Manuel Kleiner

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 48

Top Topics

Microbial Community

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

Plant molecular biology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella. PLoS pathogens 20 (6) (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Brianna L Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine Tenekjian, William S Yancy, Lawrence A David, Manuel Kleiner
Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans. bioRxiv : the preprint server for biology (2024)
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella. PLoS pathogens 20 (6) (2024)
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella. PLoS pathogens 20 (6) (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella. PLoS pathogens 20 (6) (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Brianna L Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine Tenekjian, William S Yancy, Lawrence A David, Manuel Kleiner
Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans. bioRxiv : the preprint server for biology (2024)
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella. PLoS pathogens 20 (6) (2024)
Ayesha Awan, Alexandria Bartlett, J Alfredo Blakeley-Ruiz, Tanner G Richie, Casey M Theriot, Manuel Kleiner
Dietary protein from different sources escapes host digestion and is differentially modified by the microbiota. bioRxiv : the preprint server for biology (2024)
Ayesha Awan, Alexandria Bartlett, J Alfredo Blakeley-Ruiz, Tanner G Richie, Casey M Theriot, Manuel Kleiner
Dietary protein from different sources escapes host digestion and is differentially modified by the microbiota. bioRxiv : the preprint server for biology (2024)
Brianna L Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine Tenekjian, William S Yancy, Lawrence A David, Manuel Kleiner
Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans. bioRxiv : the preprint server for biology (2024)
J Alfredo Blakeley-Ruiz, Alexandria Bartlett, Arthur S McMillan, Ayesha Awan, Molly Vanhoy Walsh, Alissa K Meyerhoffer, Simina Vintila, Jessie Maier, Tanner Richie, Casey M Theriot, Manuel Kleiner
Dietary protein source strongly alters gut microbiota composition and function. bioRxiv : the preprint server for biology (2024)
J Alfredo Blakeley-Ruiz, Alexandria Bartlett, Arthur S McMillan, Ayesha Awan, Molly Vanhoy Walsh, Alissa K Meyerhoffer, Simina Vintila, Jessie L Maier, Tanner G Richie, Casey M Theriot, Manuel Kleiner
Dietary protein source strongly alters gut microbiota composition and function. bioRxiv : the preprint server for biology (2024)
Brianna L Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine Tenekjian, William S Yancy, Lawrence A David, Manuel Kleiner
Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans. bioRxiv : the preprint server for biology (2024)
Ayesha Awan, Alexandria Bartlett, J Alfredo Blakeley-Ruiz, Tanner G Richie, Casey M Theriot, Manuel Kleiner
Dietary protein from different sources escapes host digestion and is differentially modified by the microbiota. bioRxiv : the preprint server for biology (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. Plant molecular biology 114 (2) (2024)
Dolma Michellod, Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Alexandra E Porter, Caroline Zeidler, Harald R Gruber-Vodicka, Nicole Dubilier, Manuel Liebeke
De novo phytosterol synthesis in animals. Science (New York, N.Y.) 380 (6644) (2023)
Eli D Hornstein, Melodi Charles, Megan Franklin, Brianne Edwards, Simina Vintila, Manuel Kleiner, Heike W Sederoff
Re-engineering a lost trait: IPD3 , a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. bioRxiv : the preprint server for biology (2023)
Dolma Michellod, Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Alexandra E Porter, Caroline Zeidler, Harald R Gruber-Vodicka, Nicole Dubilier, Manuel Liebeke
De novo phytosterol synthesis in animals. Science (New York, N.Y.) 380 (6644) (2023)
Dolma Michellod, Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Alexandra E Porter, Caroline Zeidler, Harald R Gruber-Vodicka, Nicole Dubilier, Manuel Liebeke
De novo phytosterol synthesis in animals. Science (New York, N.Y.) 380 (6644) (2023)
Dolma Michellod, Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Alexandra E Porter, Caroline Zeidler, Harald R Gruber-Vodicka, Nicole Dubilier, Manuel Liebeke
De novo phytosterol synthesis in animals. Science (New York, N.Y.) 380 (6644) (2023)
J Jacob Parnell, Simina Vintila, Clara Tang, Maggie R Wagner, Manuel Kleiner
Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization. Microbiology spectrum (2023)
Dolma Michellod, Tanja Bien, Daniel Birgel, Marlene Jensen, Manuel Kleiner, Alexandra E Porter, Caroline Zeidler, Harald R Gruber-Vodicka, Nicole Dubilier, Manuel Liebeke
De novo phytosterol synthesis in animals. Science (New York, N.Y.) 380 (6644) (2023)
Maggie R Wagner, Clara Tang, Fernanda Salvato, Kayla M Clouse, Alexandria Bartlett, Simina Vintila, Laura Phillips, Shannon Sermons, Mark Hoffmann, Peter J Balint-Kurti, Manuel Kleiner
Microbe-dependent heterosis in maize. Proceedings of the National Academy of Sciences of the United States of America 118 (30) (2021)
Marlene Jensen, Juliane Wippler, Manuel Kleiner
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses. Microbiology spectrum 9 (2) (2021)
Tjorven Hinzke, Manuel Kleiner, Mareike Meister, Rabea Schlüter, Christian Hentschker, Jan Pané-Farré, Petra Hildebrandt, Horst Felbeck, Stefan M Sievert, Florian Bonn, Uwe Völker, Dörte Becher, Thomas Schweder, Stephanie Markert
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis. eLife 10 (2021)
Angie Mordant, Manuel Kleiner
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes. Microbiology spectrum 9 (3) (2021)
Tim Van Den Bossche, Benoit Josef Kunath, Kay Schallert, Stephanie S Schäpe, Paul E Abraham, Jean Armengaud, Magnus Øverlie Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live Heldal Hagen, Rashi Halder, Céline Henry, Robert L Hettich, Robert Heyer, Pratik D Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin Von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature communications 12 (1) (2021)
Fernanda Salvato, Robert L Hettich, Manuel Kleiner
Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes. PLoS pathogens 17 (2) (2021)
Yui Sato, Juliane Wippler, Cecilia Wentrup, Tanja Woyke, Nicole Dubilier, Manuel Kleiner
High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology resource announcements 9 (31) (2020)
Manuel Kleiner, Brian Bushnell, Kenneth E Sanderson, Lora V Hooper, Breck A Duerkop
Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. Microbiome 8 (1) (2020)
Tjorven Hinzke, Manuel Kleiner, Corinna Breusing, Horst Felbeck, Robert Häsler, Stefan M Sievert, Rabea Schlüter, Philip C Rosenstiel, Thorsten B H Reusch, Thomas Schweder, Stephanie Markert
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis. mBio 10 (6) (2019)
Ruby Ponnudurai, Stefan E Heiden, Lizbeth Sayavedra, Tjorven Hinzke, Manuel Kleiner, Christian Hentschker, Horst Felbeck, Stefan M Sievert, Rabea Schlüter, Dörte Becher, Thomas Schweder, Stephanie Markert
Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions. The ISME journal 14 (2) (2019)
Manuel Kleiner
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities. mSystems 4 (3) (2019)
Oliver Jäckle, Brandon Kwee Boon Seah, Målin Tietjen, Nikolaus Leisch, Manuel Liebeke, Manuel Kleiner, Jasmine S Berg, Harald R Gruber-Vodicka
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. Proceedings of the National Academy of Sciences of the United States of America 116 (17) (2019)
Adrien Assié, Nikolaus Leisch, Dimitri V Meier, Harald R Gruber-Vodicka, Halina E Tegetmeyer, Anke Meyerdierks, Manuel Kleiner, Tjorven Hinzke, Samantha B Joye, Matthew Saxton, Nicole Dubilier, Jillian M Petersen
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). The ISME journal 14 (1) (2019)
Maxim Rubin-Blum, Nicole Dubilier, Manuel Kleiner
Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria. mSphere 4 (1) (2019)
Brandon Kwee Boon Seah, Chakkiath Paul Antony, Bruno Huettel, Jan Zarzycki, Lennart Schada von Borzyskowski, Tobias J Erb, Angela Kouris, Manuel Kleiner, Manuel Liebeke, Nicole Dubilier, Harald R Gruber-Vodicka
Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation. mBio 10 (3) (2019)
Manuel Kleiner, Xiaoli Dong, Tjorven Hinzke, Juliane Wippler, Erin Thorson, Bernhard Mayer, Marc Strous
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. Proceedings of the National Academy of Sciences of the United States of America 115 (24) (2018)
Breck A Duerkop, Manuel Kleiner, A David Páez-Espino, Wenhan Zhu, Brian Bushnell, Brian Hassell, Sebastian E Winter, Nikos C Kyrpides, Lora V Hooper
Murine colitis reveals a disease-associated bacteriophage community. Nature microbiology 3 (9) (2018)
Manuel Kleiner, Erin Thorson, Christine E Sharp, Xiaoli Dong, Dan Liu, Carmen Li, Marc Strous
Assessing species biomass contributions in microbial communities via metaproteomics. Nature communications 8 (1) (2017)
Maxim Rubin-Blum, Chakkiath Paul Antony, Christian Borowski, Lizbeth Sayavedra, Thomas Pape, Heiko Sahling, Gerhard Bohrmann, Manuel Kleiner, Molly C Redmond, David L Valentine, Nicole Dubilier
Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. Nature microbiology 2 (2017)
Ruby Ponnudurai, Manuel Kleiner, Lizbeth Sayavedra, Jillian M Petersen, Martin Moche, Andreas Otto, Dörte Becher, Takeshi Takeuchi, Noriyuki Satoh, Nicole Dubilier, Thomas Schweder, Stephanie Markert
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. The ISME journal 11 (2) (2016)
Jillian M Petersen, Anna Kemper, Harald Gruber-Vodicka, Ulisse Cardini, Matthijs van der Geest, Manuel Kleiner, Silvia Bulgheresi, Marc Mußmann, Craig Herbold, Brandon Kwee Boon Seah, Chakkiath Paul Antony, Dan Liu, Alexandra Belitz, Miriam Weber
Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nature microbiology 2 (2016)