Axel Visel

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 69

Top Topics

Transcription Factor

Dna Methylation

Top Venues

Nature communications

Nature genetics

Communications biology

This page only lists publications with an associated author ORCID identifier.

Publications

Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants (2024)
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E Cook, Fabrice Darbellay, Cailyn H Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven N Lisgo, Bing Ren, Diane E Dickel, Len A Pennacchio, Axel Visel
Dynamic enhancer landscapes in human craniofacial development. Nature communications 15 (1) (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants 10 (4) (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants 10 (4) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E Cook, Fabrice Darbellay, Cailyn H Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven N Lisgo, Bing Ren, Diane E Dickel, Len A Pennacchio, Axel Visel
Dynamic enhancer landscapes in human craniofacial development. Nature communications 15 (1) (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants 10 (4) (2024)
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E Cook, Fabrice Darbellay, Cailyn H Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven N Lisgo, Bing Ren, Diane E Dickel, Len A Pennacchio, Axel Visel
Dynamic enhancer landscapes in human craniofacial development. Nature communications 15 (1) (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants 10 (4) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Michael Kosicki, Boyang Zhang, Anusri Pampari, Jennifer A Akiyama, Ingrid Playzer-Frick, Catherine S Novak, Stella Tran, Yiwen Zhu, Momoe Kato, Riana D Hunter, Kianna von Maydell, Sarah Barton, Erik Beckman, Anshul Kundaje, Diane E Dickel, Axel Visel, Len A Pennacchio
Mutagenesis Sensitivity Mapping of Human Enhancers In Vivo. bioRxiv : the preprint server for biology (2024)
Karen Serrano, Margaret Bezrutczyk, Danielle Goudeau, Thai Dao, Ronan C O'Malley, Rex R Malmstrom, Axel Visel, Henrik Vibe Scheller, Benjamin J Cole
Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature plants 10 (4) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E Cook, Fabrice Darbellay, Cailyn H Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven N Lisgo, Bing Ren, Diane E Dickel, Len A Pennacchio, Axel Visel
Dynamic enhancer landscapes in human craniofacial development. Nature communications 15 (1) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Zhuoxin Chen, Valentina Snetkova, Grace Bower, Sandra Jacinto, Benjamin Clock, Atrin Dizehchi, Iros Barozzi, Brandon J Mannion, Ana Alcaina Caro, Javier Lopez-Rios, Diane E Dickel, Axel Visel, Len A Pennacchio, Evgeny Z Kvon
Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nature genetics 56 (4) (2024)
Fabrice Darbellay, Anna Ramisch, Lucille Lopez-Delisle, Michael Kosicki, Antonella Rauseo, Zahra Jouini, Axel Visel, Guillaume Andrey
Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development. Nature communications 15 (1) (2024)
Georgios A Pavlopoulos, Fotis A Baltoumas, Sirui Liu, Oguz Selvitopi, Antonio Pedro Camargo, Stephen Nayfach, Ariful Azad, Simon Roux, Lee Call, Natalia N Ivanova, I Min Chen, A David Páez-Espino, Evangelos Karatzas, null null, Ioannis Iliopoulos, Konstantinos T Konstantinidis, James M Tiedje, Jennifer Pett-Ridge, Julien S Baker, Axel Visel, Christos A Ouzounis, Sergey Ovchinnikov, Aydın Buluç, Nikos C Kyrpides
Unraveling the functional dark matter through global metagenomics. Nature (2023)
Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E Cook, Fabrice Darbellay, Cailyn H Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven Lisgo, Bing Ren, Diane E Dickel, Len A Pennacchio, Axel Visel
Cell Type- and Tissue-specific Enhancers in Craniofacial Development. bioRxiv : the preprint server for biology (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Cassie L Kemmler, Jana Smolikova, Hannah R Moran, Brandon J Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E Fitch, Seraina Bötschi, Licia Selleri, Emma Kirsten Farley, Ingo Braasch, Maximina Hee Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger
Conserved enhancer logic controls the notochord expression of vertebrate Brachyury . bioRxiv : the preprint server for biology (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Jay Devine, Marta Vidal-García, Wei Liu, Amanda Neves, Lucas D Lo Vercio, Rebecca M Green, Heather A Richbourg, Marta Marchini, Colton M Unger, Audrey C Nickle, Bethany Radford, Nathan M Young, Paula N Gonzalez, Robert E Schuler, Alejandro Bugacov, Campbell Rolian, Christopher J Percival, Trevor Williams, Lee Niswander, Anne L Calof, Arthur D Lander, Axel Visel, Frank R Jirik, James M Cheverud, Ophir D Klein, Ramon Y Birnbaum, Amy E Merrill, Rebecca R Ackermann, Daniel Graf, Myriam Hemberger, Wendy Dean, Nils Daniel Forkert, Stephen A Murray, Henrik Westerberg, Ralph S Marcucio, Benedikt Hallgrimsson
Author Correction: MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Scientific data 10 (1) (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Ferdinand Marletaz, Elisa de la Calle-Mustienes, Rafael D Acemel, Christina Paliou, Silvia Naranjo, Pedro Manuel Martínez-García, Ildefonso Cases, Victoria A Sleight, Christine Hirschberger, Marina Marcet-Houben, Dina Navon, Ali Andrescavage, Ksenia Skvortsova, Paul Edward Duckett, Álvaro González-Rajal, Ozren Bogdanovic, Johan H Gibcus, Liyan Yang, Lourdes Gallardo-Fuentes, Ismael Sospedra, Javier Lopez-Rios, Fabrice Darbellay, Axel Visel, Job Dekker, Neil Shubin, Toni Gabaldon, Tetsuya Nakamura, Juan Jesús Tena, Darío G Lupiáñez, Daniel S Rokhsar, José Luis Gómez-Skarmeta
The little skate genome and the evolutionary emergence of wing-like fins. Nature (2023)
Marta Losa, Iros Barozzi, Marco Osterwalder, Viviana Hermosilla Aguayo, Angela Morabito, Brandon H Chacón, Peyman Zarrineh, Ausra Girdziusaite, Jean Denis Benazet, Jianjian Zhu, Susan Mackem, Terence Dante Capellini, Diane E Dickel, Nicoletta Bobola, Aimée Zuniga, Axel Visel, Rolf Zeller, Licia Selleri
A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2. Nature communications 14 (1) (2023)
Cassie L Kemmler, Jana Smolikova, Hannah R Moran, Brandon J Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E Fitch, Seraina Bötschi, Licia Selleri, Emma Kirsten Farley, Ingo Braasch, Maximina Hee Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger
Conserved enhancer logic controls the notochord expression of vertebrate Brachyury . bioRxiv : the preprint server for biology (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Jay Devine, Marta Vidal-García, Wei Liu, Amanda Neves, Lucas D Lo Vercio, Rebecca M Green, Heather A Richbourg, Marta Marchini, Colton M Unger, Audrey C Nickle, Bethany Radford, Nathan M Young, Paula N Gonzalez, Robert E Schuler, Alejandro Bugacov, Campbell Rolian, Christopher J Percival, Trevor Williams, Lee Niswander, Anne L Calof, Arthur D Lander, Axel Visel, Frank R Jirik, James M Cheverud, Ophir D Klein, Ramon Y Birnbaum, Amy E Merrill, Rebecca R Ackermann, Daniel Graf, Myriam Hemberger, Wendy Dean, Nils Daniel Forkert, Stephen A Murray, Henrik Westerberg, Ralph S Marcucio, Benedikt Hallgrimsson
Author Correction: MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Scientific data 10 (1) (2023)
Cassie L Kemmler, Jana Smolikova, Hannah R Moran, Brandon J Mannion, Dunja Knapp, Fabian Lim, Anna Czarkwiani, Viviana Hermosilla Aguayo, Vincent Rapp, Olivia E Fitch, Seraina Bötschi, Licia Selleri, Emma Kirsten Farley, Ingo Braasch, Maximina Hee Yun, Axel Visel, Marco Osterwalder, Christian Mosimann, Zbynek Kozmik, Alexa Burger
Conserved enhancers control notochord expression of vertebrate Brachyury. Nature communications 14 (1) (2023)
Sudha Sunil Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza, Matthew J Blow, Quan Pham, Anne N Harrington, Janeth Godoy, Eman M Meky, Kianna von Maydell, Riana D Hunter, Jennifer A Akiyama, Catherine S Novak, Ingrid Plajzer-Frick, Veena Afzal, Stella Tran, Javier Lopez-Rios, Michael E Talkowski, Kevin C Kent Lloyd, Bing Ren, Diane E Dickel, Axel Visel, Len A Pennacchio
Topologically associating domain boundaries are required for normal genome function. Communications biology 6 (1) (2023)
Xingfan Huang, Jana Henck, Chengxiang Qiu, Varun K A Sreenivasan, Saranya Balachandran, Oana Veronica Amarie, Martin Hrabě de Angelis, Rose Yinghan Behncke, Wing-Lee Chan, Alexandra Despang, Diane E Dickel, Madeleine Duran, Annette Feuchtinger, Helmut Fuchs, Valérie Gailus-Durner, Natja Haag, Rene Hägerling, Nils Rouven Hansmeier, Friederike Hennig, Cooper Marshall, Sudha Sunil Rajderkar, Alessa Ringel, Michael I Robson, Lauren M Saunders, Patricia da Silva-Buttkus, Nadine Spielmann, Sanjay R Srivatsan, Sascha Ulferts, Lars Wittler, Yiwen Zhu, Vera M Kalscheuer, Daniel M Ibrahim, Ingo Kurth, Uwe Kornak, Axel Visel, Len A Pennacchio, David R Beier, Cole Trapnell, Junyue Cao, Jay Shendure, Malte Spielmann
Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Nature (2023)
Jay Devine, Marta Vidal-García, Wei Liu, Amanda Neves, Lucas D Lo Vercio, Rebecca M Green, Heather A Richbourg, Marta Marchini, Colton M Unger, Audrey C Nickle, Bethany Radford, Nathan M Young, Paula N Gonzalez, Robert E Schuler, Alejandro Bugacov, Campbell Rolian, Christopher J Percival, Trevor Williams, Lee Niswander, Anne L Calof, Arthur D Lander, Axel Visel, Frank R Jirik, James M Cheverud, Ophir D Klein, Ramon Y Birnbaum, Amy E Merrill, Rebecca R Ackermann, Daniel Graf, Myriam Hemberger, Wendy Dean, Nils Daniel Forkert, Stephen A Murray, Henrik Westerberg, Ralph S Marcucio, Benedikt Hallgrimsson
MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses. Scientific data 9 (1) (2022)
Connor Yanchus, Kristen L Drucker, Thomas M Kollmeyer, Ricky Tsai, Warren Winick-Ng, Minggao Liang, Ahmad Malik, Judy Pawling, Silvana B De Lorenzo, Asma Ali, Paul A Decker, Matt L Kosel, Arijit Panda, Khalid N Al-Zahrani, Lingyan Jiang, Jared W L Browning, Chris Lowden, Michael Geuenich, J Javier Hernandez, Jessica T Gosio, Musaddeque Ahmed, Sampath Kumar Loganathan, Jacob Berman, Daniel Trcka, Kulandaimanuvel Antony Michealraj, Jerome Fortin, Brittany Carson, Ethan W Hollingsworth, Sandra Jacinto, Parisa Mazrooei, Lily Zhou, Andrew J Elia, Mathieu Lupien, Housheng Hansen He, Daniel J Murphy, Liguo Wang, Alexej Abyzov, James W Dennis, Philipp G Maass, Kieran Campbell, Michael D Wilson, Daniel H Lachance, Margaret Wrensch, John Wiencke, Tak Wah Mak, Len A Pennacchio, Diane E Dickel, Axel Visel, Jeffrey L Wrana, Michael D Taylor, Gelareh Zadeh, Peter B Dirks, Jeanette E Eckel-Passow, Liliana Attisano, Ana Pombo, Cristiane M Ida, Evgeny Z Kvon, Robert B Jenkins, Daniel Schramek
A noncoding single-nucleotide polymorphism at 8q24 drives IDH1 -mutant glioma formation. Science (New York, N.Y.) 378 (6615) (2022)
Shiri Kult, Tsviya Olender, Marco Osterwalder, Svetalana Markman, Dena Leshkowitz, Sharon Krief, Ronnie Blecher-Gonen, Shani Ben-Moshe, Lydia Farack, Hadas Keren-Shaul, Tomer-Meir Salame, Terence Dante Capellini, Shalev Itzkovitz, Ido Amit, Axel Visel, Elazar Zelzer
Bi-fated tendon-to-bone attachment cells are regulated by shared enhancers and KLF transcription factors. eLife 10 (2021)
Valentina Snetkova, Len A Pennacchio, Axel Visel, Diane E Dickel
Perfect and imperfect views of ultraconserved sequences. Nature reviews. Genetics (2021)
Valentina Snetkova, Athena R Ypsilanti, Jennifer A Akiyama, Brandon J Mannion, Ingrid Plajzer-Frick, Catherine S Novak, Anne N Harrington, Quan T Pham, Momoe Kato, Yiwen Zhu, Janeth Godoy, Eman Meky, Riana D Hunter, Marie Shi, Evgeny Z Kvon, Veena Afzal, Stella Tran, John L R Rubenstein, Axel Visel, Len A Pennacchio, Diane E Dickel
Ultraconserved enhancer function does not require perfect sequence conservation. Nature genetics 53 (4) (2021)
Marc W Van Goethem, Andrew R Osborn, Benjamin P Bowen, Peter F Andeer, Tami L Swenson, Alicia Clum, Robert Riley, Guifen He, Maxim Koriabine, Laura Sandor, Mi Yan, Christopher Daum, Yuko Yoshinaga, Thulani Peter Makhalanyane, Ferran Garcia-Pichel, Axel Visel, Len A Pennacchio, Ronan C O'Malley, Trent R Northen
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. Communications biology 4 (1) (2021)
Julie Gamart, Iros Barozzi, Frédéric Laurent, Robert Reinhardt, Laurène Ramos Martins, Thomas Oberholzer, Axel Visel, Rolf Zeller, Aimée Zuniga
SMAD4 target genes are part of a transcriptional network that integrates the response to BMP and SHH signaling during early limb bud patterning. Development (Cambridge, England) 148 (23) (2021)
Benjamin J Cole, Dominique Bergmann, Crysten E Blaby-Haas, Ian K Blaby, Kristofer E Bouchard, Siobhan M Brady, Doina Ciobanu, Devin Coleman-Derr, Samuel Leiboff, Jenny C Mortimer, Tatsuya Nobori, Seung Y Rhee, Jeremy Schmutz, Blake A Simmons, Anup K Singh, Neelima Sinha, John P Vogel, Ronan C O'Malley, Axel Visel, Diane E Dickel
Plant single-cell solutions for energy and the environment. Communications biology 4 (1) (2021)
Yupeng He, Manoj Hariharan, David U Gorkin, Diane E Dickel, Chongyuan Luo, Rosa G Castanon, Joseph R Nery, Ah Young Lee, Yuan Zhao, Hui Huang, Brian A Williams, Diane Trout, Henry Amrhein, Rongxin Fang, Huaming Chen, Bin Li, Axel Visel, Len A Pennacchio, Bing Ren, Joseph R Ecker
Spatiotemporal DNA methylome dynamics of the developing mouse fetus. Nature 583 (7818) (2020)
Huan Liu, Kaylia Duncan, Annika Helverson, Priyanka Kumari, Camille Mumm, Yao Xiao, Jenna Colavincenzo Carlson, Fabrice Darbellay, Axel Visel, Elizabeth Leslie, Patrick J Breheny, Albert J Erives, Robert A Cornell
Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18. eLife 9 (2020)
Anurag Sethi, Mengting Gu, Emrah Gumusgoz, Landon Chan, Koon-Kiu Yan, Joel Rozowsky, Iros Barozzi, Veena Afzal, Jennifer A Akiyama, Ingrid Plajzer-Frick, Chengfei Yan, Catherine S Novak, Momoe Kato, Tyler H Garvin, Quan Pham, Anne Harrington, Brandon J Mannion, Elizabeth A Lee, Yoko Fukuda-Yuzawa, Axel Visel, Diane E Dickel, Kevin Y Yip, Richard Sutton, Len A Pennacchio, Mark B Gerstein
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation. Nature methods 17 (8) (2020)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
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