Tim Van Den Bossche

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 22

Top Venues

Journal of proteome research

Journal of the American Society for Mass Spectrometry

Nature communications

NAR genomics and bioinformatics

VIB - UGent Center for Medical Biotechnology

Universiteit Gent (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

VIB - UGent Center for Medical Biotechnology Oct 01 2016

Belgium

SB PhD student at FWO

Education History

Universiteit Gent

Belgium

MSC

Universiteit Gent

Belgium

BSC

Universiteit Gent Oct 01 2016

Belgium

PHD

Publications

Chris Bielow, Nils Hoffmann, David Jimenez-Morales, Tim Van Den Bossche, Juan Antonio Vizcaino, David L Tabb, Wout Bittremieux, Mathias Walzer
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java. Journal of the American Society for Mass Spectrometry 35 (8) (2024)
Tim Van Den Bossche, Pieter Verschaffelt, Tibo Vande Moortele, Peter Dawyndt, Lennart Martens, Bart Mesuere
Biodiversity Analysis of Metaproteomics Samples with Unipept: A Comprehensive Tutorial. Methods in molecular biology (Clifton, N.J.) 2836 (2024)
Chris Bielow, Nils Hoffmann, David Jimenez-Morales, Tim Van Den Bossche, Juan Antonio Vizcaino, David L Tabb, Wout Bittremieux, Mathias Walzer
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java. Journal of the American Society for Mass Spectrometry (2024)
Chris Bielow, Nils Hoffmann, David Jimenez-Morales, Tim Van Den Bossche, Juan Antonio Vizcaino, David L Tabb, Wout Bittremieux, Mathias Walzer
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java. Journal of the American Society for Mass Spectrometry 35 (8) (2024)
Chris Bielow, Nils Hoffmann, David Jimenez-Morales, Tim Van Den Bossche, Juan Antonio Vizcaino, David L Tabb, Wout Bittremieux, Mathias Walzer
Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java. Journal of the American Society for Mass Spectrometry 35 (8) (2024)
Tine Claeys, Tim Van Den Bossche, Yasset Perez Riverol, Kris Gevaert, Juan Antonio Vizcaino, Lennart Martens
lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation. Nature communications 14 (1) (2023)
Pieter Verschaffelt, Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche, Tibo Vande Moortele, Peter Dawyndt, Lennart Martens, Bart Mesuere
Unipept Desktop 2.0: Construction of Targeted Reference Protein Databases for Metaproteogenomics Analyses. Journal of proteome research (2023)
Genet Abay Shiferaw, Ralf Gabriels, Robbin Bouwmeester, Tim Van Den Bossche, Elien Vandermarliere, Lennart Martens, Pieter-Jan Volders
Sensitive and Specific Spectral Library Searching with CompOmics Spectral Library Searching Tool and Percolator. Journal of proteome research 21 (5) (2022)
Kay Schallert, Pieter Verschaffelt, Bart Mesuere, Dirk Benndorf, Lennart Martens, Tim Van Den Bossche
Pout2Prot : An Efficient Tool to Create Protein (Sub)groups from Percolator Output Files. Journal of proteome research 21 (4) (2022)
Richard D LeDuc, Eric W Deutsch, Pierre-Alain Binz, Ryan T Fellers, Anthony J Cesnik, Joshua A Klein, Tim Van Den Bossche, Ralf Gabriels, Arshika Yalavarthi, Yasset Perez Riverol, Jeremy Carver, Wout Bittremieux, Shin Kawano, Benjamin Pullman, Nuno Bandeira, Michael P Snyder, Paul M Thomas, Juan Antonio Vizcaino
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. Journal of proteome research 21 (4) (2022)
Pieter Verschaffelt, Tim Van Den Bossche, Lennart Martens, Peter Dawyndt, Bart Mesuere
Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool. Journal of proteome research 20 (4) (2021)
Eric W Deutsch, Yasset Perez Riverol, Jeremy Carver, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, Jim Shofstahl, Wout Bittremieux, Tytus D Mak, Joshua Klein, Yunping Zhu, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira
Universal Spectrum Identifier for mass spectra. Nature methods 18 (7) (2021)
Bart Van Puyvelde, Katleen Van Uytfanghe, Olivier Tytgat, Laurence Van Oudenhove, Ralf Gabriels, Robbin Bouwmeester, Simon Daled, Tim Van Den Bossche, Pathmanaban Ramasamy, Sigrid Verhelst, Laura De Clerck, Laura Corveleyn, Sander Willems, Nathan Debunne, Evelien Wynendaele, Bart De Spiegeleer, Peter Judak, Kris Roels, Laurie De Wilde, Peter Van Eenoo, Tim Reyns, Marc Cherlet, Emmie Dumont, Griet Debyser, Ruben t'Kindt, Koen Sandra, Surya Gupta, Nicolas Drouin, Amy Harms, Thomas Hankemeier, Donald J L Jones, Pankaj Gupta, Dan Lane, Catherine S Lane, Said El Ouadi, Jean-Baptiste Vincendet, Nick Morrice, Stuart Oehrle, Nikunj Tanna, Steve Silvester, Sally Hannam, Florian C Sigloch, Andrea Bhangu-Uhlmann, Jan Claereboudt, N Leigh Anderson, Morteza Razavi, Sven Degroeve, Lize Cuypers, Christophe Pol Stove, Katrien Lagrou, Geert A Martens, Dieter Deforce, Lennart Martens, Johannes P C Vissers, Maarten Dhaenens
Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients. JACS Au 1 (6) (2021)
Pieter Verschaffelt, Tim Van Den Bossche, Wassim Gabriel, Burdukiewicz Michał, Alessio Soggiu, Lennart Martens, Bernhard Y Renard, Henning Schiebenhoefer, Bart Mesuere
MegaGO: A Fast Yet Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets. Journal of proteome research 20 (4) (2021)
Lorenzo Canti, Anna Chrzanowska, M Giulia Doglio, Lia Martina, Tim Van Den Bossche
Research culture: science from bench to society. Biology open 10 (8) (2021)
Tim Van Den Bossche, Benoit Josef Kunath, Kay Schallert, Stephanie S Schäpe, Paul E Abraham, Jean Armengaud, Magnus Øverlie Arntzen, Ariane Bassignani, Dirk Benndorf, Stephan Fuchs, Richard J Giannone, Timothy J Griffin, Live Heldal Hagen, Rashi Halder, Céline Henry, Robert L Hettich, Robert Heyer, Pratik D Jagtap, Nico Jehmlich, Marlene Jensen, Catherine Juste, Manuel Kleiner, Olivier Langella, Theresa Lehmann, Emma Leith, Patrick May, Bart Mesuere, Guylaine Miotello, Samantha L Peters, Olivier Pible, Pedro T Queiros, Udo Reichl, Bernhard Y Renard, Henning Schiebenhoefer, Alexander Sczyrba, Alessandro Tanca, Kathrin Trappe, Jean-Pierre Trezzi, Sergio Uzzau, Pieter Verschaffelt, Martin Von Bergen, Paul Wilmes, Maximilian Wolf, Lennart Martens, Thilo Muth
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nature communications 12 (1) (2021)
Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Bjoern Andreas Gruening, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W Deutsch, Juan Antonio Vizcaino, Mingze Bai, Timo Sachsenberg, Lev I Levitsky, Yasset Perez Riverol
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications 12 (1) (2021)
Tim Van Den Bossche, Magnus Øverlie Arntzen, Dörte Becher, Dirk Benndorf, Vincent G H Eijsink, Céline Henry, Pratik D Jagtap, Nico Jehmlich, Catherine Juste, Benoit Josef Kunath, Bart Mesuere, Thilo Muth, Phillip Byron Pope, Jana Seifert, Alessandro Tanca, Sergio Uzzau, Paul Wilmes, Robert L Hettich, Jean Armengaud
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome 9 (1) (2021)
Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard-Paulet, Yasset Perez Riverol, Veit Schwämmle, Julian Uszkoreit, Tim Van Den Bossche
The European Bioinformatics Community for Mass Spectrometry (EuBIC-MS): an open community for bioinformatics training and research. Rapid communications in mass spectrometry : RCM (2021)
Tim Van Den Bossche, Pieter Verschaffelt, Kay Schallert, Harald Barsnes, Peter Dawyndt, Dirk Benndorf, Bernhard Y Renard, Bart Mesuere, Lennart Martens, Thilo Muth
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis. Journal of proteome research 19 (8) (2020)
Maria Muñoz-Benavent, Felix Hartkopf, Tim Van Den Bossche, Vitor C Piro, Carlos García-Ferris, Amparo Latorre, Bernhard Y Renard, Thilo Muth
gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms. NAR genomics and bioinformatics 2 (3) (2020)
Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert, Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, Sean L Seymour, Luis Francisco Hernández Sánchez, Gerhard Mayer, Martin Eisenacher, Yasset Perez-Riverol, Eugene A Kapp, Luis Mendoza, Peter R Baker, Andrew Collins, Tim Van Den Bossche, Eric W Deutsch
Proteomics Standards Initiative Extended FASTA Format. Journal of proteome research 18 (6) (2019)

Tim Van Den Bossche.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Tim Van Den Bossche