Timothy J Griffin (Tim J Griffin, Timothy Griffin)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 30

Top Topics

Mass Spectrometry

Irritable Bowel Syndrome

Gas Chromatography

Top Venues

Journal of proteome research

Chemical research in toxicology

This page only lists publications with an associated author ORCID identifier.

Publications

Monica E Kruk, Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E Johnson, Reid Wagner, Chris H Wendt, John B O'Connor, J Kirk Harris, Theresa A Laguna, Pratik D Jagtap, Timothy J Griffin
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems (2024)
Monica E Kruk, Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E Johnson, Reid Wagner, Chris H Wendt, John B O'Connor, J Kirk Harris, Theresa A Laguna, Pratik D Jagtap, Timothy J Griffin
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems 9 (7) (2024)
Monica E Kruk, Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E Johnson, Reid Wagner, Chris H Wendt, John B O'Connor, J Kirk Harris, Theresa A Laguna, Pratik D Jagtap, Timothy J Griffin
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems (2024)
Monica E Kruk, Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E Johnson, Reid Wagner, Chris H Wendt, John B O'Connor, J Kirk Harris, Theresa A Laguna, Pratik D Jagtap, Timothy J Griffin
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems 9 (7) (2024)
Monica E Kruk, Subina Mehta, Kevin Murray, LeeAnn Higgins, Katherine Do, James E Johnson, Reid Wagner, Chris H Wendt, John B O'Connor, J Kirk Harris, Theresa A Laguna, Pratik D Jagtap, Timothy J Griffin
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease. mSystems 9 (7) (2024)
Kevin J Murray, Peter W Villalta, Timothy J Griffin, Silvia Balbo
Discovery of Modified Metabolites, Secondary Metabolites, and Xenobiotics by Structure-Oriented LC-MS/MS. Chemical research in toxicology (2023)
Li Li, Brian E Vestal, Margaret M Mroz, Sucai Liu, Kristyn MacPhail, Timothy J Griffin, Ivana V Yang, Lisa A Maier, Maneesh Bhargava
Compartment-specific protein interactions in beryllium lung disease. ERJ open research 9 (6) (2023)
Sarah Samorodnitsky, Eric F Lock, Monica Kruk, Alison Morris, Janice M Leung, Ken M Kunisaki, Timothy J Griffin, Chris H Wendt
Lung proteome and metabolome endotype in HIV-associated obstructive lung disease. ERJ open research 9 (2) (2023)
Andrew T Rajczewski, Lorena Ndreu, Efstathios Vryonidis, Alexander K Hurben, Sara Jamshidi, Timothy J Griffin, Margareta Å Törnqvist, Natalia Y Tretyakova, Isabella Karlsson
Mass Spectrometry-Based Strategies for Assessing Human Exposure Using Hemoglobin Adductomics. Chemical research in toxicology (2023)
Sarah Samorodnitsky, Eric F Lock, Monica Kruk, Alison Morris, Janice M Leung, Ken M Kunisaki, Timothy J Griffin, Chris H Wendt
Lung proteome and metabolome endotype in HIV-associated obstructive lung disease. ERJ open research 9 (2) (2023)
Surbhi Bihani, Aryan Gupta, Subina Mehta, Andrew T Rajczewski, James Johnson, Dhanush Borishetty, Timothy J Griffin, Sanjeeva Srivastava, Pratik D Jagtap
Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients. Journal of proteome research (2023)
Subina Mehta, Valdemir M Carvalho, Andrew T Rajczewski, Olivier Pible, Björn A Grüning, James E Johnson, Reid Wagner, Jean Armengaud, Timothy J Griffin, Pratik D Jagtap
Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations. Viruses 14 (10) (2022)
Adam L Edwinson, Lu Yang, Stephanie Peters, Nikita Hanning, Patricio Jeraldo, Pratik D Jagtap, Joshua B Simpson, Tzu-Yi Yang, Praveen Kumar, Subina Mehta, Asha Nair, Margaret Breen-Lyles, Lakshmikanth Chikkamenahalli, Rondell P Graham, Benedicte Y De Winter, Robin Patel, Surendra Dasari, Purna C Kashyap, Timothy J Griffin, Jun Chen, Gianrico Farrugia, Matthew R Redinbo, Madhusudan Grover
Gut microbial β-glucuronidases regulate host luminal proteases and are depleted in irritable bowel syndrome. Nature microbiology 7 (5) (2022)
Anna-Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J O Baker, Ammar Ben Hadj Amor, Salvador Capella, Paulos Charonyktakis, Michael R Crusoe, Yolanda Gil, Carole Goble, Timothy J Griffin, Paul Groth, Hans Ienasescu, Pratik D Jagtap, Matúš Kalaš, Vedran Kasalica, Ali Reza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szoke Szaniszlo, Suzan Verberne, Aswin Verhoeven, Katherine J Wolstencroft
Perspectives on automated composition of workflows in the life sciences. F1000Research 10 (2021)
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit Josef Kunath, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E Johnson, Timothy J Griffin, Pratik D Jagtap
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research 10 (2021)
Subina Mehta, Praveen Kumar, Marie Crane, James E Johnson, Ray Sajulga, Dinh Duy An Nguyen, Thomas McGowan, Magnus Ø Arntzen, Timothy J Griffin, Pratik D Jagtap
Updates on metaQuantome Software for Quantitative Metaproteomics. Journal of proteome research 20 (4) (2021)
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit Josef Kunath, Phillip B Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E Johnson, Timothy J Griffin, Pratik D Jagtap
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research 10 (2021)
Peter S Thuy-Boun, Subina Mehta, Bjoern Andreas Gruening, Thomas McGowan, An Nguyen, Andrew T Rajczewski, James E Johnson, Timothy J Griffin, Dennis W Wolan, Pratik D Jagtap
Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms. Journal of proteome research 20 (2) (2021)
Tim Van Den Bossche, Benoit Josef Kunath, Kay Schallert, Stephanie S Schäpe, Paul E Abraham, Jean Armengaud, Magnus Øverlie Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live Heldal Hagen, Rashi Halder, Céline Henry, Robert L Hettich, Robert Heyer, Pratik D Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin Von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature communications 12 (1) (2021)
Andrew T Rajczewski, Lorena Ndreu, Suresh S Pujari, Timothy J Griffin, Margareta Å Törnqvist, Isabella Karlsson, Natalia Y Tretyakova
Novel 4-Hydroxybenzyl Adducts in Human Hemoglobin: Structures and Mechanisms of Formation. Chemical research in toxicology 34 (7) (2021)
Subina Mehta, Caleb W Easterly, Ray Sajulga, Robert J Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R Shortreed, Lloyd M Smith, Thomas McGowan, Praveen Kumar, James E Johnson, Timothy J Griffin, Pratik D Jagtap
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform. Proteomes 8 (3) (2020)
Praveen Kumar, James E Johnson, Caleb W Easterly, Subina Mehta, Ray Sajulga, Brook L Nunn, Pratik D Jagtap, Timothy J Griffin
A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases. Journal of proteome research 19 (7) (2020)
Shane L Hubler, Praveen Kumar, Subina Mehta, Caleb W Easterly, James E Johnson, Pratik D Jagtap, Timothy J Griffin
Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits. Journal of proteome research 19 (1) (2019)
Pratik D Jagtap, Kevin J Viken, James Johnson, Thomas McGowan, Kathryn M Pendleton, Timothy J Griffin, Ryan C Hunter, Joel D Rudney, Maneesh Bhargava
BAL Fluid Metaproteome in Acute Respiratory Failure. American journal of respiratory cell and molecular biology 59 (5) (2019)
Praveen Kumar, Priyabrata Panigrahi, James Johnson, Wanda J Weber, Subina Mehta, Ray Sajulga, Caleb Easterly, Brian A Crooker, Mohammad Heydarian, Krishanpal Anamika, Timothy J Griffin, Pratik D Jagtap
QuanTP: A Software Resource for Quantitative Proteo-Transcriptomic Comparative Data Analysis and Informatics. Journal of proteome research 18 (2) (2019)
Andrea Argentini, An Staes, Bjoern Andreas Gruening, Subina Mehta, Caleb W Easterly, Timothy J Griffin, Pratik D Jagtap, Francis Impens, Lennart Martens
Update on the moFF Algorithm for Label-Free Quantitative Proteomics. Journal of proteome research 18 (2) (2018)
James E Johnson, Praveen Kumar, Caleb W Easterly, Mark Esler, Subina Mehta, Arthur C Eschenlauer, Adrian D Hegeman, Pratik D Jagtap, Timothy J Griffin
Improve your Galaxy text life: The Query Tabular Tool. F1000Research (2018)
Clemens Blank, Caleb Easterly, Bjoern Gruening, James Johnson, Carolin A Kolmeder, Praveen Kumar, Damon May, Subina Mehta, Bart Mesuere, Zachary Brown, Joshua E Elias, William Judson Hervey, Thomas McGowan, Thilo Muth, Brook L Nunn, Joel Rudney, Alessandro Tanca, Timothy J Griffin, Pratik D Jagtap
Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework. Proteomes 6 (1) (2018)
Ray Sajulga, Subina Mehta, Praveen Kumar, James E Johnson, Candace R Guerrero, Michael C Ryan, Rachel Karchin, Pratik D Jagtap, Timothy J Griffin
Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics. Journal of proteome research 17 (12) (2018)
James E Johnson, Praveen Kumar, Caleb W Easterly, Mark Esler, Subina Mehta, Arthur C Eschenlauer, Adrian D Hegeman, Pratik D Jagtap, Timothy J Griffin
Improve your Galaxy text life: The Query Tabular Tool. F1000Research 7 (2018)