Olga Dudchenko

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Topics

Dna Methylation

Circulating Tumor

Top Venues

Nature genetics

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Author Correction: Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Author Correction: Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature 629 (8010) (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics 56 (6) (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics 56 (6) (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature 629 (8010) (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature 629 (8010) (2024)
Aamir W Khan, Vanika Garg, Shuai Sun, Saurabh Gupta, Olga Dudchenko, Manish Roorkiwal, Annapurna Chitikineni, Philipp Emanuel Bayer, Chengcheng Shi, Hari D Upadhyaya, Abhishek Bohra, Chellapilla Bharadwaj, Reyazul Rouf Mir, Kobi Baruch, Bicheng Yang, Clarice J Coyne, Kailash C Bansal, Henry T Nguyen, Gil Ronen, Erez Lieberman Aiden, Erik J Veneklaas, Kadambot H M Siddique, Xin Liu, David Edwards, Rajeev Kumar Varshney
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea. Nature genetics (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature 629 (8010) (2024)
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Raul Ramos, Axel A Almet, Harsha Sen, Benjamin J Brack, Matthew R Johnson, Sha Li, Wei Wang, Jenna M Gaska, Alexander Ploss, David Weisz, Arina D Omer, Weijie Yao, Zane Colaric, Parwinder Kaur, Judy St Leger, Qing Nie, Alexandria Mena, Joseph P Flanagan, Greta Keller, Thomas Sanger, Bruce Ostrow, Maksim V Plikus, Evgeny Z Kvon, Erez Lieberman Aiden, Ricardo Mallarino
Emx2 underlies the development and evolution of marsupial gliding membranes. Nature (2024)
Vinícius de Godoi Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G Wolynes, José Nelson Onuchic, Michele Di Pierro
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature communications 14 (1) (2023)
J William O Ballard, Matthew A Field, Richard J Edwards, Laura A B Wilson, Loukas George Koungoulos, Benjamin D Rosen, Barry Chernoff, Olga Dudchenko, Arina D Omer, Jens Keilwagen, Ksenia Skvortsova, Ozren Bogdanovic, Eva K F Chan, Robert A Zammit, Vanessa M Hayes, Erez Lieberman Aiden
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology. bioRxiv : the preprint server for biology (2023)
Vinícius de Godoi Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G Wolynes, José Nelson Onuchic, Michele Di Pierro
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature communications 14 (1) (2023)
Hannah L Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, Gesine Cauer, Melanie Pham, Suhas S P Rao, Olga Dudchenko, Arina Omer, Kiana Mohajeri, Sungjae Kim, Michael H Nichols, Eric S Davis, Dimos Gkountaroulis, Devika Udupa, Aviva Presser Aiden, Victor G Corces, Douglas H Phanstiel, William Stafford Noble, Guy Nir, Michele Di Pierro, Jeong-Sun Seo, Michael E Talkowski, Erez Lieberman Aiden, M Jordan Rowley
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nature communications 14 (1) (2023)
Vinícius de Godoi Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G Wolynes, José Nelson Onuchic, Michele Di Pierro
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature communications 14 (1) (2023)
Beryl M Jones, Benjamin E R Rubin, Olga Dudchenko, Callum J Kingwell, Ian M Traniello, Z Yan Wang, Karen M Kapheim, Eli S Wyman, Per A Adastra, Weijie Liu, Lance R Parsons, S RaElle Jackson, Katharine Goodwin, Shawn M Davidson, Matthew J McBride, Andrew E Webb, Kennedy Saitoti Omufwoko, Nikki Van Dorp, Mauricio Fernández Otárola, Melanie Pham, Arina D Omer, David Weisz, Joshua Schraiber, Fernando A Villanea, William T Wcislo, Robert J Paxton, Brendan G Hunt, Erez Lieberman Aiden, Sarah D Kocher
Convergent and complementary selection shaped gains and losses of eusociality in sweat bees. Nature ecology & evolution (2023)
Vinícius de Godoi Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G Wolynes, José Nelson Onuchic, Michele Di Pierro
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature communications 14 (1) (2023)
Vinícius de Godoi Contessoto, Olga Dudchenko, Erez Lieberman Aiden, Peter G Wolynes, José Nelson Onuchic, Michele Di Pierro
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature communications 14 (1) (2023)
Benjamin C Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S Kagda, Keenan Graham, Paul Sud, Aditi K Narayanan, Benjamin C Hitz, Cricket A Sloan, Timothy Dreszer, Laurence D Rowe, Nikhil R Podduturi, Venkat S Malladi, Esther T Chan, Jean M Davidson, Brian T Lee, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L Hong, Laurence D Rowe, Richard S Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S Kim, Nathan Boley, Diane Trout, Alexander Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C Durand, Olga Dudchenko, David Weisz, Suhas S P Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Lieberman Aiden, Thomas R Gingeras, Simon Charles Heath, Martin Hirst, W James Kent, Anshul Kundaje, Ali Mortazavi, Barbara J Wold, J Michael Cherry
The ENCODE Uniform Analysis Pipelines. bioRxiv : the preprint server for biology (2023)
J William O Ballard, Matthew A Field, Richard J Edwards, Laura A B Wilson, Loukas George Koungoulos, Benjamin D Rosen, Barry Chernoff, Olga Dudchenko, Arina D Omer, Jens Keilwagen, Ksenia Skvortsova, Ozren Bogdanovic, Eva K F Chan, Robert A Zammit, Vanessa M Hayes, Erez Lieberman Aiden
The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. GigaScience 12 (2023)
J William O Ballard, Matthew A Field, Richard J Edwards, Laura A B Wilson, Loukas George Koungoulos, Benjamin D Rosen, Barry Chernoff, Olga Dudchenko, Arina D Omer, Jens Keilwagen, Ksenia Skvortsova, Ozren Bogdanovic, Eva K F Chan, Robert A Zammit, Vanessa M Hayes, Erez Lieberman Aiden
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology. bioRxiv : the preprint server for biology (2023)
J William O Ballard, Matthew A Field, Richard J Edwards, Laura A B Wilson, Loukas George Koungoulos, Benjamin D Rosen, Barry Chernoff, Olga Dudchenko, Arina D Omer, Jens Keilwagen, Ksenia Skvortsova, Ozren Bogdanovic, Eva K F Chan, Robert A Zammit, Vanessa M Hayes, Erez Lieberman Aiden
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology. bioRxiv : the preprint server for biology (2023)
Gagan Garg, Lars G Kamphuis, Philipp Emanuel Bayer, Parwinder Kaur, Olga Dudchenko, Candy M Taylor, Karen M Frick, Rhonda C Foley, Ling-Ling Gao, Erez Lieberman Aiden, David Edwards, Karam B Singh
A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits. The Plant journal : for cell and molecular biology 111 (5) (2022)
Diana A Robledo-Ruiz, Han Ming Gan, Parwinder Kaur, Olga Dudchenko, David Weisz, Ruqayya Khan, Erez Lieberman Aiden, Ekaterina Osipova, Michael Hiller, Hernán E Morales, Michael J L Magrath, Rohan H Clarke, Paul Sunnucks, Alexandra Pavlova
Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater. GigaScience 11 (2022)
Matthew A Field, Sonu Yadav, Olga Dudchenko, Meera Esvaran, Benjamin D Rosen, Ksenia Skvortsova, Richard J Edwards, Jens Keilwagen, Blake J Cochran, Bikash Manandhar, Sonia Bustamante, Jacob Agerbo Rasmussen, Richard G Melvin, Barry Chernoff, Arina D Omer, Zane Colaric, Eva K F Chan, Andre E Minoche, Timothy P L Smith, Marcus Thomas Pius Gilbert, Ozren Bogdanovic, Robert A Zammit, Torsten Thomas, Erez Lieberman Aiden, J William O Ballard
The Australian dingo is an early offshoot of modern breed dogs. Science advances 8 (16) (2022)
Claire Hoencamp, Olga Dudchenko, Ahmed M O Elbatsh, Sumitabha Brahmachari, Jonne A Raaijmakers, Tom van Schaik, Ángela Sedeño Cacciatore, Vinícius de Godoi Contessoto, Roy G H P van Heesbeen, Bram van den Broek, Aditya N Mhaskar, Hans Teunissen, Brian Glenn St Hilaire, David Weisz, Arina D Omer, Melanie Pham, Zane Colaric, Zhenzhen Yang, Suhas S P Rao, Namita Mitra, Christopher G Lui, Weijie Yao, Ruqayya Khan, Leonid L Moroz, Andrea Kohn, Judy St Leger, Alexandria Mena, Karen Holcroft, Maria Cristina Gambetta, Fabian Lim, Emma Kirsten Farley, Nils Stein, Alexander Haddad, Daniel Chauss, Ayse Sena Mutlu, Meng C Wang, Neil David Young, Evin Hildebrandt, Hans H Cheng, Christopher J Knight, Theresa L U Burnham, Kevin A Hovel, Andrew J Beel, Pierre-Jean Mattei, Roger D Kornberg, Wesley C Warren, Veronica F Hinman, José Luis Gómez-Skarmeta, Veronica F Hinman, Kerstin Lindblad-Toh, Federica Di Palma, Kazuhiro Maeshima, Asha S Multani, Sen Pathak, Liesl Nel-Themaat, Richard R Behringer, Parwinder Kaur, René H Medema, Bas van Steensel, Elzo de Wit, José Nelson Onuchic, Michele Di Pierro, Erez Lieberman Aiden, Benjamin D Rowland
3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science (New York, N.Y.) 372 (6545) (2021)
Sydney Lamb, Adam M Taylor, Tabitha A Hughes, Brock R McMillan, Randy T Larsen, Ruqayya Khan, David Weisz, Olga Dudchenko, Erez Lieberman Aiden, Nathaniel B Edelman, Paul B Frandsen
De novo chromosome-length assembly of the mule deer ( Odocoileus hemionus ) genome. GigaByte (Hong Kong, China) 2021 (2021)
Sydney Lamb, Adam M Taylor, Tabitha A Hughes, Brock R McMillan, Randy T Larsen, Ruqayya Khan, David Weisz, Olga Dudchenko, Erez Lieberman Aiden, Nathaniel B Edelman, Paul B Frandsen
De novo chromosome-length assembly of the mule deer ( Odocoileus hemionus ) genome. GigaByte (Hong Kong, China) 2021 (2021)
Matthew H Van Dam, Analyn Anzano Cabras, James B Henderson, Andrew J Rominger, Cynthia Pérez Estrada, Arina D Omer, Olga Dudchenko, Erez Lieberman Aiden, Athena Wai Lam
The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution. PLoS genetics 17 (8) (2021)
David John Bertioli, Jerry W Jenkins, Josh Clevenger, Olga Dudchenko, Dongying Gao, Guillermo Seijo, Soraya C M Leal-Bertioli, Longhui Ren, Andrew D Farmer, Manish K Pandey, Sergio S Samoluk, Brian Abernathy, Gaurav Agarwal, Carolina Ballén-Taborda, Connor Cameron, Jacqueline D Campbell, Carolina Chavarro, Annapurna Chitikineni, Ye Chu, Sudhansu Dash, Moaine El Baidouri, Baozhu Guo, Wei Huang, Kyung Do Kim, Walid Korani, Sophie Lanciano, Christopher G Lui, Marie Mirouze, Márcio C Moretzsohn, Melanie Pham, Jin Hee Shin, Kenta Shirasawa, Senjuti Sinharoy, Avinash Sreedasyam, Nathan T Weeks, Xinyou Zhang, Zheng Zheng, Ziqi Sun, Lutz Froenicke, Erez L Aiden, Richard Michelmore, Rajeev Kumar Varshney, C Corley Holbrook, Ethalinda K S Cannon, Brian E Scheffler, Jane Grimwood, Peggy Ozias-Akins, Steven B Cannon, Scott A Jackson, Jeremy Schmutz
The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature genetics 51 (5) (2019)
Olga Dudchenko, Sanjit S Batra, Arina D Omer, Sarah K Nyquist, Marie Hoeger, Neva C Durand, Muhammad Saad Shamim, Ido Machol, Eric S Lander, Aviva Presser Aiden, Erez Lieberman Aiden
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science (New York, N.Y.) 356 (6333) (2017)