Jishnu Das

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 47

Top Venues

Nature computational science

Nature communications

Nature methods

Nature immunology

University of Pittsburgh School of Medicine

Cornell University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pittsburgh School of Medicine

United States

Assistant Professor

Massachusetts General Hospital

United States

Research Fellow :: Ragon Institute

Massachusetts Institute of Technology

United States

Visiting Scientist :: Bioengineering

Education History

Cornell University

United States

PHD :: Biological Statistics and Computational Biology

Indian Institute of Technology Kanpur

India

BSC

Publications

Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology 25 (6) (2024)
Alisa A Omelchenko, Jane C Siwek, Prabal Chhibbar, Sanya Arshad, Iliyan Nazarali, Kiran Nazarali, AnnaElaine Rosengart, Javad Rahimikollu, Jeremy Tilstra, Mark J Shlomchik, David R Koes, Alok V Joglekar, Jishnu Das
Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions. bioRxiv : the preprint server for biology (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science (2024)
Stephanie Grebinoski, Gwenyth Pieklo, Qianxia Zhang, Anabelle Visperas, Jian Cui, Jordana Goulet, Hanxi Xiao, Erin A Brunazzi, Carly Cardello, Andrés A Herrada, Jishnu Das, Creg J Workman, Dario A A Vignali
Regulatory T Cell Insufficiency in Autoimmune Diabetes Is Driven by Selective Loss of Neuropilin-1 on Intraislet Regulatory T Cells. Journal of immunology (Baltimore, Md. : 1950) (2024)
Yang Li, Shachi P Vyas, Isha Mehta, Nariaki Asada, Ipsita Dey, Tiffany C Taylor, Rami Bechara, Nilesh Amatya, Felix E Y Aggor, Bianca M Coleman, De-Dong Li, Kenta Yamamoto, Ogechukwu Ezenwa, Yeque Sun, Esta Sterneck, Charles Joel McManus, Ulf Panzer, Partha S Biswas, Ram Savan, Jishnu Das, Sarah L Gaffen
The RNA binding protein Arid5a drives IL-17-dependent autoantibody-induced glomerulonephritis. The Journal of experimental medicine 221 (9) (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology 25 (6) (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology (2024)
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Dianyu Chen, Louis Chi-Wai Lau, Peter Habib Gerges, Kashish Chetal, Prabal Chhibbar, Jingyu Fan, Jishnu Das, Alok V Joglekar, Lisa Borghesi, Nathan Salomonis, Heping Xu, Harinder Singh
Temporal dynamics and genomic programming of plasma cell fates. Nature immunology (2024)
Alisa A Omelchenko, Jane C Siwek, Prabal Chhibbar, Sanya Arshad, Iliyan Nazarali, Kiran Nazarali, AnnaElaine Rosengart, Javad Rahimikollu, Jeremy Tilstra, Mark J Shlomchik, David R Koes, Alok V Joglekar, Jishnu Das
Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions. bioRxiv : the preprint server for biology (2024)
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Paul M Zdinak, Kun He, Xin Bing, Florentina Bunea, Marten Wegkamp, Amanda C Poholek, Alok V Joglekar, Robert A Lafyatis, Jishnu Das
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains. Nature methods 21 (5) (2024)
Niranjana Natarajan, Jonathan Florentin, Ebin Johny, Hanxi Xiao, Scott Patrick O'Neil, Liqun Lei, Jixing Shen, Lee Ohayon, Aaron R Johnson, Krithika Rao, Xiaoyun Li, Yanwu Zhao, Yingze Zhang, Sina Tavakoli, Sruti Shiva, Jishnu Das, Partha Dutta
Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis. Nature communications 15 (1) (2024)
Niranjana Natarajan, Jonathan Florentin, Ebin Johny, Hanxi Xiao, Scott Patrick O'Neil, Liqun Lei, Jixing Shen, Lee Ohayon, Aaron R Johnson, Krithika Rao, Xiaoyun Li, Yanwu Zhao, Yingze Zhang, Sina Tavakoli, Sruti Shiva, Jishnu Das, Partha Dutta
Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis. Nature communications 15 (1) (2024)
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Paul M Zdinak, Kun He, Xin Bing, Florentina Bunea, Marten Wegkamp, Amanda C Poholek, Alok V Joglekar, Robert A Lafyatis, Jishnu Das
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains. Nature methods (2024)
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Paul M Zdinak, Kun He, Xin Bing, Florentina Bunea, Marten Wegkamp, Amanda C Poholek, Alok V Joglekar, Robert A Lafyatis, Jishnu Das
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains. Nature methods 21 (5) (2024)
Yang Li, Shachi P Vyas, Isha Mehta, Nariaki Asada, Ipsita Dey, Tiffany C Taylor, Rami Bechara, Nilesh Amatya, Felix E Y Aggor, Bianca M Coleman, De-Dong Li, Kenta Yamamoto, Ogechukwu Ezenwa, Yeque Sun, Esta Sterneck, Charles Joel McManus, Ulf Panzer, Partha S Biswas, Ram Savan, Jishnu Das, Sarah L Gaffen
The RNA binding protein Arid5a drives IL-17-dependent autoantibody-induced glomerulonephritis. The Journal of experimental medicine 221 (9) (2024)
Niranjana Natarajan, Jonathan Florentin, Ebin Johny, Hanxi Xiao, Scott Patrick O'Neil, Liqun Lei, Jixing Shen, Lee Ohayon, Aaron R Johnson, Krithika Rao, Xiaoyun Li, Yanwu Zhao, Yingze Zhang, Sina Tavakoli, Sruti Shiva, Jishnu Das, Partha Dutta
Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis. Nature communications 15 (1) (2024)
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Paul M Zdinak, Kun He, Xin Bing, Florentina Bunea, Marten Wegkamp, Amanda C Poholek, Alok V Joglekar, Robert A Lafyatis, Jishnu Das
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains. Nature methods 21 (5) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Paul M Zdinak, Kun He, Xin Bing, Florentina Bunea, Marten Wegkamp, Amanda C Poholek, Alok V Joglekar, Robert A Lafyatis, Jishnu Das
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains. Nature methods 21 (5) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Niranjana Natarajan, Jonathan Florentin, Ebin Johny, Hanxi Xiao, Scott Patrick O'Neil, Liqun Lei, Jixing Shen, Lee Ohayon, Aaron R Johnson, Krithika Rao, Xiaoyun Li, Yanwu Zhao, Yingze Zhang, Sina Tavakoli, Sruti Shiva, Jishnu Das, Partha Dutta
Aberrant mitochondrial DNA synthesis in macrophages exacerbates inflammation and atherosclerosis. Nature communications 15 (1) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science 4 (3) (2024)
Daniel Osorio Hurtado, Anna Capasso, S Gail Eckhardt, Uma Giri, Alexander Somma, Todd M Pitts, Christopher H Lieu, Wells A Messersmith, Stacey M Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S Stephen Yi, Marieke Lydia Kuijjer
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nature computational science (2024)
Anushka Saha, Trirupa Chakraborty, Javad Rahimikollu, Hanxi Xiao, Lorena B Pereira de Oliveira, Timothy W Hand, Sukwan Handali, William Evan Secor, Lucia Alves de Oliveira Fraga, Jessica K Fairley, Jishnu Das, Aniruddh Sarkar
Deep humoral profiling coupled to interpretable machine learning unveils diagnostic markers and pathophysiology of schistosomiasis. Science translational medicine 16 (765) (2024)
Hanxi Xiao, Aaron Rosen, Prabal Chhibbar, Lenny Moise, Jishnu Das
From bench to bedside via bytes: Multi-omic immunoprofiling and integration using machine learning and network approaches. Human vaccines & immunotherapeutics 19 (3) (2023)
Jacob S Berkowitz, Tracy Tabib, Hanxi Xiao, Gabrielle M Sadej, Zsuzsanna H McMahan, Patrizia Fuschiotti, Robert A Lafyatis, Jishnu Das
Cell-type-specific biomarkers of systemic sclerosis disease severity capture cell-intrinsic and cell-extrinsic circuits. Arthritis & rheumatology (Hoboken, N.J.) (2023)
Hanxi Xiao, Aaron Rosen, Prabal Chhibbar, Lenny Moise, Jishnu Das
From bench to bedside via bytes: Multi-omic immunoprofiling and integration using machine learning and network approaches. Human vaccines & immunotherapeutics 19 (3) (2023)
Chelseá B Johnson-Hence, Kathyayini P Gopalakrishna, Darren Bodkin, Kara E Coffey, Ansen H P Burr, Syed A Rahman, Ali T Rai, Darryl A Abbott, Yelissa A Sosa, Justin T Tometich, Jishnu Das, Timothy W Hand
Stability and heterogeneity in the antimicrobiota reactivity of human milk-derived immunoglobulin A. The Journal of experimental medicine 220 (8) (2023)
Jacob S Berkowitz, Tracy Tabib, Hanxi Xiao, Gabrielle M Sadej, Zsuzsanna H McMahan, Patrizia Fuschiotti, Robert A Lafyatis, Jishnu Das
Cell-type-specific biomarkers of systemic sclerosis disease severity capture cell-intrinsic and cell-extrinsic circuits. Arthritis & rheumatology (Hoboken, N.J.) (2023)
Hanxi Xiao, Aaron Rosen, Prabal Chhibbar, Lenny Moise, Jishnu Das
From bench to bedside via bytes: Multi-omic immunoprofiling and integration using machine learning and network approaches. Human vaccines & immunotherapeutics 19 (3) (2023)
Chelse B Johnson-Hence, Kathyayini P Gopalakrishna, Darren Bodkin, Kara E Coffey, Ansen H P Burr, Syed Rahman, Ali T Rai, Darryl A Abbott, Yelissa A Sosa, Justin T Tometich, Jishnu Das, Timothy W Hand
Stability and heterogeneity in the anti-microbiota reactivity of human milk-derived Immunoglobulin A. bioRxiv : the preprint server for biology (2023)
Hanxi Xiao, Aaron Rosen, Prabal Chhibbar, Lenny Moise, Jishnu Das
From bench to bedside via bytes: Multi-omic immunoprofiling and integration using machine learning and network approaches. Human vaccines & immunotherapeutics 19 (3) (2023)
Jacob S Berkowitz, Tracy Tabib, Hanxi Xiao, Gabrielle M Sadej, Zsuzsanna H McMahan, Patrizia Fuschiotti, Robert A Lafyatis, Jishnu Das
Cell-type-specific biomarkers of systemic sclerosis disease severity capture cell-intrinsic and cell-extrinsic circuits. Arthritis & rheumatology (Hoboken, N.J.) (2023)
Stephanie Grebinoski, Qianxia Zhang, Anthony R Cillo, Sasikanth Manne, Hanxi Xiao, Erin A Brunazzi, Tracy Tabib, Carly Cardello, Christine G Lian, George F Murphy, Robert Lafyatis, E John Wherry, Jishnu Das, Creg J Workman, Dario A A Vignali
Autoreactive CD8 + T cells are restrained by an exhaustion-like program that is maintained by LAG3. Nature immunology 23 (6) (2022)
Roberth Anthony Rojas Chávez, Mohammad Fili, Changze Han, Syed A Rahman, Isaiah G L Bicar, Guiping Hu, Jishnu Das, Grant D Brown, Hillel Haim
Patterns of Volatility Across the Spike Protein Accurately Predict the Emergence of Mutations within SARS-CoV-2 Lineages. bioRxiv : the preprint server for biology (2022)
Junru Wu, Anthony Cyr, Danielle S Gruen, Tyler C Lovelace, Panayiotis V Benos, Jishnu Das, Upendra K Kar, Tianmeng Chen, Francis X Guyette, Mark H Yazer, Brian J Daley, Richard S Miller, Brian G Harbrecht, Jeffrey A Claridge, Herb A Phelan, Brian S Zuckerbraun, Matthew D Neal, Pär I Johansson, Jakob Stensballe, Rami A Namas, Yoram Vodovotz, Jason L Sperry, Timothy R Billiar, null null
Lipidomic signatures align with inflammatory patterns and outcomes in critical illness. Nature communications 13 (1) (2022)
Xu Hua, Yongsheng Li, Sairahul R Pentaparthi, Daniel J McGrail, Raymond Zou, Li Guo, Aditya Shrawat, Kara M Cirillo, Qing Li, Akshay V Bhat, Min Xu, Dan Qi, Ashok Singh, Francis McGrath, Steven B Andrews, Kyaw Lwin Aung, Jishnu Das, Yunyun Zhou, Alessia Lodi, Gordon B Mills, S Gail Eckhardt, Marc L Mendillo, Stefano Tiziani, Erxi Wu, Jason H Huang, Nidhi Sahni, S Stephen Yi
Landscape of microRNA regulatory network architecture and functional rerouting in cancer. Cancer research (2022)
Todd J Suscovich, Jonathan K Fallon, Jishnu Das, Allison R Demas, Jonathan Crain, Caitlyn H Linde, Ashlin R Michell, Harini Natarajan, Claudia P Arevalo, Thomas Broge, Thomas Linnekin, Viraj Kulkarni, Richard Lu, Matthew D Slein, Corinne Luedemann, Meghan Marquette, Sandra March, Joshua A Weiner, Scott Gregory, Margherita Coccia, Yevel Flores-Garcia, Fidel Zavala, Margaret E Ackerman, Elke S Bergmann-Leitner, Jenny Hendriks, Jerald Sadoff, Sheetij Dutta, Sangeeta N Bhatia, Douglas A Lauffenburger, Erik Jongert, Ulrike Wille-Reece, Galit Alter
Mapping functional humoral correlates of protection against malaria challenge following RTS,S/AS01 vaccination. Science translational medicine 12 (553) (2021)
Jishnu Das, Anush Devadhasan, Caitlyn H Linde, Tom Broge, Jessica Sassic, Max Mangano, Sean O'Keefe, Todd J Suscovich, Hendrik Streeck, Alivelu Irrinki, Christopher W Pohlmeyer, Gundula Min-Oo, Shu Lin, Joshua A Weiner, Thomas Cihlar, Margaret E Ackerman, Boris Julg, Steven G Deeks, Douglas A Lauffenburger, Galit Alter
Mining for humoral correlates of HIV control and latent reservoir size. PLoS pathogens 16 (10) (2020)
Sergi Clotet-Freixas, Caitríona M McEvoy, Ihor Batruch, Chiara Pastrello, Max Kotlyar, Julie Anh Dung Van, Madhurangi Arambewela, Alex Boshart, Sofia Farkona, Yun Niu, Yanhong Li, Olusegun Famure, Andrea Bozovic, Vathany Kulasingam, Peixuen Chen, S Joseph Kim, Emilie Chan, Sajad Moshkelgosha, Syed Ashiqur Rahman, Jishnu Das, Tereza Martinu, Stephen Juvet, Igor Jurisica, Andrzej Chruscinski, Rohan John, Ana Konvalinka
Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study. Journal of the American Society of Nephrology : JASN 31 (11) (2020)
Julie Boucau, Jishnu Das, Neelambari Joshi, Sylvie Le Gall
Latency reversal agents modulate HIV antigen processing and presentation to CD8 T cells. PLoS pathogens 16 (3) (2020)
Robert Fragoza, Jishnu Das, Shayne D Wierbowski, Jin Liang, Tina N Tran, Siqi Liang, Juan F Beltran, Christen A Rivera-Erick, Kaixiong Ye, Jean-Philippe Pellois, Li Yao, Matthew Mort, Peter D Stenson, David N Cooper, Xiaomu Wei, Alon Keinan, John C Schimenti, Andrew G Clark, Haiyuan Yu
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations. Nature communications 10 (1) (2019)
Shakti Singh, Eric Gustavo Ramirez-Salazar, Rami Doueiri, Antonio Valentin, Margherita Rosati, Xintao Hu, Brandon F Keele, Xiaoying X Shen, Georgia D Tomaras, Guido Ferrari, Celia C LaBranche, David C Montefiori, Jishnu Das, Galit Alter, Hung V Trinh, Christopher Hamlin, Mangala Rao, Frances Dayton, Jenifer Bear, Bhabadeb Chowdhury, Candido Alicea, Jeffrey D Lifson, Kate E Broderick, Niranjan Y Sardesai, Sandra J Sivananthan, Christopher B Fox, Steven G Reed, David J Venzon, Vanessa M Hirsch, George N Pavlakis, Barbara K Felber
Control of Heterologous Simian Immunodeficiency Virus SIVsmE660 Infection by DNA and Protein Coimmunization Regimens Combined with Different Toll-Like-Receptor-4-Based Adjuvants in Macaques. Journal of virology 92 (15) (2018)
Leia K Miller-Novak, Jishnu Das, Thomas A Musich, Thorsten Demberg, Joshua A Weiner, David J Venzon, Venkatramanan Mohanram, Diego A Vargas-Inchaustegui, Iskra Tuero, Margaret E Ackerman, Galit Alter, Marjorie Robert-Guroff
Analysis of Complement-Mediated Lysis of Simian Immunodeficiency Virus (SIV) and SIV-Infected Cells Reveals Sex Differences in Vaccine-Induced Immune Responses in Rhesus Macaques. Journal of virology 92 (19) (2018)
Margaret E Ackerman, Jishnu Das, Srivamshi Pittala, Thomas Broge, Caitlyn Linde, Todd J Suscovich, Eric P Brown, Todd Bradley, Harini Natarajan, Shu Lin, Jessica K Sassic, Sean O'Keefe, Nickita Mehta, Derrick Goodman, Magdalena Sips, Joshua A Weiner, Georgia D Tomaras, Barton F Haynes, Douglas A Lauffenburger, Chris Bailey-Kellogg, Mario Roederer, Galit Alter
Route of immunization defines multiple mechanisms of vaccine-mediated protection against SIV. Nature medicine 24 (10) (2018)
Yasmina Serroukh, Chunyan Gu-Trantien, Baharak Hooshiar Kashani, Matthieu Defrance, Thien-Phong Vu Manh, Abdulkader Azouz, Aurélie Detavernier, Alice Hoyois, Jishnu Das, Martin Bizet, Emeline Pollet, Tressy Tabbuso, Emilie Calonne, Klaas van Gisbergen, Marc Dalod, François Fuks, Stanislas Goriely, Arnaud Marchant
The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes. eLife 7 (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jishnu Das