Yan Xu

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 35

Top Venues

Nature communications

Thorax

Science advances

bioRxiv : the preprint server for biology

Cincinnati Children's Hospital Medical Center

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Cincinnati Children's Hospital Medical Center Jan 02 2002

United States

Professor :: Pulmonary Biology and Biomedical Informatics

Publications

Hua He, Sheila M Bell, Ashley Kuenzi Davis, Shuyang Zhao, Anusha Sridharan, Cheng-Lun Na, Minzhe Guo, Yan Xu, John Snowball, Daniel T Swarr, William J Zacharias, Jeffrey A Whitsett
PRDM3/16 regulate chromatin accessibility required for NKX2-1 mediated alveolar epithelial differentiation and function. Nature communications 15 (1) (2024)
Natalia Bottasso-Arias, Megha Mohanakrishnan, Sarah Trovillion, Kaulini Burra, Nicholas X Russell, Yixin Wu, Yan Xu, Debora I Sinner
Wnt5a and Notum Influence the Temporal Dynamics of Cartilaginous Mesenchymal Condensations in Developing Trachea. bioRxiv : the preprint server for biology (2024)
Yasuaki Uehara, Yusuke Tanaka, Shuyang Zhao, Nikolaos M Nikolaidis, Lori B Pitstick, Huixing Wu, Jane J Yu, Erik Zhang, Yoshihiro Hasegawa, John G Noel, Jason C Gardner, Elizabeth J Kopras, Wendy D Haffey, Kenneth D Greis, Jinbang Guo, Jason C Woods, Kathryn A Wikenheiser-Brokamp, Jennifer E Kyle, Charles Ansong, Steven L Teitelbaum, Yoshikazu Inoue, Göksel Altınışık, Yan Xu, Francis X McCormack
Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis. Nature communications 14 (1) (2023)
Fenghua Bian, Ying-Wei Lan, Shuyang Zhao, Zicheng Deng, Samriddhi Shukla, Anusha Acharya, Johnny Donovan, Tien Le, David Milewski, Matthew Bacchetta, Ahmed Emad Hozain, Yuliya Tipograf, Ya-Wen Chen, Yan Xu, Donglu Shi, Vladimir V Kalinichenko, Tanya V Kalin
Lung endothelial cells regulate pulmonary fibrosis through FOXF1/R-Ras signaling. Nature communications 14 (1) (2023)
Hua He, Sheila M Bell, Ashley Kuenzi Davis, Shuyang Zhao, Anusha Sridharan, Cheng-Lun Na, Minzhe Guo, Yan Xu, John Snowball, Daniel T Swarr, William J Zacharias, Jeffrey A Whitsett
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function. bioRxiv : the preprint server for biology (2023)
Yasuaki Uehara, Yusuke Tanaka, Shuyang Zhao, Nikolaos M Nikolaidis, Lori B Pitstick, Huixing Wu, Jane J Yu, Erik Zhang, Yoshihiro Hasegawa, John G Noel, Jason C Gardner, Elizabeth J Kopras, Wendy D Haffey, Kenneth D Greis, Jinbang Guo, Jason C Woods, Kathryn A Wikenheiser-Brokamp, Jennifer E Kyle, Charles Ansong, Steven L Teitelbaum, Yoshikazu Inoue, Göksel Altınışık, Yan Xu, Francis X McCormack
Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis. Nature communications 14 (1) (2023)
Hua He, Sheila M Bell, Ashley Kuenzi Davis, Shuyang Zhao, Anusha Sridharan, Cheng-Lun Na, Minzhe Guo, Yan Xu, John Snowball, Daniel T Swarr, William J Zacharias, Jeffrey A Whitsett
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function. bioRxiv : the preprint server for biology (2023)
Minzhe Guo, Michael P Morley, Cheng Jiang, Yixin Wu, Guangyuan Li, Yina Du, Shuyang Zhao, Andrew Wagner, Adnan Cihan Cakar, Michal Kouril, Kang Jin, Nathan Gaddis, Joseph A Kitzmiller, Kathleen Stewart, Maria C Basil, Susan M Lin, Yun Ying, Apoorva Babu, Kathryn A Wikenheiser-Brokamp, Kyu Shik Mun, Anjaparavanda P Naren, Geremy C Clair, Joshua N Adkins, Gloria S Pryhuber, Ravi S Misra, Bruce J Aronow, Timothy L Tickle, Nathan Salomonis, Xin Sun, Edward E Morrisey, Jeffrey A Whitsett, null null, Yan Xu
Guided construction of single cell reference for human and mouse lung. Nature communications 14 (1) (2023)
Tasnim Olatoke, Andrew Wagner, Aristotelis Astrinidis, Erik Y Zhang, Minzhe Guo, Alan G Zhang, Ushodaya Mattam, Elizabeth J Kopras, Nishant Gupta, Eric P Smith, Magdalena Karbowniczek, Maciej M Markiewski, Kathryn A Wikenheiser-Brokamp, Jeffrey A Whitsett, Francis X McCormack, Yan Xu, Jane J Yu
Single-cell multiomic analysis identifies a HOX-PBX gene network regulating the survival of lymphangioleiomyomatosis cells. Science advances 9 (19) (2023)
Tasnim Olatoke, Andrew Wagner, Aristotelis Astrinidis, Erik Y Zhang, Minzhe Guo, Alan G Zhang, Ushodaya Mattam, Elizabeth J Kopras, Nishant Gupta, Eric P Smith, Magdalena Karbowniczek, Maciej M Markiewski, Kathryn A Wikenheiser-Brokamp, Jeffrey A Whitsett, Francis X McCormack, Yan Xu, Jane J Yu
Single-cell multiomic analysis identifies a HOX-PBX gene network regulating the survival of lymphangioleiomyomatosis cells. Science advances 9 (19) (2023)
Tasnim Olatoke, Andrew Wagner, Aristotelis Astrinidis, Erik Y Zhang, Minzhe Guo, Alan G Zhang, Ushodaya Mattam, Elizabeth J Kopras, Nishant Gupta, Eric P Smith, Magdalena Karbowniczek, Maciej M Markiewski, Kathryn A Wikenheiser-Brokamp, Jeffrey A Whitsett, Francis X McCormack, Yan Xu, Jane J Yu
Single-cell multiomic analysis identifies a HOX-PBX gene network regulating the survival of lymphangioleiomyomatosis cells. Science advances 9 (19) (2023)
Fenghua Bian, Ying-Wei Lan, Shuyang Zhao, Zicheng Deng, Samriddhi Shukla, Anusha Acharya, Johnny Donovan, Tien Le, David Milewski, Matthew Bacchetta, Ahmed Emad Hozain, Yuliya Tipograf, Ya-Wen Chen, Yan Xu, Donglu Shi, Vladimir V Kalinichenko, Tanya V Kalin
Lung endothelial cells regulate pulmonary fibrosis through FOXF1/R-Ras signaling. Nature communications 14 (1) (2023)
Yasuaki Uehara, Yusuke Tanaka, Shuyang Zhao, Nikolaos M Nikolaidis, Lori B Pitstick, Huixing Wu, Jane J Yu, Erik Zhang, Yoshihiro Hasegawa, John G Noel, Jason C Gardner, Elizabeth J Kopras, Wendy D Haffey, Kenneth D Greis, Jinbang Guo, Jason C Woods, Kathryn A Wikenheiser-Brokamp, Jennifer E Kyle, Charles Ansong, Steven L Teitelbaum, Yoshikazu Inoue, Göksel Altınışık, Yan Xu, Francis X McCormack
Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis. Nature communications 14 (1) (2023)
Yasuaki Uehara, Yusuke Tanaka, Shuyang Zhao, Nikolaos M Nikolaidis, Lori B Pitstick, Huixing Wu, Jane J Yu, Erik Zhang, Yoshihiro Hasegawa, John G Noel, Jason C Gardner, Elizabeth J Kopras, Wendy D Haffey, Kenneth D Greis, Jinbang Guo, Jason C Woods, Kathryn A Wikenheiser-Brokamp, Jennifer E Kyle, Charles Ansong, Steven L Teitelbaum, Yoshikazu Inoue, Göksel Altınışık, Yan Xu, Francis X McCormack
Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis. Nature communications 14 (1) (2023)
Fenghua Bian, Ying-Wei Lan, Shuyang Zhao, Zicheng Deng, Samriddhi Shukla, Anusha Acharya, Johnny Donovan, Tien Le, David Milewski, Matthew Bacchetta, Ahmed Emad Hozain, Yuliya Tipograf, Ya-Wen Chen, Yan Xu, Donglu Shi, Vladimir V Kalinichenko, Tanya V Kalin
Lung endothelial cells regulate pulmonary fibrosis through FOXF1/R-Ras signaling. Nature communications 14 (1) (2023)
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel C Strobl, Tessa E Gillett, Luke Zappia, Elo Madissoon, Nikolay S Markov, Laure-Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore C A Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal Inecik, Manu Jain, Theodore S Kapellos, Tessa M Kole, Sylvie Leroy, Christoph H Mayr, Amanda J Oliver, Michael von Papen, Lance Peter, Chase J Taylor, Thomas Walzthoeni, Chuan Xu, Linh T Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J Gutierrez, Lukas Heumos, Ni Huang, Ignacio L Ibarra, Nathan D Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-López, Kyle J Travaglini, Anna Wilbrey-Clark, Kaylee B Worlock, Masahiro Yoshida, null null, Maarten van den Berge, Yohan Bosse, Tushar J Desai, Oliver Eickelberg, Naftali Kaminski, Mark A Krasnow, Robert A Lafyatis, Marko Z Nikolić, Joseph E Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt-Rosen, Max A Seibold, Dean Sheppard, Douglas P Shepherd, Don D Sin, Hidde J Haisma, Alexander M Tsankov, Jeffrey A Whitsett, Yan Xu, Nicholas E Banovich, Pascal Barbry, Elizabeth Thu Duong, Christine S Falk, Kerstin B Meyer, Jonathan A Kropski, Dana Pe'er, Herbert B Schiller, Purushothama Rao Tata, Joachim L Schultze, Sarah A Teichmann, Alexander V Misharin, Martijn C Nawijn, Malte Daniel Luecken, Fabian Joachim Theis
An integrated cell atlas of the lung in health and disease. Nature medicine (2023)
Fenghua Bian, Ying-Wei Lan, Shuyang Zhao, Zicheng Deng, Samriddhi Shukla, Anusha Acharya, Johnny Donovan, Tien Le, David Milewski, Matthew Bacchetta, Ahmed Emad Hozain, Yuliya Tipograf, Ya-Wen Chen, Yan Xu, Donglu Shi, Vladimir V Kalinichenko, Tanya V Kalin
Lung endothelial cells regulate pulmonary fibrosis through FOXF1/R-Ras signaling. Nature communications 14 (1) (2023)
Hua He, Sheila M Bell, Ashley Kuenzi Davis, Shuyang Zhao, Anusha Sridharan, Cheng-Lun Na, Minzhe Guo, Yan Xu, John Snowball, Daniel T Swarr, William J Zacharias, Jeffrey A Whitsett
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function. bioRxiv : the preprint server for biology (2023)
Hua He, Sheila M Bell, Ashley Kuenzi Davis, Shuyang Zhao, Anusha Sridharan, Cheng-Lun Na, Minzhe Guo, Yan Xu, John Snowball, Daniel T Swarr, William J Zacharias, Jeffrey A Whitsett
PRDM3/16 Regulate Chromatin Accessibility Required for NKX2-1 Mediated Alveolar Epithelial Differentiation and Function. bioRxiv : the preprint server for biology (2023)
Yasuaki Uehara, Yusuke Tanaka, Shuyang Zhao, Nikolaos M Nikolaidis, Lori B Pitstick, Huixing Wu, Jane J Yu, Erik Zhang, Yoshihiro Hasegawa, John G Noel, Jason C Gardner, Elizabeth J Kopras, Wendy D Haffey, Kenneth D Greis, Jinbang Guo, Jason C Woods, Kathryn A Wikenheiser-Brokamp, Jennifer E Kyle, Charles Ansong, Steven L Teitelbaum, Yoshikazu Inoue, Göksel Altınışık, Yan Xu, Francis X McCormack
Insights into pulmonary phosphate homeostasis and osteoclastogenesis emerge from the study of pulmonary alveolar microlithiasis. Nature communications 14 (1) (2023)
Tasnim Olatoke, Andrew Wagner, Aristotelis Astrinidis, Erik Y Zhang, Minzhe Guo, Alan G Zhang, Ushodaya Mattam, Elizabeth J Kopras, Nishant Gupta, Eric P Smith, Magdalena Karbowniczek, Maciej M Markiewski, Kathryn A Wikenheiser-Brokamp, Jeffrey A Whitsett, Francis X McCormack, Yan Xu, Jane J Yu
Single-cell multiomic analysis identifies a HOX-PBX gene network regulating the survival of lymphangioleiomyomatosis cells. Science advances 9 (19) (2023)
Tasnim Olatoke, Andrew Wagner, Aristotelis Astrinidis, Erik Y Zhang, Minzhe Guo, Alan G Zhang, Ushodaya Mattam, Elizabeth J Kopras, Nishant Gupta, Eric P Smith, Magdalena Karbowniczek, Maciej M Markiewski, Kathryn A Wikenheiser-Brokamp, Jeffrey A Whitsett, Francis X McCormack, Yan Xu, Jane J Yu
Single-cell multiomic analysis identifies a HOX-PBX gene network regulating the survival of lymphangioleiomyomatosis cells. Science advances 9 (19) (2023)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Joseph Stevens, Shelby Steinmeyer, Madeline Bonfield, Laura S Peterson, Timothy Wang, Jerilyn Gray, Ian P Lewkowich, Yan Xu, Yina Du, Minzhe Guo, James Lawrence Wynn, William J Zacharias, Nathan Salomonis, Lisa A Miller, Claire A Chougnet, Dennis Hartigan O'Connor, Hitesh Deshmukh
The balance between protective and pathogenic immune responses to pneumonia in the neonatal lung is enforced by gut microbiota. Science translational medicine 14 (649) (2022)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Andrea Toth, Shelby Steinmeyer, Paranthaman Kannan, Jerilyn Gray, Courtney M Jackson, Shibabrata Mukherjee, Martin Demmert, Joshua R Sheak, Daniel Benson, Joseph Kitzmiller, Joseph A Wayman, Pietro Presicce, Christopher Cates, Rhea Rubin, Kashish Chetal, Yina Du, Yifei Miao, Mingxia Gu, Minzhe Guo, Vladimir V Kalinichenko, Suhas G Kallapur, Emily R Miraldi, Yan Xu, Daniel T Swarr, Ian P Lewkowich, Nathan Salomonis, Lisa A Miller, Jennifer M S Sucre, Jeffrey A Whitsett, Claire A Chougnet, Alan H Jobe, Hitesh Deshmukh, William J Zacharias
Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates. Science translational medicine 14 (638) (2022)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Yina Du, Minzhe Guo, Yixin Wu, Andrew Wagner, Anne Karina Perl, Kathryn Wikenheiser-Brokamp, Jane Yu, Nishant Gupta, Elizabeth Kopras, Vera Krymskaya, Kseniya Obraztsova, Yan Tang, David Kwiatkowski, Elizabeth P Henske, Francis McCormack, Yan Xu
Lymphangioleiomyomatosis (LAM) Cell Atlas. Thorax 78 (1) (2022)
Yina Du, Weichen Ouyang, Joseph A Kitzmiller, Minzhe Guo, Shuyang Zhao, Jeffrey A Whitsett, Yan Xu
Lung Gene Expression Analysis Web Portal Version 3: Lung-at-a-Glance. American journal of respiratory cell and molecular biology 64 (1) (2021)
James P Bridges, Parvathi Sudha, Dakota Lipps, Andrew Wagner, Minzhe Guo, Yina Du, Kari Brown, Alyssa Filuta, Joseph Kitzmiller, Courtney Stockman, Xiaoting Chen, Matthew T Weirauch, Alan H Jobe, Jeffrey A Whitsett, Yan Xu
Glucocorticoid regulates mesenchymal cell differentiation required for perinatal lung morphogenesis and function. American journal of physiology. Lung cellular and molecular physiology 319 (2) (2020)
Kristin M Hudock, Margaret S Collins, Michelle Imbrogno, John Snowball, Elizabeth L Kramer, John J Brewington, Kandace Gollomp, Cormac McCarthy, Alicia J Ostmann, Elizabeth J Kopras, Cynthia R Davidson, Anusha Srdiharan, Paritha Arumugam, Shaon Sengupta, Yan Xu, G Scott Worthen, Bruce C Trapnell, John Paul Clancy
Neutrophil extracellular traps activate IL-8 and IL-1 expression in human bronchial epithelia. American journal of physiology. Lung cellular and molecular physiology 319 (1) (2020)
Yina Du, Geremy C Clair, Denise Al Alam, Soula Danopoulos, Daniel Schnell, Joseph A Kitzmiller, Ravi S Misra, Soumyaroop Bhattacharya, David Warburton, Thomas J Mariani, Gloria S Pryhuber, Jeffrey A Whitsett, Charles Ansong, Yan Xu
Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung. American journal of physiology. Lung cellular and molecular physiology 317 (3) (2019)
Minzhe Guo, Yina Du, Jason J Gokey, Samriddha Ray, Sheila M Bell, Mike Adam, Parvathi Sudha, Anne Karina Perl, Hitesh Deshmukh, S Steven Potter, Jeffrey A Whitsett, Yan Xu
Single cell RNA analysis identifies cellular heterogeneity and adaptive responses of the lung at birth. Nature communications 10 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yan Xu