Mats Ljungman

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 19

Top Topics

Embryonic Stem Cells

Gene Expression

Top Venues

Clinical cancer research : an official journal of the American Association for Cancer Research

Nature communications

RNA (New York, N.Y.)

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Priya Mittal, Jacquelyn A Myers, Raymond D Carter, Sandi Radko-Juettner, Hayden A Malone, Wojciech Rosikiewicz, Alexis N Robertson, Zhexin Zhu, Ishwarya V Narayanan, Baranda S Hansen, Meadow Parrish, Natarajan V Bhanu, Robert Jackson Mobley, Jerold E Rehg, Bei-Si Xu, Yiannis Drosos, Shondra M Pruett-Miller, Mats Ljungman, Benjamin A Garcia, Gang Wu, Janet F Partridge, Charles W M Roberts
PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progression. Nature communications 15 (1) (2024)
Priya Mittal, Jacquelyn A Myers, Raymond D Carter, Sandi Radko-Juettner, Hayden A Malone, Wojciech Rosikiewicz, Alexis N Robertson, Zhexin Zhu, Ishwarya V Narayanan, Baranda S Hansen, Meadow Parrish, Natarajan V Bhanu, Robert Jackson Mobley, Jerold E Rehg, Bei-Si Xu, Yiannis Drosos, Shondra M Pruett-Miller, Mats Ljungman, Benjamin A Garcia, Gang Wu, Janet F Partridge, Charles W M Roberts
PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progression. Nature communications 15 (1) (2024)
Priya Mittal, Jacquelyn A Myers, Raymond D Carter, Sandi Radko-Juettner, Hayden A Malone, Wojciech Rosikiewicz, Alexis N Robertson, Zhexin Zhu, Ishwarya V Narayanan, Baranda S Hansen, Meadow Parrish, Natarajan V Bhanu, Robert Jackson Mobley, Jerold E Rehg, Bei-Si Xu, Yiannis Drosos, Shondra M Pruett-Miller, Mats Ljungman, Benjamin A Garcia, Gang Wu, Janet F Partridge, Charles W M Roberts
PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progression. Nature communications 15 (1) (2024)
Stephen V Carney, Kaushik Banerjee, Anzar A Mujeeb, Brandon Zhu, Santiago Haase, María Luisa Varela, Padma Kadiyala, Claire E Tronrud, Ziwen Zhu, Devarshi Mukherji, Preethi Gorla, Yilun Sun, Rebecca Tagett, Felipe J Núñez, Maowu Luo, Maowu Luo, Mats Ljungman, Yayuan Liu, Ziyun Xia, Anna A Schwendeman, Tingting Qin, Maureen A Sartor, Joseph F Costello, Daniel P Cahill, Pedro R Lowenstein, Maria Graciela Castro
Zinc Finger MYND-Type Containing 8 (ZMYND8) is epigenetically regulated in mutant Isocitrate Dehydrogenase 1 (IDH1) glioma to promote radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Huibin Yang, Radhika Suhas Hulbatte, Alan Kelleher, Natalie Gratsch, Yin Wang, Philip L Palmbos, Mats Ljungman
KLIPP - a precision CRISPR approach to target structural variant junctions in cancer. bioRxiv : the preprint server for biology (2023)
Ashley F Melnick, Carea Mullin, Karena Lin, Anna C McCarter, Shannon Liang, Yiran E Liu, Qing Wang, Nicole A Jerome, Elizabeth Choe, Nicholas Kunnath, Geethika Bodanapu, Fatema Akter, Brian Magnuson, Surinder Kumar, David B Lombard, Andrew G Muntean, Mats Ljungman, JoAnn M Sekiguchi, Russell J H Ryan, Mark Y Chiang
Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress. Blood (2023)
Stephen V Carney, Kaushik Banerjee, Anzar A Mujeeb, Brandon Zhu, Santiago Haase, María Luisa Varela, Padma Kadiyala, Claire E Tronrud, Ziwen Zhu, Devarshi Mukherji, Preethi Gorla, Yilun Sun, Rebecca Tagett, Felipe J Núñez, Maowu Luo, Maowu Luo, Mats Ljungman, Yayuan Liu, Ziyun Xia, Anna A Schwendeman, Tingting Qin, Maureen A Sartor, Joseph F Costello, Daniel P Cahill, Pedro R Lowenstein, Maria Graciela Castro
Zinc Finger MYND-Type Containing 8 (ZMYND8) is epigenetically regulated in mutant Isocitrate Dehydrogenase 1 (IDH1) glioma to promote radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Monika Sharma, Ivana Barravecchia, Robert Teis, Jeanette Cruz, Rachel Mumby, Elizabeth K Ziemke, Carlos E Espinoza, Varunkumar Krishnamoorthy, Brian R Magnuson, Mats Ljungman, Carl J Koschmann, Joya Chandra, Christopher E Whitehead, Judith S Sebolt-Leopold, Stefanie Galban
Targeting DNA Repair and Survival Signaling in Diffuse Intrinsic Pontine Gliomas to Prevent Tumor Recurrence. Molecular cancer therapeutics (2023)
Fairlie Reese, Brian A Williams, Gabriela Balderrama-Gutierrez, Dana Wyman, Muhammed Hasan Çelik, Elisabeth Rebboah, Narges Rezaie, Diane Trout, Milad Razavi-Mohseni, Yunzhe Jiang, Beatrice Borsari, Samuel J Morabito, Heidi Yahan Liang, Cassandra J McGill, Sorena Rahmanian, Jasmine Sakr, Shan Jiang, Weihua Zeng, Klebea Carvalho, Annika K Weimer, Louise A Dionne, Ariel McShane, Karan Bedi, Shaimae I Elhajjajy, Sean Upchurch, Jennifer Jou, Ingrid Youngworth, Aditi K Narayanan, Paul Sud, Otto Jolanki, Benjamin C Hitz, Meenakshi S Kagda, Michael Paul Snyder, Benjamin C Hitz, Jill E Moore, Nishigandha Phalke, David A Bennett, Laura G Reinholdt, Mats Ljungman, Michael A Beer, Mark B Gerstein, Lior Pachter, Roderic Guigo, Barbara J Wold, Ali Mortazavi
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity. bioRxiv : the preprint server for biology (2023)
Stephen V Carney, Kaushik Banerjee, Anzar A Mujeeb, Brandon Zhu, Santiago Haase, María Luisa Varela, Padma Kadiyala, Claire E Tronrud, Ziwen Zhu, Devarshi Mukherji, Preethi Gorla, Yilun Sun, Rebecca Tagett, Felipe J Núñez, Maowu Luo, Maowu Luo, Mats Ljungman, Yayuan Liu, Ziyun Xia, Anna A Schwendeman, Tingting Qin, Maureen A Sartor, Joseph F Costello, Daniel P Cahill, Pedro R Lowenstein, Maria Graciela Castro
Zinc Finger MYND-Type Containing 8 (ZMYND8) is epigenetically regulated in mutant Isocitrate Dehydrogenase 1 (IDH1) glioma to promote radioresistance. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Jing Yang, Lin Jin, Hong Sun Kim, Feng Tian, Zhujun Yi, Karan Bedi, Mats Ljungman, Marina Pasca Di Magliano, Howard C Crawford, Jiaqi Shi
KDM6A Loss Recruits Tumor-Associated Neutrophils and Promotes Neutrophil Extracellular Trap Formation in Pancreatic Cancer. Cancer research 82 (22) (2022)
Karan Bedi, Brian R Magnuson, Ishwarya Narayanan, Michelle Paulsen, Thomas E Wilson, Mats Ljungman
Co-transcriptional splicing efficiencies differ within genes and between cell types. RNA (New York, N.Y.) (2021)
So Hae Park, Pamela Bennett-Baker, Samreen Ahmed, Martin F Arlt, Mats Ljungman, Thomas W Glover, Thomas E Wilson
Locus-specific transcription silencing at the FHIT gene suppresses replication stress-induced copy number variant formation and associated replication delay. Nucleic acids research 49 (13) (2021)
Yana van der Weegen, Klaas de Lint, Diana van den Heuvel, Yuka Nakazawa, Tycho E T Mevissen, Janne J M van Schie, Marta San Martin Alonso, Daphne E C Boer, Román González-Prieto, Ishwarya V Narayanan, Noud H M Klaassen, Annelotte P Wondergem, Khashayar Roohollahi, Josephine C Dorsman, Yuichiro Hara, Alfred C O Vertegaal, Job de Lange, Johannes C Walter, Sylvie M Noordermeer, Mats Ljungman, Tomoo Ogi, Rob M F Wolthuis, Martijn S Luijsterburg
ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation. Nature cell biology 23 (6) (2021)
Michael B Wolfe, Trista L Schagat, Michelle T Paulsen, Brian R Magnuson, Mats Ljungman, Daeyoon Park, Chi Zhang, Zachary T Campbell, Aaron C Goldstrohm, Peter L Freddolino
Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis. RNA (New York, N.Y.) 26 (11) (2020)
Felipe J Núñez, Flor M Mendez, Padma Kadiyala, Mahmoud S Alghamri, Masha Georges Savelieff, Maria B Garcia-Fabiani, Santiago Haase, Carl Koschmann, Anda-Alexandra Calinescu, Neha Kamran, Meghna Saxena, Rohin Patel, Stephen V Carney, Marissa Z Guo, Marta Edwards, Mats Ljungman, Tingting Qin, Maureen A Sartor, Rebecca Tagett, Sriram Venneti, Jacqueline A Brosnan-Cashman, Alan Meeker, Vera Gorbunova, Lili Zhao, Daniel M Kremer, Li Zhang, Costas Andreas Lyssiotis, Lindsey E Jones, Cameron J Herting, James L Ross, Dolores Hambardzumyan, Shawn Hervey-Jumper, Maria E Figueroa, Pedro R Lowenstein
IDH1-R132H acts as a tumor suppressor in glioma via epigenetic up-regulation of the DNA damage response. Science translational medicine 11 (479) (2020)
Hui Yao, Douglas F Hannum, Yiwen Zhai, Sophie F Hill, Ricardo D 'Oliveira Albanus, Wenjia Lou, Jennifer M Skidmore, Gilson Sanchez, Alina Saiakhova, Stephanie L Bielas, Peter Scacheri, Mats Ljungman, Stephen C J Parker, Donna M Martin
CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression. Scientific reports 10 (1) (2020)
Karan Bedi, Michelle T Paulsen, Thomas E Wilson, Mats Ljungman
Characterization of novel primary miRNA transcription units in human cells using Bru-seq nascent RNA sequencing. NAR genomics and bioinformatics 2 (1) (2019)
Killeen S Kirkconnell, Michelle T Paulsen, Brian Magnuson, Karan Bedi, Mats Ljungman
Capturing the dynamic nascent transcriptome during acute cellular responses: The serum response. Biology open 5 (6) (2016)