Matthew Hartley

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 15

Top Topics

Electronic Health Record

Arabidopsis Thaliana

Top Venues

bioRxiv : the preprint server for biology

Development (Cambridge, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Tong Li, David Horsfall, Daniela Basurto-Lozada, Kenny Roberts, Martin Prete, John E G Lawrence, Peng He, Elisabeth Tuck, Josh Moore, Aybuke Kupcu Yoldas, Kolawole Babalola, Matthew Hartley, Shila Ghazanfar, Sarah A Teichmann, Muzlifah A Haniffa, Omer Ali Bayraktar
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data. Nature methods (2024)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jordao Bragantini, Jackson M Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Buğra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas J Schaub, Hythem Sidky, Ahmet Can Solak, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Isaac Virshup, Petr Walczysko, Alan M Watson, Erin Weisbart, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Beth A Cimini, Nils Gehlenborg, Muzlifah A Haniffa, Nathan A Hotaling, Shuichi Onami, Loïc Alain Royer, Stephan Saalfeld, Oliver Stegle, Fabian Joachim Theis, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology (2023)
Matthew Hartley, Liviu Anita, Kolawole Babalola, Craig T Russell, Aybüke Küpcü Yoldaş, Teresa Zulueta-Coarasa
Pictures at an exhibition: How to share your imaging data. Journal of microscopy (2023)
Christopher Schmied, Michael S Nelson, Sergiy V Avilov, Gert-Jan Bakker, Cristina Bertocchi, Johanna Bischof, Ulrike Boehm, Jan Brocher, Mariana T Carvalho, Catalin Chiritescu, Jana Christopher, Beth A Cimini, Eduardo Conde-Sousa, Michael Ebner, Rupert C Ecker, Kevin W Eliceiri, Julia Fernandez-Rodriguez, Nathalie Gaudreault, Laurent Gelman, David Grünwald, Tingting Gu, Nadia Halidi, Mathias Hammer, Matthew Hartley, Marie Held, Florian Jug, Varun Kapoor, Ayse Aslihan Koksoy, Judith Lacoste, Sylvia E Le Dévédec, Sylvie Le Guyader, Penghuan Liu, Gabriel G Martins, Aastha Mathur, Kota Miura, Paula Montero Llopis, Roland Nitschke, Alison North, Adam C Parslow, Alex L Payne-Dwyer, Laure Plantard, Rizwan Ali, Britta Schroth-Diez, Lucas Schütz, Ryan T Scott, Arne Seitz, Olaf Selchow, Ved P Sharma, Martin Spitaler, Sathya Srinivasan, Caterina Strambio-De-Castilla, Douglas J Taatjes, Christian Tischer, Helena Klara Jambor
Community-developed checklists for publishing images and image analyses. Nature methods (2023)
Rea Laila Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John A Fozard, Terri Holmes, Lihua Zhao, Huamei Wang, Matthew Hartley, Caroline Dean, Stefanie Rosa, Martin Howard
Integrating analog and digital modes of gene expression at Arabidopsis FLC . eLife 12 (2023)
Damian Dalle Nogare, Matthew Hartley, Joran Deschamps, Jan Ellenberg, Florian Jug
Using AI in bioimage analysis to elevate the rate of scientific discovery as a community. Nature methods 20 (7) (2023)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jackson M Brown, Jean-Marie Burel, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Melissa Linkert, Dominik Lindner, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Matthew McCormick, Khaled Mohamed, William Moore, Buğra Özdemir, Constantin Pape, Lucas Pelkmans, Martin Prete, Tobias Pietzsch, Stephan Preibisch, Norman Rzepka, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Petr Walczysko, Alan M Watson, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Muzlifah A Haniffa, Stephan Saalfeld, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. bioRxiv : the preprint server for biology (2023)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jackson M Brown, Jean-Marie Burel, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Melissa Linkert, Dominik Lindner, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Matthew McCormick, Khaled Mohamed, William Moore, Buğra Özdemir, Constantin Pape, Lucas Pelkmans, Martin Prete, Tobias Pietzsch, Stephan Preibisch, Norman Rzepka, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Petr Walczysko, Alan M Watson, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Muzlifah A Haniffa, Stephan Saalfeld, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. bioRxiv : the preprint server for biology (2023)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jackson M Brown, Jean-Marie Burel, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Melissa Linkert, Dominik Lindner, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Matthew McCormick, Khaled Mohamed, William Moore, Buğra Özdemir, Constantin Pape, Lucas Pelkmans, Martin Prete, Tobias Pietzsch, Stephan Preibisch, Norman Rzepka, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Petr Walczysko, Alan M Watson, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Muzlifah A Haniffa, Stephan Saalfeld, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. bioRxiv : the preprint server for biology (2023)
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John A Bogovic, Jackson M Brown, Jean-Marie Burel, Gustavo de Medeiros, Erin E Diel, David Gault, Satrajit S Ghosh, Ilan Gold, Yaroslav O Halchenko, Matthew Hartley, David Horsfall, Mark S Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Melissa Linkert, Dominik Lindner, Joel Lüthi, Jeremy Maitlin-Shepard, Trevor Manz, Matthew McCormick, Khaled Mohamed, William Moore, Buğra Özdemir, Constantin Pape, Lucas Pelkmans, Martin Prete, Tobias Pietzsch, Stephan Preibisch, Norman Rzepka, David R Stirling, Jonathan Striebel, Christian Tischer, Daniel M Toloudis, Petr Walczysko, Alan M Watson, Frances Wong, Kevin A Yamauchi, Omer Ali Bayraktar, Muzlifah A Haniffa, Stephan Saalfeld, Jason R Swedlow
OME-Zarr: a cloud-optimized bioimaging file format with international community support. bioRxiv : the preprint server for biology (2023)
Marina Millan-Blanquez, Matthew Hartley, Nicholas Bird, Yann Manes, Cristobal Uauy, Scott A Boden
A scalable phenotyping approach for female floral organ development and senescence in the absence of pollination in wheat. Development (Cambridge, England) 149 (18) (2022)
Erica Hawkins, Jiawen Chen, Alexander Watson-Lazowski, Jennifer H Ahn-Jarvis, J Elaine Barclay, Brendan Fahy, Matthew Hartley, Frederick J Warren, David Seung
STARCH SYNTHASE 4 is required for normal starch granule initiation in amyloplasts of wheat endosperm. The New phytologist 230 (6) (2021)
Yara E Sánchez-Corrales, Matthew Hartley, Jop van Rooij, Athanasius F M Marée, Verônica A Grieneisen
Morphometrics of complex cell shapes: lobe contribution elliptic Fourier analysis (LOCO-EFA). Development (Cambridge, England) 145 (6) (2018)
Hongchun Yang, Scott Berry, Tjelvar S G Olsson, Matthew Hartley, Martin Howard, Caroline Dean
Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis. Science (New York, N.Y.) 357 (6356) (2017)
Ross Carter, Yara E Sánchez-Corrales, Matthew Hartley, Verônica A Grieneisen, Athanasius F M Marée
Pavement cells and the topology puzzle. Development (Cambridge, England) 144 (23) (2017)
Scott Berry, Matthew Hartley, Tjelvar S G Olsson, Caroline Dean, Martin Howard
Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance. eLife 4 (2015)