Thomas O Metz

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 72

Top Venues

Metabolites

Journal of chemical information and modeling

Gut microbes

Analytical chemistry

Pacific Northwest National Laboratory

University of South Carolina (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Pacific Northwest National Laboratory

United States

Staff Scientist / Metabolomics Team Lead :: Integrative Omics

Education History

University of South Carolina

United States

PHD :: Chemistry and Biochemistry

San Jose State University

United States

BSC :: Chemistry

Frostburg State University

United States

BSC :: Biology

Publications

Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott James Price, Stefano Papazian, Katherine E Manz, Delia Castilla-Fernández, John A Bowden, Vladimir Nikiforov, Arthur David, Vincent Bessonneau, Bashar Amer, Suresh Seethapathy, Xin Hu, Elizabeth Z Lin, Akrem Jbebli, Brooklynn R McNeil, Dinesh Kumar Barupal, Marina Cerasa, Hongyu Xie, Vrinda Kalia, Renu Nandakumar, Randolph Reyes Singh, Zhenyu Tian, Peng Gao, Yujia Zhao, Jean Froment, Pawel Rostkowski, Saurabh Dubey, Kateřina Coufalíková, Hana Seličová, Helge Hecht, Sheng Liu, Hanisha H Udhani, Sophie Restituito, Kam-Meng Tchou-Wong, Kun Lu, Jonathan W Martin, Benedikt Warth, Krystal J Godri Pollitt, Jana Klánová, Oliver Fiehn, Thomas O Metz, Kurt D Pennell, Dean P Jones, Gary W Miller
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. Environmental science & technology (2024)
Hani Habra, Jennifer L Meijer, Tong Shen, Oliver Fiehn, David A Gaul, Facundo M Fernández, Kaitlin R Rempfert, Thomas O Metz, Karen E Peterson, Charles R Evans, Alla Karnovsky
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. Metabolites 14 (2) (2024)
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Danielle Westhoff Smith, Larissa B Thackray, Qing Tan, Amy C Sims, Vineet D Menachery, Alexandra Schaefer, Timothy P Sheahan, Adam S Cockrell, Kelly G Stratton, Bobbie-Jo M Webb-Robertson, Jennifer E Kyle, Kristin E Burnum-Johnson, Young-Mo Kim, Carrie D Nicora, Zuleyma Peralta, Alhaji U N'jai, Foday Sahr, Harm van Bakel, Michael S Diamond, Ralph S Baric, Thomas O Metz, Richard D Smith, Yoshihiro Kawaoka, Katrina M Waters
A compendium of multi-omics data illuminating host responses to lethal human virus infections. Scientific data 11 (1) (2024)
Adam L Hollerbach, Vivian S Lin, Helen S C Lazzarin, Robert G Ewing, Thomas O Metz, Kabrena E Rodda
Elucidating the Gas-Phase Behavior of Nitazene Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry. Journal of the American Society for Mass Spectrometry 35 (7) (2024)
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Danielle Westhoff Smith, Larissa B Thackray, Qing Tan, Amy C Sims, Vineet D Menachery, Alexandra Schaefer, Timothy P Sheahan, Adam S Cockrell, Kelly G Stratton, Bobbie-Jo M Webb-Robertson, Jennifer E Kyle, Kristin E Burnum-Johnson, Young-Mo Kim, Carrie D Nicora, Zuleyma Peralta, Alhaji U N'jai, Foday Sahr, Harm van Bakel, Michael S Diamond, Ralph S Baric, Thomas O Metz, Richard D Smith, Yoshihiro Kawaoka, Katrina M Waters
A compendium of multi-omics data illuminating host responses to lethal human virus infections. Scientific data 11 (1) (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott James Price, Stefano Papazian, Katherine E Manz, Delia Castilla-Fernández, John A Bowden, Vladimir Nikiforov, Arthur David, Vincent Bessonneau, Bashar Amer, Suresh Seethapathy, Xin Hu, Elizabeth Z Lin, Akrem Jbebli, Brooklynn R McNeil, Dinesh Kumar Barupal, Marina Cerasa, Hongyu Xie, Vrinda Kalia, Renu Nandakumar, Randolph Reyes Singh, Zhenyu Tian, Peng Gao, Yujia Zhao, Jean Froment, Pawel Rostkowski, Saurabh Dubey, Kateřina Coufalíková, Hana Seličová, Helge Hecht, Sheng Liu, Hanisha H Udhani, Sophie Restituito, Kam-Meng Tchou-Wong, Kun Lu, Jonathan W Martin, Benedikt Warth, Krystal J Godri Pollitt, Jana Klánová, Oliver Fiehn, Thomas O Metz, Kurt D Pennell, Dean P Jones, Gary W Miller
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. Environmental science & technology 58 (29) (2024)
Adam L Hollerbach, Vivian S Lin, Helen S C Lazzarin, Robert G Ewing, Thomas O Metz, Kabrena E Rodda
Elucidating the Gas-Phase Behavior of Nitazene Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2024)
Yem J Alharithi, Elysse A Phillips, Tim D Wilson, Sneha P Couvillion, Carrie D Nicora, Priscila Darakjian, Shauna Rakshe, Suzanne S Fei, Brittany Counts, Thomas O Metz, Robert Searles, Sushil Kumar, Alina Maloyan
Metabolomic and transcriptomic remodeling of bone marrow myeloid cells in response to maternal obesity. bioRxiv : the preprint server for biology (2024)
Thomas O Metz, Christine H Chang, Vasuk Gautam, Afia Anjum, Siyang Tian, Fei Wang, Sean M Colby, Jamie R Nunez, Madison R Blumer, Arthur S Edison, Oliver Fiehn, Dean P Jones, Shuzhao Li, Edward T Morgan, Gary J Patti, Dylan H Ross, Madelyn R Shapiro, Antony J Williams, David Scott Wishart
Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies. bioRxiv : the preprint server for biology (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Hani Habra, Jennifer L Meijer, Tong Shen, Oliver Fiehn, David A Gaul, Facundo M Fernández, Kaitlin R Rempfert, Thomas O Metz, Karen E Peterson, Charles R Evans, Alla Karnovsky
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. Metabolites 14 (2) (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Yem J Alharithi, Elysse A Phillips, Tim D Wilson, Sneha P Couvillion, Carrie D Nicora, Priscila Darakjian, Shauna Rakshe, Suzanne S Fei, Brittany Counts, Thomas O Metz, Robert Searles, Sushil Kumar, Alina Maloyan
Metabolomic and transcriptomic remodeling of bone marrow myeloid cells in response to maternal obesity. bioRxiv : the preprint server for biology (2024)
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Danielle Westhoff Smith, Larissa B Thackray, Qing Tan, Amy C Sims, Vineet D Menachery, Alexandra Schaefer, Timothy P Sheahan, Adam S Cockrell, Kelly G Stratton, Bobbie-Jo M Webb-Robertson, Jennifer E Kyle, Kristin E Burnum-Johnson, Young-Mo Kim, Carrie D Nicora, Zuleyma Peralta, Alhaji U N'jai, Foday Sahr, Harm van Bakel, Michael S Diamond, Ralph S Baric, Thomas O Metz, Richard D Smith, Yoshihiro Kawaoka, Katrina M Waters
A compendium of multi-omics data illuminating host responses to lethal human virus infections. Scientific data 11 (1) (2024)
Hani Habra, Jennifer L Meijer, Tong Shen, Oliver Fiehn, David A Gaul, Facundo M Fernández, Kaitlin R Rempfert, Thomas O Metz, Karen E Peterson, Charles R Evans, Alla Karnovsky
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. Metabolites 14 (2) (2024)
Marjolein T Oostrom, Sean M Colby, Thomas O Metz
DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. Journal of chemical information and modeling (2024)
Marjolein T Oostrom, Sean M Colby, Thomas O Metz
DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. Journal of chemical information and modeling 64 (5) (2024)
Adam L Hollerbach, Helen S C Lazzarin, Vivian S Lin, Katherine J Schultz, Adam P Huntley, Peter B Armentrout, Thomas O Metz, Robert G Ewing
Identification of Unique Fragmentation Patterns of Fentanyl Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry. Journal of the American Society for Mass Spectrometry 35 (4) (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Adam L Hollerbach, Helen S C Lazzarin, Vivian S Lin, Katherine J Schultz, Adam P Huntley, Peter B Armentrout, Thomas O Metz, Robert G Ewing
Identification of Unique Fragmentation Patterns of Fentanyl Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry. Journal of the American Society for Mass Spectrometry 35 (4) (2024)
Thomas O Metz, Christine H Chang, Vasuk Gautam, Afia Anjum, Siyang Tian, Fei Wang, Sean M Colby, Jamie R Nunez, Madison R Blumer, Arthur S Edison, Oliver Fiehn, Dean P Jones, Shuzhao Li, Edward T Morgan, Gary J Patti, Dylan H Ross, Madelyn R Shapiro, Antony J Williams, David Scott Wishart
Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies. bioRxiv : the preprint server for biology (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott James Price, Stefano Papazian, Katherine E Manz, Delia Castilla-Fernández, John A Bowden, Vladimir Nikiforov, Arthur David, Vincent Bessonneau, Bashar Amer, Suresh Seethapathy, Xin Hu, Elizabeth Z Lin, Akrem Jbebli, Brooklynn R McNeil, Dinesh Kumar Barupal, Marina Cerasa, Hongyu Xie, Vrinda Kalia, Renu Nandakumar, Randolph Reyes Singh, Zhenyu Tian, Peng Gao, Yujia Zhao, Jean Froment, Pawel Rostkowski, Saurabh Dubey, Kateřina Coufalíková, Hana Seličová, Helge Hecht, Sheng Liu, Hanisha H Udhani, Sophie Restituito, Kam-Meng Tchou-Wong, Kun Lu, Jonathan W Martin, Benedikt Warth, Krystal J Godri Pollitt, Jana Klánová, Oliver Fiehn, Thomas O Metz, Kurt D Pennell, Dean P Jones, Gary W Miller
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. Environmental science & technology 58 (29) (2024)
Yunjia Lai, Jeremy P Koelmel, Douglas I Walker, Elliott James Price, Stefano Papazian, Katherine E Manz, Delia Castilla-Fernández, John A Bowden, Vladimir Nikiforov, Arthur David, Vincent Bessonneau, Bashar Amer, Suresh Seethapathy, Xin Hu, Elizabeth Z Lin, Akrem Jbebli, Brooklynn R McNeil, Dinesh Kumar Barupal, Marina Cerasa, Hongyu Xie, Vrinda Kalia, Renu Nandakumar, Randolph Reyes Singh, Zhenyu Tian, Peng Gao, Yujia Zhao, Jean Froment, Pawel Rostkowski, Saurabh Dubey, Kateřina Coufalíková, Hana Seličová, Helge Hecht, Sheng Liu, Hanisha H Udhani, Sophie Restituito, Kam-Meng Tchou-Wong, Kun Lu, Jonathan W Martin, Benedikt Warth, Krystal J Godri Pollitt, Jana Klánová, Oliver Fiehn, Thomas O Metz, Kurt D Pennell, Dean P Jones, Gary W Miller
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. Environmental science & technology 58 (29) (2024)
Adam L Hollerbach, Helen S C Lazzarin, Vivian S Lin, Katherine J Schultz, Adam P Huntley, Peter B Armentrout, Thomas O Metz, Robert G Ewing
Identification of Unique Fragmentation Patterns of Fentanyl Analog Protomers Using Structures for Lossless Ion Manipulations Ion Mobility-Orbitrap Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2024)
Hani Habra, Jennifer L Meijer, Tong Shen, Oliver Fiehn, David A Gaul, Facundo M Fernández, Kaitlin R Rempfert, Thomas O Metz, Karen E Peterson, Charles R Evans, Alla Karnovsky
metabCombiner 2.0: Disparate Multi-Dataset Feature Alignment for LC-MS Metabolomics. Metabolites 14 (2) (2024)
Paige E Jamieson, Eli B Smart, John A Bouranis, Jaewoo Choi, Robert E Danczak, Carmen P Wong, Ines L Paraiso, Claudia S Maier, Emily Ho, Thomas J Sharpton, Thomas O Metz, Ryan D Bradley, Jan Frederick Stevens
Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults. Gut microbes 16 (1) (2024)
Amie J Eisfeld, Lindsey N Anderson, Shufang Fan, Kevin B Walters, Peter J Halfmann, Danielle Westhoff Smith, Larissa B Thackray, Qing Tan, Amy C Sims, Vineet D Menachery, Alexandra Schaefer, Timothy P Sheahan, Adam S Cockrell, Kelly G Stratton, Bobbie-Jo M Webb-Robertson, Jennifer E Kyle, Kristin E Burnum-Johnson, Young-Mo Kim, Carrie D Nicora, Zuleyma Peralta, Alhaji U N'jai, Foday Sahr, Harm van Bakel, Michael S Diamond, Ralph S Baric, Thomas O Metz, Richard D Smith, Yoshihiro Kawaoka, Katrina M Waters
A compendium of multi-omics data illuminating host responses to lethal human virus infections. Scientific data 11 (1) (2024)
Marjolein T Oostrom, Sean M Colby, Thomas O Metz
DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. Journal of chemical information and modeling 64 (5) (2024)
Marjolein T Oostrom, Sean M Colby, Thomas O Metz
DEIMoS GUI: An Open-Source User Interface for a High-Dimensional Mass Spectrometry Data Processing Tool. Journal of chemical information and modeling 64 (5) (2024)
Felicity F Nielson, Bill Kay, Stephen J Young, Sean M Colby, Ryan S Renslow, Thomas O Metz
Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Metabolites 13 (1) (2023)
Lucas C Webber, Lindsey N Anderson, Ines L Paraiso, Thomas O Metz, Ryan Bradley, Jan F Stevens, Aaron T Wright
Affinity- and activity-based probes synthesized from structurally diverse hops-derived xanthohumol flavonoids reveal highly varied protein profiling in Escherichia coli . RSC advances 13 (42) (2023)
Milene C Vallejo, Soumyadeep Sarkar, Emily C Elliott, Hayden R Henry, Samantha M Powell, Ivo Diaz Ludovico, Youngki You, Fei Huang, Samuel H Payne, Sasanka Ramanadham, Emily K Sims, Thomas O Metz, Raghavendra G Mirmira, Ernesto S Nakayasu
A proteomic meta-analysis refinement of plasma extracellular vesicles. Scientific data 10 (1) (2023)
Felicity F Nielson, Bill Kay, Stephen J Young, Sean M Colby, Ryan S Renslow, Thomas O Metz
Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Metabolites 13 (1) (2023)
Adam L Hollerbach, Helen S C Lazzarin, Vanessa Meras, Randolph V Norheim, Adam P Huntley, Gordon A Anderson, Thomas O Metz, Robert G Ewing, Richard D Smith
A Dual-Gated Structures for Lossless Ion Manipulations-Ion Mobility Orbitrap Mass Spectrometry Platform for Combined Ultra-High-Resolution Molecular Analysis. Analytical chemistry (2023)
Felicity F Nielson, Bill Kay, Stephen J Young, Sean M Colby, Ryan S Renslow, Thomas O Metz
Correction: Nielson et al. Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Metabolites 2023, 13 , 105. Metabolites 13 (11) (2023)
Felicity F Nielson, Bill Kay, Stephen J Young, Sean M Colby, Ryan S Renslow, Thomas O Metz
Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics. Metabolites 13 (1) (2023)
Jennifer E Kyle, Lisa M Bramer, Daniel Claborne, Kelly G Stratton, Kent J Bloodsworth, Justin G Teeguarden, Shobhan Gaddameedhi, Thomas O Metz, Hans P A Van Dongen
Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk. Nature and science of sleep 14 (2022)
Soumyadeep Sarkar, John T Melchior, Hayden R Henry, Farooq Syed, Raghavendra G Mirmira, Ernesto S Nakayasu, Thomas O Metz
GDF15: a potential therapeutic target for type 1 diabetes. Expert opinion on therapeutic targets 26 (1) (2022)
Taniya Roy Chowdhury, Lisa M Bramer, Joseph Brown, Young-Mo Kim, Erika Zink, Thomas O Metz, Lee Ann McCue, Heida L Diefenderfer, Vanessa Bailey
Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland. Microorganisms 10 (8) (2022)
Bobbie-Jo M Webb-Robertson, Ernesto S Nakayasu, Brigitte I Frohnert, Lisa M Bramer, Sarah M Akers, Jill M Norris, Kendra Vehik, Anette-Gabriele Ziegler, Thomas O Metz, Stephen S Rich, Marian J Rewers
Integration of Infant Metabolite, Genetic, and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by Age 6 Years. The Journal of clinical endocrinology and metabolism 107 (8) (2022)
Scotland E Farley, Jennifer E Kyle, Hans C Leier, Lisa M Bramer, Jules B Weinstein, Timothy A Bates, Joon-Yong Lee, Thomas O Metz, Carsten Schultz, Fikadu G Tafesse
A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants. Nature communications 13 (1) (2022)
Justin P Shaffer, Louis-Felix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight, null null
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity. Nature microbiology 7 (12) (2022)
Sean M Colby, Christine H Chang, Jessica L Bade, Jamie R Nunez, Madison R Blumer, Daniel J Orton, Kent J Bloodsworth, Ernesto S Nakayasu, Richard D Smith, Helen S C Lazzarin, Ryan R Renslow, Thomas O Metz
DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data. Analytical chemistry 94 (16) (2022)
Jamie R Nuñez, Monee Mcgrady, Yasemin Yesiltepe, Ryan R Renslow, Thomas O Metz
Correction to "Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets". Journal of chemical information and modeling 61 (5) (2021)
Jennifer E Kyle, Kelly G Stratton, Erika M Zink, Young-Mo Kim, Kent J Bloodsworth, Matthew E Monroe, null null, Katrina M Waters, Bobbie-Jo M Webb-Robertson, David M Koeller, Thomas O Metz
A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases. Scientific data 8 (1) (2021)
Blake O Langley, Jennifer Joan Ryan, Douglas Hanes, John Phipps, Emily Stack, Thomas O Metz, Jan Frederick Stevens, Ryan D Bradley
Xanthohumol Microbiome and Signature in Healthy Adults (the XMaS Trial): Safety and Tolerability Results of a Phase I Triple-Masked, Placebo-Controlled Clinical Trial. Molecular nutrition & food research 65 (8) (2021)
Robert A Quinn, Kehau A Hagiwara, Ken H Liu, Maryam Goudarzi, Wimal Pathmasiri, Lloyd W Sumner, Thomas O Metz
Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research. mSystems 6 (5) (2021)
Robert A Quinn, Kehau A Hagiwara, Ken H Liu, Maryam Goudarzi, Wimal Pathmasiri, Lloyd W Sumner, Thomas O Metz
Erratum for Quinn et al., "Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research". mSystems 6 (5) (2021)
Ernesto S Nakayasu, Marina A Gritsenko, Paul D Piehowski, Yuqian Gao, Daniel J Orton, Athena A Schepmoes, Thomas L Fillmore, Brigitte I Frohnert, Marian Rewers, Jeffrey P Krischer, Charles Ansong, Astrid M Suchy-Dicey, Carmella Evans-Molina, Wei-Jun Qian, Bobbie-Jo M Webb-Robertson, Thomas O Metz
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation. Nature protocols 16 (8) (2021)
Madison R Blumer, Christine H Chang, Evangelina Brayfindley, Jamie R Nunez, Sean M Colby, Ryan R Renslow, Thomas O Metz
Mass Spectrometry Adduct Calculator. Journal of chemical information and modeling (2021)
Felicity F Nielson, Sean M Colby, Dennis G Thomas, Ryan R Renslow, Thomas O Metz
Exploring the Impacts of Conformer Selection Methods on Ion Mobility Collision Cross Section Predictions. Analytical chemistry 93 (8) (2021)
Ricardo Moreira Borges, Sean M Colby, Susanta Das, Arthur S Edison, Oliver Fiehn, Tobias Kind, Jesi Lee, Amy T Merrill, Kenneth M Merz, Thomas O Metz, Jamie R Nunez, Dean Joseph Tantillo, Lee-Ping Wang, Lee-Ping Wang, Ryan R Renslow
Quantum Chemistry Calculations for Metabolomics. Chemical reviews 121 (10) (2021)
Maikel Luis Colli, Mireia Ramos-Rodríguez, Ernesto S Nakayasu, Maria I Alvelos, Miguel Lopes, Jessica L E Hill, Jean-Valery Turatsinze, Alexandra Coomans de Brachène, Mark A Russell, Helena Raurell-Vila, Angela Castela, Jonàs Juan-Mateu, Bobbie-Jo M Webb-Robertson, Lars Krogvold, Knut Dahl-Jorgensen, Lorella Marselli, Piero Marchetti, Sarah J Richardson, Noel G Morgan, Thomas O Metz, Lorenzo Pasquali, Decio L Eizirik
An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells. Nature communications 11 (1) (2020)
Zehra Esra Ilhan, John K DiBaise, Sydney E Dautel, Nancy G Isern, Young-Mo Kim, David W Hoyt, Athena A Schepmoes, Heather M Brewer, Karl K Weitz, Thomas O Metz, Michael D Crowell, Dae-Wook Kang, Bruce E Rittmann, Rosa Krajmalnik-Brown
Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery. NPJ biofilms and microbiomes 6 (1) (2020)
Bernardo Blanco-Sánchez, Aurélie Clément, Sarah Josephine Stednitz, Jennifer Kyle, Judy L Peirce, Marcie McFadden, Jeremy Wegner, Jennifer B Phillips, Ellen F Macnamara, Yan Huang, David R Adams, Camilo Toro, William A Gahl, May Christine V Malicdan, Cynthia J Tifft, Erika M Zink, Kent J Bloodsworth, Kelly G Stratton, null null, David M Koeller, Thomas O Metz, Philip Washbourne, Monte Westerfield
yippee like 3 (ypel3) is a novel gene required for myelinating and perineurial glia development. PLoS genetics 16 (6) (2020)
Jamie R Nuñez, Monee Mcgrady, Yasemin Yesiltepe, Ryan R Renslow, Thomas O Metz
Chespa: Streamlining Expansive Chemical Space Evaluation of Molecular Sets. Journal of chemical information and modeling 60 (12) (2020)
Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Bryan A Stanfill, Sarah M Reehl, Ernesto S Nakayasu, Thomas O Metz, Brigitte I Frohnert, Jill M Norris, Randi K Johnson, Stephen S Rich, Marian J Rewers
Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers. Journal of diabetes 13 (2) (2020)
Hans C Leier, Jules B Weinstein, Jennifer E Kyle, Joon-Yong Lee, Lisa M Bramer, Kelly G Stratton, Douglas Kempthorne, Aaron R Navratil, Endale G Tafesse, Thorsten Hornemann, William B Messer, Edward A Dennis, Thomas O Metz, Eric Barklis, Fikadu G Tafesse
A global lipid map defines a network essential for Zika virus replication. Nature communications 11 (1) (2020)
Alexander A Aksenov, Ivan Laponogov, Zheng Zhang, Sophie L F Doran, Ilaria Belluomo, Dennis Veselkov, Wout Bittremieux, Louis-Felix Nothias, Mélissa Nothias-Esposito, Katherine N Maloney, Biswapriya B Misra, Alexey V Melnik, Aleksandr Smirnov, Xiuxia Du, Kenneth L Jones, Kathleen Dorrestein, Morgan Panitchpakdi, Madeleine Ernst, Justin Johan Jozias van der Hooft, Mabel Gonzalez, Chiara Carazzone, Adolfo Amézquita, Chris Callewaert, James T Morton, Robert A Quinn, Amina Bouslimani, Andrea Albarracín Orio, Daniel Petras, Andrea M Smania, Sneha P Couvillion, Meagan C Burnet, Carrie D Nicora, Erika M Zink, Thomas O Metz, Viatcheslav Artaev, Elizabeth Humston-Fulmer, Rachel Gregor, Michael M Meijler, Itzhak Mizrahi, Stav Eyal, Brooke Anderson, Rachel Dutton, Raphaël Lugan, Pauline Le Boulch, Yann Guitton, Stephanie Prevost, Audrey Poirier, Gaud Dervilly, Abdoulaye Zié Koné, Aaron Fait, Noga Sikron Persi, Chao Song, Kelem Gashu, Roxana Coras, Monica Guma, Julia Manasson, Jose U Scher, Dinesh Kumar Barupal, Saleh Alseekh, Alisdair Robert Fernie, Reza Mirnezami, Vasilis Vasiliou, Robin Schmid, Roman S Borisov, Larisa N Kulikova, Rob Knight, Mingxun Wang, George B Hanna, Pieter C Dorrestein, Kirill Veselkov
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. Nature biotechnology 39 (2) (2020)
Roza Wojcik, Gabe Nagy, Isaac K Attah, Ian K Webb, Sandilya V B Garimella, Karl K Weitz, Adam Hollerbach, Matthew E Monroe, Marshall R Ligare, Felicity F Nielson, Randolph V Norheim, Ryan R Renslow, Thomas O Metz, Helen S C Lazzarin, Richard D Smith
SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes. Analytical chemistry 91 (18) (2019)
Lisa M Bramer, Kelly G Stratton, Amanda M White, Ameila H Bleeker, Markus A Kobold, Katrina M Waters, Thomas O Metz, Karin D Rodland, Bobbie-Jo M Webb-Robertson
P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data. Journal of proteome research 18 (3) (2019)
Jamie R Nuñez, Sean M Colby, Dennis G Thomas, Malak M Tfaily, Nikola Tolić, Elin M Ulrich, Jon R Sobus, Thomas O Metz, Justin G Teeguarden, Ryan R Renslow
Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples. Journal of chemical information and modeling 59 (9) (2019)
Sean M Colby, Dennis G Thomas, Jamie R Nuñez, Douglas J Baxter, Kurt R Glaesemann, Joseph M Brown, Meg A Pirrung, Niranjan Govind, Justin G Teeguarden, Thomas O Metz, Ryan R Renslow
ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. Analytical chemistry 91 (7) (2019)
Jane D Fudyma, Jamee Lyon, Roya AminiTabrizi, Hans Gieschen, Rosalie K Chu, David W Hoyt, Jennifer E Kyle, Jason Toyoda, Nikola Tolic, Heino M Heyman, Nancy J Hess, Thomas O Metz, Malak M Tfaily
Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites. Plant direct 3 (11) (2019)
Ernesto S Nakayasu, Wei-Jun Qian, Carmella Evans-Molina, Raghavendra G Mirmira, Decio L Eizirik, Thomas O Metz
The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes. Expert review of proteomics 16 (7) (2019)
Morgan V Evans, Gordon J Getzinger, Jenna L Luek, Andrea J Hanson, Molly C McLaughlin, Jens Blotevogel, Susan A Welch, Carrie D Nicora, Samuel O Purvine, Chengdong Xu, David R Cole, Thomas H Darrah, David W Hoyt, Thomas O Metz, P Lee Ferguson, Mary S Lipton, Michael J Wilkins, Paula J Mouser
In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing. The ISME journal 13 (11) (2019)
Bobbie-Jo M Webb-Robertson, Kelly G Stratton, Jennifer E Kyle, Young-Mo Kim, Lisa M Bramer, Katrina M Waters, David M Koeller, Thomas O Metz
Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network. Analytical chemistry 92 (2) (2019)
Kristin E Burnum-Johnson, Jennifer E Kyle, Amie J Eisfeld, Cameron P Casey, Kelly G Stratton, Juan F Gonzalez, Fabien Habyarimana, Nicholas M Negretti, Amy C Sims, Sadhana Chauhan, Larissa B Thackray, Peter J Halfmann, Kevin B Walters, Young-Mo Kim, Erika M Zink, Carrie D Nicora, Karl K Weitz, Bobbie-Jo M Webb-Robertson, Ernesto S Nakayasu, Brian Ahmer, Michael E Konkel, Vladimir Motin, Ralph S Baric, Michael S Diamond, Yoshihiro Kawaoka, Katrina M Waters, Richard D Smith, Thomas O Metz
MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling. The Analyst 142 (3) (2018)
Bryan A Stanfill, Ernesto S Nakayasu, Lisa M Bramer, Allison M Thompson, Charles K Ansong, Therese R Clauss, Marina A Gritsenko, Matthew E Monroe, Ronald J Moore, Daniel J Orton, Paul D Piehowski, Athena A Schepmoes, Richard D Smith, Bobbie-Jo M Webb-Robertson, Thomas O Metz, null null
Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data. Molecular & cellular proteomics : MCP 17 (9) (2018)
Bryson C Gibbons, Thomas L Fillmore, Yuqian Gao, Ronald J Moore, Tao Liu, Ernesto S Nakayasu, Thomas O Metz, Samuel H Payne
Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards. Journal of proteome research 18 (2) (2018)

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Thomas O Metz