Sam Abbott

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 20

Top Topics

Randomized Controlled Trial

Coronavirus Disease

Electronic Health Record

Top Venues

Wellcome open research

PLoS computational biology

Science (New York, N.Y.)

medRxiv : the preprint server for health sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Adrian Lison, Sam Abbott, Jana Sanne Huisman, Tanja Stadler
Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. PLoS computational biology 20 (4) (2024)
Katharine Sherrat, Anna C Carnegie, Adam Kucharski, Anne Cori, Carl A B Pearson, Christopher I Jarvis, Christopher Overton, Dale Weston, Edward M Hill, Edward Knock, Elizabeth Fearon, Emily S Nightingale, Joel Hellewell, W John Edmunds, Julián Villabona Arenas, Kiesha Prem, Li Pi, Marc Baguelin, Michelle Kendall, Neil Ferguson, Nicholas Davies, Rosalind M Eggo, Sabine L van Elsland, Timothy W Russell, Sebastian Funk, Yang Liu, Sam Abbott
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome open research 9 (2024)
Katharine Sherrat, Anna C Carnegie, Adam Kucharski, Anne Cori, Carl A B Pearson, Christopher I Jarvis, Christopher Overton, Dale Weston, Edward M Hill, Edward Knock, Elizabeth Fearon, Emily S Nightingale, Joel Hellewell, W John Edmunds, Julián Villabona Arenas, Kiesha Prem, Li Pi, Marc Baguelin, Michelle Kendall, Neil Ferguson, Nicholas Davies, Rosalind M Eggo, Sabine L van Elsland, Timothy W Russell, Sebastian Funk, Yang Liu, Sam Abbott
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome open research 9 (2024)
Adrian Lison, Sam Abbott, Jana Sanne Huisman, Tanja Stadler
Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. PLoS computational biology 20 (4) (2024)
Adrian Lison, Sam Abbott, Jana Sanne Huisman, Tanja Stadler
Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. PLoS computational biology 20 (4) (2024)
Adrian Lison, Sam Abbott, Jana Sanne Huisman, Tanja Stadler
Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. PLoS computational biology 20 (4) (2024)
Richard D Grieve, Youqi Yang, Sam Abbott, Giridhara R Babu, Malay Bhattacharyya, Natalie Dean, Stephen J W Evans, Nicholas Jewell, Sinéad M Langan, Woojoo Lee, Geert Molenberghs, Liam Smeeth, Elizabeth Williamson, Bhramar Mukherjee
The importance of investing in data, models, experiments, team science, and public trust to help policymakers prepare for the next pandemic. PLOS global public health 3 (11) (2023)
Timothy W Russell, Hermaleigh Townsley, Sam Abbott, Joel Hellewell, Edward J Carr, Nicholas G Davies, Rachael Pung, Billy J Quilty, David Hodgson, Ashley S Fowler, Lorin Adams, Christopher Bailey, Harriet V Mears, Ruth Harvey, Bobbi Clayton, Nicola O'Reilly, Yenting Ngai, Jérôme Nicod, Steven J Gamblin, Bryan Williams, Sonia Gandhi, Charles Swanton, Rupert C L Beale, David L V Bauer, Emma C Wall, Adam J Kucharski
Within-host SARS-CoV-2 viral kinetics informed by complex life course exposures reveals different intrinsic properties of Omicron and Delta variants. medRxiv : the preprint server for health sciences (2023)
Sam Abbott, Hannah Christensen, Ellen Brooks-Pollock
Reassessing the evidence for universal school-age BCG vaccination in England and Wales: re-evaluating and updating a modelling study. BMJ open 12 (1) (2022)
Akira Endo 遠藤彰, Hiroaki Murayama, Sam Abbott, Ruwan Ratnayake, Carl A B Pearson, W John Edmunds, Elizabeth Fearon, Sebastian Funk
Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022. Science (New York, N.Y.) 378 (6615) (2022)
Nicholas G Davies, Sam Abbott, Rosanna C Barnard, Christopher I Jarvis, Adam J Kucharski, James D Munday, Carl A B Pearson, Timothy W Russell, Damien C Tully, Alex D Washburne, Tom Wenseleers, Amy Gimma, William Waites, Kerry L M Wong, Kevin van Zandvoort, Justin D Silverman, null null, null null, Karla DiazOrdaz, Ruth H Keogh, Rosalind M M Eggo, Sebastian Funk, Mark Jit, Katherine E Atkins, W John Edmunds
Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.) 372 (6538) (2021)
Martin Pavelka, Kevin van Zandvoort, Sam Abbott, Katharine Sherrat, Marek Majdan, null null, null null, Pavol Jarčuška, Marek Krajčí, Stefan Flasche, Sebastian Funk
The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia. Science (New York, N.Y.) 372 (6542) (2021)
Sophie R Meakin, Sam Abbott, Nikos I Bosse, James D Munday, Hugo Gruson, Joel Hellewell, Katharine Sherrat, null null, Sebastian Funk
Comparative assessment of methods for short-term forecasts of COVID-19 admissions in England at the local level. medRxiv : the preprint server for health sciences (2021)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research 5 (2020)
Natsuko Imai, Katy A M Gaythorpe, Sam Abbott, Sangeeta N Bhatia, Sabine L van Elsland, Kiesha Prem, Yang Liu, Neil M Ferguson
Adoption and impact of non-pharmaceutical interventions for COVID-19. Wellcome open research 5 (2020)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research (2020)
Timothy W Russell, Nick Golding, Joel Hellewell, Sam Abbott, Lawrence Wright, Carl A B Pearson, Kevin van Zandvoort, Christopher I Jarvis, Hamish Gibbs, Yang Liu, Rosalind M M Eggo, W John Edmunds, Adam J Kucharski, null null
Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. BMC medicine 18 (1) (2020)
Thibaut Jombart, Kevin van Zandvoort, Timothy W Russell, Christopher I Jarvis, Amy Gimma, Sam Abbott, Sam Clifford, Sebastian Funk, Hamish Gibbs, Yang Liu, Carl A B Pearson, Nikos I Bosse, null null, Rosalind M Eggo, Adam J Kucharski, W John Edmunds
Inferring the number of COVID-19 cases from recently reported deaths. Wellcome open research 5 (2020)
Sam Abbott, Joel Hellewell, James D Munday, null null, Sebastian Funk
The transmissibility of novel Coronavirus in the early stages of the 2019-20 outbreak in Wuhan: Exploring initial point-source exposure sizes and durations using scenario analysis. Wellcome open research 5 (2020)
Akira Endo 遠藤彰, null null, Sam Abbott, Adam J Kucharski, Sebastian Funk
Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. Wellcome open research (2020)