Patroklos Samaras

ORCID

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 13

Top Venues

Nature methods

Nature communications

Nature chemical biology

Science (New York, N.Y.)

Technical University Munich

Technical University Munich (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Technical University Munich Jul 01 2016

Germany

PhD Candidate :: Chair of Proteomics and Bioanalytics

Education History

Technical University Munich Jul 01 2016

Germany

PHD :: Chair of Proteomics and Bioanalytics

Aristotle University of Thessaloniki Faculty of Sciences Sep 01 2013

Greece

MSC :: Computer Science Department

Aristotle University of Thessaloniki Faculty of Sciences Sep 01 2008 - Mar 21 2013

Greece

BSC :: Computer Science Department

Publications

Maria Reinecke, Paul D Brear, Larsen Vornholz, Benedict-Tilmann Berger, Florian Seefried, Stephanie Wilhelm, Patroklos Samaras, Laszlo Gyenis, David William Litchfield, Guillaume Médard, Susanne Müller, Jürgen Ruland, Marko Hyvönen, Mathias Wilhelm, Bernhard Kuster
Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors. Nature chemical biology (2023)
Jana Zecha, Florian P Bayer, Svenja Wiechmann, Julia Woortman, Nicola Berner, Julian Müller, Annika Schneider, Karl Kramer, Mar Abril-Gil, Thomas A Hopf, Leonie Reichart, Lin Chen, Fynn M Hansen, Severin Lechner, Patroklos Samaras, Stephan Eckert, Ludwig Lautenbacher, Maria Reinecke, Firas Hamood, Polina Prokofeva, Larsen Vornholz, Chiara Falcomatà, Madeleine Dorsch, Ayla Schröder, Anton Venhuizen, Stephanie Wilhelm, Guillaume Médard, Gabriele Stoehr, Juergen Ruland, Barbara M Grüner, Dieter Saur, Maike Buchner, Benjamin Ruprecht, Hannes Hahne, Matthew The, Mathias Wilhelm, Bernhard Kuster
Decrypting drug actions and protein modifications by dose- and time-resolved proteomics. Science (New York, N.Y.) (2023)
Piero Giansanti, Patroklos Samaras, Yangyang Bian, Chen Meng, Andrea Coluccio, Martin Frejno, Hannah Jakubowsky, Sophie Dobiasch, Rashmi R Hazarika, Julia Woortman, Julia Calzada-Wack, Johannes Krumm, Sebastian Mueller, Chien-Yun Lee, Nicole Wimberger, Ludwig Lautenbacher, Zonera Hassan, Yun-Chien Chang, Chiara Falcomatà, Florian P Bayer, Stefanie Bärthel, Tobias K Schmidt, Roland Rad, Stephanie E Combs, Matthew The, Frank Johannes, Dieter Saur, Martin Hrabě de Angelis, Mathias Wilhelm, Günter Schneider, Bernhard Kuster
Mass spectrometry-based draft of the mouse proteome. Nature methods 19 (7) (2022)
Mathias Wilhelm, Daniel P Zolg, Michael Graber, Siegfried Gessulat, Tobias K Schmidt, Karsten Schnatbaum, Celina Tretter, Philipp Seifert, Niklas de Andrade Krätzig, Johannes Zerweck, Tobias Knaute, Eva Bräunlein, Patroklos Samaras, Ludwig Lautenbacher, Susan Klaeger, Holger Wenschuh, Roland Rad, Bernard Delanghe, Andreas Huhmer, Steven A Carr, Karl R Clauser, Angela M Krackhardt, Ulf Reimer, Bernhard Kuster
Author Correction: Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics. Nature communications 12 (1) (2021)
Javier Antonio Alfaro, Peggy Bohländer, Mingjie Dai, Mike Filius, Cecil J Howard, Xander F van Kooten, Shilo Ohayon, Adam Pomorski, Sonja Schmid, Aleksei Aksimentiev, Eric V Anslyn, Georges Bedran, Chan Cao, Mauro Chinappi, Etienne Coyaud, Cees Dekker, Gunnar Dittmar, Nicholas Drachman, Rienk Eelkema, David Goodlett, Sébastien Hentz, Umesh Kalathiya, Michael P Snyder, Ryan T Kelly, Zvi Kelman, Sung Hyun Kim, Bernhard Kuster, David Rodriguez-Larrea, Stuart Lindsay, Giovanni Maglia, Edward M Marcotte, John P Marino, Christophe D Masselon, Michael Mayer, Patroklos Samaras, Kumar Sarthak, Lusia Sepiashvili, Derek Stein, Meni Wanunu, Mathias Wilhelm, Peng Yin, Amit Meller, Chirlmin Joo
The emerging landscape of single-molecule protein sequencing technologies. Nature methods 18 (6) (2021)
Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Bjoern Andreas Gruening, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W Deutsch, Juan Antonio Vizcaino, Mingze Bai, Timo Sachsenberg, Lev I Levitsky, Yasset Perez Riverol
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications 12 (1) (2021)
Ludwig Lautenbacher, Patroklos Samaras, Julian Muller, Andreas Grafberger, Marwin Shraideh, Johannes Rank, Simon T Fuchs, Tobias K Schmidt, Matthew The, Christian Dallago, Holger Wittges, Burkhard Rost, Helmut Krcmar, Bernhard Kuster, Mathias Wilhelm
ProteomicsDB: toward a FAIR open-source resource for life-science research. Nucleic acids research (2021)
Mathias Wilhelm, Daniel P Zolg, Michael Graber, Siegfried Gessulat, Tobias K Schmidt, Karsten Schnatbaum, Celina Tretter, Philipp Seifert, Niklas de Andrade Krätzig, Johannes Zerweck, Tobias Knaute, Eva Bräunlein, Patroklos Samaras, Ludwig Lautenbacher, Susan Klaeger, Holger Wenschuh, Roland Rad, Bernard Delanghe, Andreas Huhmer, Steven A Carr, Karl R Clauser, Angela M Krackhardt, Ulf Reimer, Bernhard Kuster
Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics. Nature communications 12 (1) (2021)
Julia Mergner, Martin Frejno, Markus List, Michael Papacek, Xia Chen, Ajeet Chaudhary, Patroklos Samaras, Sandra Richter, Hiromasa Shikata, Maxim Messerer, Daniel Lang, Stefan Altmann, Philipp Cyprys, Daniel P Zolg, Toby Mathieson, Marcus Bantscheff, Rashmi R Hazarika, Tobias K Schmidt, Corinna Dawid, Andreas Dunkel, Thomas Hofmann, Stefanie Sprunck, Pascal Falter-Braun, Frank Johannes, Klaus F X Mayer, Gerd Jürgens, Mathias Wilhelm, Jan Baumbach, Erwin Grill, Kay Schneitz, Claus Schwechheimer, Bernhard Kuster
Mass-spectrometry-based draft of the Arabidopsis proteome. Nature 579 (7799) (2020)
Julia Mergner, Martin Frejno, Maxim Messerer, Daniel Lang, Patroklos Samaras, Mathias Wilhelm, Klaus F X Mayer, Claus Schwechheimer, Bernhard Kuster
Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. Scientific data 7 (1) (2020)
Anna Jarzab, Nils Kurzawa, Thomas Hopf, Matthias Moerch, Jana Zecha, Niels Leijten, Yangyang Bian, Eva Musiol, Melanie Maschberger, Gabriele Stoehr, Isabelle Becher, Charlotte Daly, Patroklos Samaras, Julia Mergner, Britta Spanier, Angel Angelov, Thilo Werner, Marcus Bantscheff, Mathias Wilhelm, Martin Klingenspor, Simone Lemeer, Wolfgang Liebl, Hannes Hahne, Mikhail M Savitski, Bernhard Kuster
Meltome atlas-thermal proteome stability across the tree of life. Nature methods 17 (5) (2020)
Martin Frejno, Chen Meng, Benjamin Ruprecht, Thomas Oellerich, Sebastian Scheich, Karin Kleigrewe, Enken Drecoll, Patroklos Samaras, Alexander Hogrebe, Dominic Helm, Julia Mergner, Jana Zecha, Stephanie Wilhelm, Mathias Wilhelm, Julia Dorn, Hans Michael Kvasnicka, Hubert Serve, Wilko Weichert, Bernhard Kuster
Proteome activity landscapes of tumor cell lines determine drug responses. Nature communications 11 (1) (2020)
Siegfried Gessulat, Tobias Schmidt, Daniel Paul Zolg, Patroklos Samaras, Karsten Schnatbaum, Johannes Zerweck, Tobias Knaute, Julia Rechenberger, Bernard Delanghe, Andreas Huhmer, Ulf Reimer, Hans-Christian Ehrlich, Stephan Aiche, Bernhard Kuster, Mathias Wilhelm
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning. Nature methods 16 (6) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Patroklos Samaras