genome research 32 (10) (2022)
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Lingling Jin, Robert VanBuren, Marivi Colle, Hong An, R Shawn Abrahams, Jacob D Washburn, Xinshuai Qi, Kerrie W Barry, Christopher Daum, Shengqiang Shu, Jeremy Schmutz, David Sankoff, Michael S Barker, Eric Lyons, Joseph Chris Pires, Gavin C Conant
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome research 31 (5) (2021)
Huang Li, Xiao Hu, John T Lovell, Paul P Grabowski, Sujan Mamidi, Cindy Chen, Mojgan Amirebrahimi, Indika Kahanda, Brendan Mumey, Kerrie Barry, David Kudrna, Jeremy Schmutz, Jennifer Lachowiec, Chaofu Lu
Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping. The plant genome 14 (2) (2021)
Martin Mascher, Thomas Wicker, Jerry W Jenkins, Christopher Plott, Thomas M Lux, Chu Shin Koh, Jennifer Ens, Heidrun Gundlach, Lori B Boston, Zuzana Tulpová, Samuel Holden, Inmaculada Hernández-Pinzón, Uwe Scholz, Klaus F X Mayer, Manuel Spannagl, Curtis J Pozniak, Andrew G Sharpe, Hana Šimková, Matthew J Moscou, Jerry W Jenkins, Jeremy Schmutz, Nils Stein
Long-read sequence assembly: a technical evaluation in barley. The Plant cell 33 (6) (2021)
John T Lovell, Alice H MacQueen, Sujan Mamidi, Jason Bonnette, Jerry W Jenkins, Joseph D Napier, Avinash Sreedasyam, Adam Healey, Adam Session, Shengqiang Shu, Kerrie Barry, Stacy Bonos, LoriBeth Boston, Christopher Daum, Shweta Deshpande, Aren Ewing, Paul P Grabowski, Taslima Haque, Melanie Harrison, Jiming Jiang, David A Kudrna, Anna Lipzen, Thomas H Pendergast Iv, Chris Plott, Peng Qi, Christopher A Saski, Eugene V Shakirov, David Sims, Manoj Sharma, Rita Sharma, Ada Stewart, Vasanth R Singan, Yuhong Tang, Sandra Thibivillier, Jenell Webber, Xiaoyu Weng, Melissa Williams, Guohong Albert Wu, Yuko Yoshinaga, Matthew Zane, Li Zhang, Jiyi Zhang, Kathrine D Behrman, Arvid R Boe, Philip A Fay, Felix B Fritschi, Julie D Jastrow, John Lloyd-Reilley, Juan Manuel Martínez-Reyna, Roser Matamala, Robert B Mitchell, Francis M Rouquette, Pamela C Ronald, Malay Saha, Christian M Tobias, Michael K Udvardi, Rod A Wing, Yanqi Wu, Laura E Bartley, Michael Casler, Katrien M Devos, David B Lowry, Daniel S Rokhsar, Jerry W Jenkins, Thomas E Juenger, Jeremy Schmutz
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature 590 (7846) (2021)
Sarah B Carey, Jerry W Jenkins, John T Lovell, Florian Maumus, Avinash Sreedasyam, Adam C Payton, Shengqiang Shu, George P Tiley, Noe Fernandez Pozo, Adam L Healey, Kerrie W Barry, Cindy Chen, Mei Wang, Anna Lipzen, Christopher Daum, Christopher A Saski, Jordan C McBreen, Roth E Conrad, Leslie M Kollar, Sanna Olsson, Sanna Huttunen, Jacob B Landis, J Gordon Burleigh, Norman J Wickett, Matthew G Johnson, Stefan Andreas Rensing, Jerry W Jenkins, Jeremy Schmutz, Stuart F McDaniel
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science advances 7 (27) (2021)
Adam L Healey, Mervyn Shepherd, Graham John King, Jacob B Butler, Jules S Freeman, David J Lee, Brad M Potts, Orzenil B Silva-Junior, Abdul Baten, Jerry W Jenkins, Shengqiang Shu, John T Lovell, Avinash Sreedasyam, Jerry W Jenkins, Agnelo Furtado, Dario Grattapaglia, Kerrie W Barry, Hope Hundley, Blake A Simmons, Jeremy Schmutz, René E Vaillancourt, Robert James Henry
Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Communications biology 4 (1) (2021)
Benjamin J Cole, Dominique Bergmann, Crysten E Blaby-Haas, Ian K Blaby, Kristofer E Bouchard, Siobhan M Brady, Doina Ciobanu, Devin Coleman-Derr, Samuel Leiboff, Jenny C Mortimer, Tatsuya Nobori, Seung Y Rhee, Jeremy Schmutz, Blake A Simmons, Anup K Singh, Neelima Sinha, John P Vogel, Ronan C O'Malley, Axel Visel, Diane E Dickel
Plant single-cell solutions for energy and the environment. Communications biology 4 (1) (2021)
Sean D Gallaher, Rory J Craig, Iniyan Ganesan, Samuel Owen Purvine, Sean R McCorkle, Jerry W Jenkins, Daniela Strenkert, Lital Davidi, Melissa S Roth, Tim L Jeffers, Mary S Lipton, Krishna K Niyogi, Jeremy Schmutz, Steven M Theg, Crysten E Blaby-Haas, Sabeeha S Merchant
Widespread polycistronic gene expression in green algae. Proceedings of the National Academy of Sciences of the United States of America 118 (7) (2021)
Alyssa A Carrell, Dušan Veličković, Travis J Lawrence, Benjamin P Bowen, Katherine B Louie, Dana L Carper, Rosalie K Chu, Hugh D Mitchell, Galya Orr, Lye Meng Markillie, Sara S Jawdy, Jane Grimwood, A Jonathan Shaw, Jeremy Schmutz, Trent R Northen, Christopher R Anderton, Dale A Pelletier, David J Weston
Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The ISME journal (2021)
Samira Mafi Moghaddam, Atena Oladzad, Chushin Koh, Larissa Ramsay, John P Hart, Sujan Mamidi, Genevieve M Hoopes, Avinash Sreedasyam, Andrew Wiersma, Dongyan Zhao, Jerry W Jenkins, John P Hamilton, Jerry W Jenkins, Brieanne Vaillancourt, Joshua C Wood, Jeremy Schmutz, Sateesh Kagale, Timothy Porch, Kirstin E Bett, Carol Robin Buell, Phillip E McClean
The tepary bean genome provides insight into evolution and domestication under heat stress. Nature communications 12 (1) (2021)
John T Lovell, Nolan B Bentley, Gaurab Bhattarai, Jerry W Jenkins, Avinash Sreedasyam, Yanina Alarcon, Clive Bock, Lori Beth Boston, Joseph Carlson, Kimberly Cervantes, Kristen Clermont, Sara Duke, Nick Krom, Keith Kubenka, Sujan Mamidi, Christopher P Mattison, Maria J Monteros, Cristina Pisani, Christopher Plott, Shanmugam Rajasekar, Hormat Shadgou Rhein, Charles Rohla, Mingzhou Song, Rolston St Hilaire, Shengqiang Shu, Lenny Wells, Jenell Webber, Richard J Heerema, Patricia E Klein, Patrick Conner, Xinwang Wang, L J Grauke, Jerry W Jenkins, Jeremy Schmutz, Jennifer J Randall
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. Nature communications 12 (1) (2021)
Noe Fernandez Pozo, Fabian B Haas, Rabea Meyberg, Kristian Karsten Ullrich, Manuel Hiss, Pierre-François Perroud, Sebastian Hanke, Viktor Kratz, Adrian F Powell, Eleanor F Vesty, Christopher G Daum, Matthew Zane, Anna Lipzen, Avinash Sreedasyam, Jane Grimwood, Juliet C Coates, Kerrie W Barry, Jeremy Schmutz, Lukas A Mueller, Stefan Andreas Rensing
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. The Plant journal : for cell and molecular biology 102 (1) (2020)
Alice H MacQueen, Jeffrey W White, Rian Lee, Juan M Osorno, Jeremy Schmutz, Phillip N Miklas, James R Myers, Phillip E McClean, Thomas E Juenger
Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean. Genetics 215 (1) (2020)
Sujan Mamidi, Adam Healey, Pu Huang, Jerry W Jenkins, Jerry W Jenkins, Kerrie Barry, Avinash Sreedasyam, Shengqiang Shu, John T Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu, Cindy Chen, Jenifer Johnson, Hitoshi Sakakibara, Takatoshi Kiba, Tetsuya Sakurai, Rachel Tavares, Dmitri A Nusinow, Ivan Baxter, Jeremy Schmutz, Thomas P Brutnell, Elizabeth A Kellogg
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature biotechnology 38 (10) (2020)
Ran Zhou, David Macaya-Sanz, Jeremy Schmutz, Jerry W Jenkins, Gerald A Tuskan, Stephen P DiFazio
Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa. Genes 11 (8) (2020)
Jennifer Bragg, Pernell Tomasi, Li Zhang, Tina Williams, Delilah F Wood, John T Lovell, Adam L Healey, Jeremy Schmutz, Jason E Bonnette, Prisca Cheng, Lisa Chanbusarakum, Thomas E Juenger, Christian M Tobias
Environmentally responsive QTL controlling surface wax load in switchgrass. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 133 (11) (2020)
Murukarthick Jayakodi, Sudharsan Padmarasu, Georg Haberer, Venkata Suresh Bonthala, Heidrun Gundlach, Cécile Monat, Thomas M Lux, Nadia Kamal, Daniel Lang, Axel Himmelbach, Jennifer Ens, Xiao-Qi Zhang, Tefera T Angessa, Gaofeng Zhou, Cong Tan, Camilla Hill, Penghao Wang, Miriam Schreiber, Lori B Boston, Christopher Plott, Jerry W Jenkins, Yu Guo, Anne Fiebig, Hikmet Budak, Dongdong Xu, Jing Zhang, Chunchao Wang, Jane Grimwood, Jeremy Schmutz, Ganggang Guo, Guoping Zhang, Keiichi Mochida, Takashi Hirayama, Kazuhiro Sato, Kenneth J Chalmers, Peter Langridge, Robbie Waugh, Curtis J Pozniak, Uwe Scholz, Klaus F X Mayer, Manuel Spannagl, Chengdao Li, Martin Mascher, Nils Stein
The barley pan-genome reveals the hidden legacy of mutation breeding. Nature 588 (7837) (2020)
Therese Mitros, Adam M Session, Brandon T James, Guohong Albert Wu, Mohammad B Belaffif, Lindsay V Clark, Shengqiang Shu, Hongxu Dong, Adam Barling, Jessica R Holmes, Jessica E Mattick, Jessen V Bredeson, Siyao Liu, Kerrie Farrar, Katarzyna Głowacka, Stanisław Jeżowski, Kerrie Barry, Won Byoung Chae, John A Juvik, Justin Gifford, Adebosola Oladeinde, Toshihiko Yamada, Jerry W Jenkins, Nicholas H Putnam, José J De Vega, Susanne Barth, Manfred Klaas, Trevor Hodkinson, Lai-Geng Li, Xiaoli Jin, Junhua Peng, Chang Yeon Yu, Kweon Heo, Ji Hye Yoo, Bimal Kumar Ghimire, Iain S Donnison, Jeremy Schmutz, Matthew E Hudson, Erik J Sacks, Stephen P Moose, Kankshita Swaminathan, Daniel S Rokhsar
Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature communications 11 (1) (2020)
Oliver Xiaoou Dong, Shu Yu, Rashmi Jain, Nan Zhang, Phat Q Duong, Corinne Butler, Yan Li, Anna Lipzen, Joel A Martin, Kerrie W Barry, Jeremy Schmutz, Li Tian, Pamela C Ronald
Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nature communications 11 (1) (2020)
Sean P Gordon, Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S Tartaglio, Adam Session, Joel A Martin, Amy Cartwright, Andrew Katz, Vasanth R Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H Doonan, Luis Alejandro Jose Mur, Chris Plott, Jerry W Jenkins, Samuel P Hazen, Scott J Lee, Shengqiang Shu, David M Goodstein, Daniel S Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P Vogel
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature communications 11 (1) (2020)
Oleg Simakov, Ferdinand Marletaz, Jia-Xing Yue, Brendan L O'Connell, Jerry W Jenkins, Alexander Brandt, Robert Calef, Che-Huang Tung, Tzu-Kai Huang, Jeremy Schmutz, Noriyuki Satoh, Jr-Kai Yu, Nicholas H Putnam, Richard E Green, Daniel S Rokhsar
Deeply conserved synteny resolves early events in vertebrate evolution. Nature ecology & evolution 4 (6) (2020)
David B Lowry, John T Lovell, Li Zhang, Jason Bonnette, Philip A Fay, Robert B Mitchell, John Lloyd-Reilley, Arvid R Boe, Yanqi Wu, Francis M Rouquette, Richard L Wynia, Xiaoyu Weng, Kathrine D Behrman, Adam Healey, Kerrie Barry, Anna Lipzen, Diane Bauer, Aditi Sharma, Jerry Jenkins, Jeremy Schmutz, Felix B Fritschi, Thomas E Juenger
QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient. Proceedings of the National Academy of Sciences of the United States of America 116 (26) (2019)
Jessy L Labbé, Wellington Muchero, Olaf Czarnecki, Juan Wang, Xiaoping Wang, Anthony C Bryan, Kaijie Zheng, Yongil Yang, Meng Xie, Jin Zhang, Dongfang Wang, Peter Meidl, Hemeng Wang, Jennifer L Morrell-Falvey, Kevin R Cope, Lucas G S Maia, Jean-Michel Ané, Ritesh Mewalal, Sara S Jawdy, Lee E Gunter, Wendy Schackwitz, Joel A Martin, François Le Tacon, Ting Li, Zhihao Zhang, Priya Ranjan, Erika Lindquist, Xiaohan Yang, Daniel A Jacobson, Timothy J Tschaplinski, Kerrie Barry, Jeremy Schmutz, Jin-Gui Chen, Gerald A Tuskan
Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase. Nature plants 5 (7) (2019)
Steven R Larson, Lee DeHaan, Jesse A Poland, Xiaofei Zhang, Kevin M Dorn, Traci Hagedorn, James A Anderson, Jeremy Schmutz, Jerry W Jenkins, Jerry W Jenkins, Shengqiang Shu, Jared L Crain, Matthew D Robbins, Kevin Jensen
Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 132 (8) (2019)
Peng Qi, Douglas Eudy, Osler A Ortez, Jeremy Schmutz, Paul L Raymer, Katrien M Devos
High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome. Scientific reports 9 (1) (2019)
Babu Valliyodan, Steven B Cannon, Philipp E Bayer, Shengqiang Shu, Anne V Brown, Longhui Ren, Jerry Jenkins, Claire Y-L Chung, Ting-Fung Chan, Christopher G Daum, Christopher Plott, Alex Hastie, Kobi Baruch, Kerrie W Barry, Wei Huang, Gunvant Patil, Rajeev Kumar Varshney, Haifei Hu, Jacqueline Batley, Yuxuan Yuan, Qijian Song, Robert M Stupar, David M Goodstein, Gary Stacey, Hon-Ming Lam, Scott A Jackson, Jeremy Schmutz, Jane Grimwood, David Edwards, Henry T Nguyen
Construction and comparison of three reference-quality genome assemblies for soybean. The Plant journal : for cell and molecular biology 100 (5) (2019)
David John Bertioli, Jerry W Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Guillermo Seijo, Soraya C M Leal-Bertioli, Longhui Ren, Andrew D Farmer, Manish K Pandey, Sergio S Samoluk, Brian Abernathy, Gaurav Agarwal, Carolina Ballén-Taborda, Connor Cameron, Jacqueline D Campbell, Carolina Chavarro, Annapurna Chitikineni, Ye Chu, Sudhansu Dash, Moaine El Baidouri, Baozhu Guo, Wei Huang, Kyung Do Kim, Walid Korani, Sophie Lanciano, Christopher G Lui, Marie Mirouze, Márcio C Moretzsohn, Melanie Pham, Jin Hee Shin, Kenta Shirasawa, Senjuti Sinharoy, Avinash Sreedasyam, Nathan T Weeks, Xinyou Zhang, Zheng Zheng, Ziqi Sun, Lutz Froenicke, Erez L Aiden, Richard Michelmore, Rajeev Kumar Varshney, C Corley Holbrook, Ethalinda K S Cannon, Brian E Scheffler, Jane Grimwood, Peggy Ozias-Akins, Steven B Cannon, Scott A Jackson, Jeremy Schmutz
The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature genetics 51 (5) (2019)
Meng Xie, Wellington Muchero, Anthony C Bryan, Kelsey Yee, Hao-Bo Guo, Jin Zhang, Timothy J Tschaplinski, Vasanth R Singan, Erika A Lindquist, Raja S Payyavula, Jaime Barros-Rios, Richard A Dixon, Nancy L Engle, Robert W Sykes, Mark F Davis, Sara S Jawdy, Lee E Gunter, Olivia A Thompson, Stephen P DiFazio, Luke M Evans, Kim Winkeler, Cassandra M Collins, Jeremy Schmutz, Hong Guo, Udaya C Kalluri, Miguel Rodriguez, Kai Feng, Jin-Gui Chen, Gerald A Tuskan
A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus. The Plant cell 30 (7) (2018)
Xueming Yang, Hainan Zhao, Tao Zhang, Zixian Zeng, Pingdong Zhang, Bo Zhu, Yonghua Han, Guilherme T Braz, Michael D Casler, Jeremy Schmutz, Jiming Jiang
Amplification and adaptation of centromeric repeats in polyploid switchgrass species. The New phytologist 218 (4) (2018)
Marianne Emery, M Madeline S Willis, Yue Hao, Kerrie Barry, Khouanchy Oakgrove, Yi Peng, Jeremy Schmutz, Eric Lyons, J Chris Pires, Patrick P Edger, Gavin C Conant
Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. PLoS genetics 14 (3) (2018)

Jeremy Schmutz.css-eqlu8i{font-size:small;padding-left:4px;} (J Schmutz)

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Jeremy Schmutz (J Schmutz)