Joseph Bondy-Denomy

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 22

Top Venues

Nature communications

Nature microbiology

Journal of bacteriology

Nature methods

University of California San Francisco

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Francisco May 01 2015

United States

Assistant Professor :: Microbiology & Immunology

Publications

Daphne F Chen, Leah Tang Roe, Yuping Li, Adair L Borges, Jenny Y Zhang, Palak Babbar, Sourobh Maji, Maisie G V Stevens, Galen J Correy, Morgan E Diolati, Dominique H Smith, Alan Ashworth, Robert M Stroud, Mark J S Kelly, Joseph Bondy-Denomy, Brian K Shoichet
AcrIF11 is a potent CRISPR-specific ADP-ribosyltransferase encoded by phage and plasmid. bioRxiv : the preprint server for biology (2024)
Florian Tesson, Erin Huiting, Linlin Wei, Jie Ren, Matthew C Johnson, Rémi Planel, Jean Cury, Yue Feng, Joseph Bondy-Denomy, Aude Bernheim
Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements. bioRxiv : the preprint server for biology (2024)
Mark A Katz, Edith M Sawyer, Luke Oriolt, Albina Kozlova, Madison C Williams, Shally R Margolis, Matthew Johnson, Joseph Bondy-Denomy, Alexander J Meeske
Diverse viral cas genes antagonize CRISPR immunity. Nature (2024)
Eliza S Nieweglowska, Axel F Brilot, Melissa Mèndez-Moran, Claire Kokontis, Minkyung Baek, Junrui Li, Yifan Cheng, Julien S Baker, Joseph Bondy-Denomy, David A Agard
The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature communications 14 (1) (2023)
Eliza S Nieweglowska, Axel F Brilot, Melissa Mèndez-Moran, Claire Kokontis, Minkyung Baek, Junrui Li, Yifan Cheng, Julien S Baker, Joseph Bondy-Denomy, David A Agard
The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature communications 14 (1) (2023)
Polina Muzyukina, Anton Shkaruta, Noemi M Guzman, Jessica Andreani, Adair L Borges, Joseph Bondy-Denomy, Anna Maikova, Ekaterina Semenova, Konstantin Severinov, Olga Soutourina
Identification of an anti-CRISPR protein that inhibits the CRISPR-Cas type I-B system in Clostridioides difficile . mSphere (2023)
Eliza S Nieweglowska, Axel F Brilot, Melissa Mèndez-Moran, Claire Kokontis, Minkyung Baek, Junrui Li, Yifan Cheng, Julien S Baker, Joseph Bondy-Denomy, David A Agard
The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature communications 14 (1) (2023)
Andrea Fossati, Deepto Mozumdar, Claire Kokontis, Melissa Mèndez-Moran, Eliza S Nieweglowska, Adrian Pelin, Yuping Li, Baron Guo, Nevan J Krogan, David A Agard, Joseph Bondy-Denomy, Danielle L Swaney
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping. Nature communications 14 (1) (2023)
Senjuti Saha, Chidozie D Ojobor, Annie Si Cong Li, Erik Mackinnon, Olesia I North, Joseph Bondy-Denomy, Joseph S Lam, Alexander W Ensminger, Karen L Maxwell, Alan R Davidson
F-Type Pyocins Are Diverse Noncontractile Phage Tail-Like Weapons for Killing Pseudomonas aeruginosa . Journal of bacteriology (2023)
Eliza S Nieweglowska, Axel F Brilot, Melissa Mèndez-Moran, Claire Kokontis, Minkyung Baek, Junrui Li, Yifan Cheng, Julien S Baker, Joseph Bondy-Denomy, David A Agard
The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature communications 14 (1) (2023)
Indranil Arun Mukherjee, Clinton A Gabel, Nicholas Noinaj, Joseph Bondy-Denomy, Leifu Chang
Structural basis of AcrIF24 as an anti-CRISPR protein and transcriptional suppressor. Nature chemical biology 18 (12) (2022)
Jingwen Guan, Agnès Oromí-Bosch, Senén D Mendoza, Shweta Karambelkar, Joel D Berry, Joseph Bondy-Denomy
Bacteriophage genome engineering with CRISPR-Cas13a. Nature microbiology 7 (12) (2022)
Sutharsan Govindarajan, Adair Borges, Shweta Karambelkar, Joseph Bondy-Denomy
Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria. Journal of bacteriology 204 (5) (2022)
Joseph Bondy-Denomy
CRISPR inactivation by integration. Nature microbiology 6 (12) (2021)
Joseph Bondy-Denomy
Publisher Correction: CRISPR inactivation by integration. Nature microbiology (2021)
Caroline Mahendra, Kathleen A Christie, Beatriz A Osuna, Rafael Pinilla-Redondo, Benjamin P Kleinstiver, Joseph Bondy-Denomy
Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. Nature microbiology 5 (4) (2020)
Adair L Borges, Bardo Castro, Sutharsan Govindarajan, Tina Solvik, Veronica Escalante, Joseph Bondy-Denomy
Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity. Nature microbiology 5 (5) (2020)
Nicole D Marino, Rafael Pinilla-Redondo, Bálint Csörgő, Joseph Bondy-Denomy
Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies. Nature methods 17 (5) (2020)
Bálint Csörgő, Lina M León, Ilea J Chau-Ly, Alejandro Vasquez-Rifo, Joel D Berry, Caroline Mahendra, Emily D Crawford, Jennifer D Lewis, Joseph Bondy-Denomy
A compact Cascade-Cas3 system for targeted genome engineering. Nature methods 17 (12) (2020)
Rafael Pinilla-Redondo, Saadlee Shehreen, Nicole D Marino, Robert D Fagerlund, Warren P Tate, Søren Johannes Sørensen, Peter C Fineran, Joseph Bondy-Denomy
Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements. Nature communications 11 (1) (2020)
Jingwen Guan, Joseph Bondy-Denomy
Intracellular Organization by Jumbo Bacteriophages. Journal of bacteriology 203 (2) (2020)
Joseph Bondy-Denomy
Protein Inhibitors of CRISPR-Cas9. ACS chemical biology 13 (2) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Joseph Bondy-Denomy