Pierre-Luc Germain (P L Germain)

ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 24

Top Venues

eLife

PLoS computational biology

Nature communications

bioRxiv : the preprint server for biology

European School of Molecular Medicine & University of Milan (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

European School of Molecular Medicine & University of Milan

Italy

PHD

Publications

Mattia Privitera, Lukas M von Ziegler, Amalia Floriou-Servou, Sian N Duss, Runzhong Zhang, Rebecca Waag, Sebastian Leimbacher, Oliver Sturman, Fabienne K Roessler, Annelies Heylen, Yannick Vermeiren, Debby Van Dam, Peter Paul de Deyn, Pierre-Luc Germain, Johannes Bohacek
Noradrenaline release from the locus coeruleus shapes stress-induced hippocampal gene expression. eLife 12 (2024)
Felix Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D Robinson, Pierre-Luc Germain
On the identification of differentially-active transcription factors from ATAC-seq data. bioRxiv : the preprint server for biology (2024)
Mattia Privitera, Lukas M von Ziegler, Amalia Floriou-Servou, Sian N Duss, Runzhong Zhang, Rebecca Waag, Sebastian Leimbacher, Oliver Sturman, Fabienne K Roessler, Annelies Heylen, Yannick Vermeiren, Debby Van Dam, Peter Paul de Deyn, Pierre-Luc Germain, Johannes Bohacek
Noradrenaline release from the locus coeruleus shapes stress-induced hippocampal gene expression. eLife 12 (2024)
Mark D Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona
Ten simple rules for computational biologists collaborating with wet lab researchers. PLoS computational biology 20 (6) (2024)
Felix Gerbaldo, Emanuel Sonder, Vincent Fischer, Selina Frei, Jiayi Wang, Katharina Gapp, Mark D Robinson, Pierre-Luc Germain
On the identification of differentially-active transcription factors from ATAC-seq data. bioRxiv : the preprint server for biology (2024)
Mark D Robinson, Peiying Cai, Martin Emons, Reto Gerber, Pierre-Luc Germain, Samuel Gunz, Siyuan Luo, Giulia Moro, Emanuel Sonder, Anthony Sonrel, Jiayi Wang, David Wissel, Izaskun Mallona
Ten simple rules for computational biologists collaborating with wet lab researchers. PLoS computational biology 20 (6) (2024)
Mattia Privitera, Lukas M von Ziegler, Amalia Floriou-Servou, Sian N Duss, Runzhong Zhang, Rebecca Waag, Sebastian Leimbacher, Oliver Sturman, Fabienne K Roessler, Annelies Heylen, Yannick Vermeiren, Debby Van Dam, Peter Paul de Deyn, Pierre-Luc Germain, Johannes Bohacek
Noradrenaline release from the locus coeruleus shapes stress-induced hippocampal gene expression. eLife 12 (2024)
Vincent Fischer, Miriam Kretschmer, Pierre-Luc Germain, Jasmine Kaur, Sergio Mompart-Barrenechea, Pawel Pelczar, David Schürmann, Primo Schär, Katharina Gapp
Sperm chromatin accessibility's involvement in the intergenerational effects of stress hormone receptor activation. Translational psychiatry 13 (1) (2023)
Mahshid Gazorpak, Karina M Hugentobler, Dominique Paul, Pierre-Luc Germain, Miriam Kretschmer, Iryna Ivanova, Selina Frei, Kei Mathis, Remo Rudolf, Sergio Mompart Barrenechea, Vincent Fischer, Xiaohan Xue, Aleksandra L Ptaszek, Julian Holzinger, Mattia Privitera, Andreas Hierlemann, Onno C Meijer, Robert Konrat, Erick M Carreira, Johannes Bohacek, Katharina Gapp
Harnessing PROTAC technology to combat stress hormone receptor activation. Nature communications 14 (1) (2023)
Reetu Daswani, Carlotta Gilardi, Michael Soutschek, Prakruti Nanda, Kerstin Weiss, Silvia Bicker, Roberto Fiore, Christoph Dieterich, Pierre-Luc Germain, Jochen Winterer, Gerhard Schratt
MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice. eLife 11 (2022)
Lukas M von Ziegler, Amalia Floriou-Servou, Rebecca Waag, Rebecca R Das Gupta, Oliver Sturman, Katharina Gapp, Christina A Maat, Tobias Kockmann, Han-Yu Lin, Sian N Duss, Mattia Privitera, Laura C Hinte, Ferdinand von Meyenn, Hanns Ulrich Zeilhofer, Pierre-Luc Germain, Johannes Bohacek
Multiomic profiling of the acute stress response in the mouse hippocampus. Nature communications 13 (1) (2022)
Nicolò Caporale, Michelle Leemans, Lina Birgersson, Pierre-Luc Germain, Cristina Cheroni, Gábor Borbély, Elin Engdahl, Christian H Lindh, Raul Bardini Bressan, Francesca Cavallo, Nadav Even Chorev, Giuseppe Alessandro D'Agostino, Steven M Pollard, Marco Tullio Rigoli, Erika Tenderini, Alejandro Lopez Tobon, Sebastiano Trattaro, Flavia Troglio, Matteo Zanella, Åke Bergman, Pauliina Damdimopoulou, Maria Jönsson, Wieland Kiess, Efthymia Kitraki, Hannu Kiviranta, Eewa Nånberg, Mattias Öberg, Panu Rantakokko, Christina Rudén, Olle Söder, Carl-Gustaf Bornehag, Barbara A Demeneix, Jean-Baptiste Fini, Chris Gennings, Joëlle Rüegg, Joachim Sturve, Giuseppe Testa
From cohorts to molecules: Adverse impacts of endocrine disrupting mixtures. Science (New York, N.Y.) 375 (6582) (2022)
Michael Soutschek, Fridolin Gross, Gerhard Schratt, Pierre-Luc Germain
scanMiR: a biochemically based toolkit for versatile and efficient microRNA target prediction. Bioinformatics (Oxford, England) 38 (9) (2022)
Michael Soutschek, Tomás Germade, Pierre-Luc Germain, Gerhard Schratt
enrichMiR predicts functionally relevant microRNAs based on target collections. Nucleic acids research (2022)
Pierre-Luc Germain, Aaron Lun, Will Macnair, Mark D Robinson
Doublet identification in single-cell sequencing data using scDblFinder. F1000Research 10 (2021)
Pierre-Luc Germain, Aaron Lun, Carlos Garcia Meixide, Will Macnair, Mark D Robinson
Doublet identification in single-cell sequencing data using scDblFinder . F1000Research 10 (2021)
Barbora Salovska, Hongwen Zhu, Tejas Gandhi, Max Frank, Wenxue Li, George A Rosenberger, Chongde Wu, Pierre-Luc Germain, Hu Zhou, Zdenek Hodny, Lukas Reiter, Yansheng Liu
Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation. Molecular systems biology 16 (3) (2021)
David Colameo, Marek Rajman, Michael Soutschek, Silvia Bicker, Lukas von Ziegler, Johannes Bohacek, Jochen Winterer, Pierre-Luc Germain, Christoph Dieterich, Gerhard Schratt
Pervasive compartment-specific regulation of gene expression during homeostatic synaptic scaling. EMBO reports 22 (10) (2021)
Stefan Gerber, Gerhard Schratt, Pierre-Luc Germain
Streamlining differential exon and 3' UTR usage with diffUTR. BMC bioinformatics 22 (1) (2021)
Pierre-Luc Germain, Anthony Sonrel, Mark D Robinson
pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. Genome biology 21 (1) (2020)
Gretchen van Steenwyk, Katharina Gapp, Ali Jawaid, Pierre-Luc Germain, Francesca Manuella, Deepak Kumar Tanwar, Nicola Zamboni, Niharika Gaur, Anastasiia Efimova, Kristina M Thumfart, Eric Alexander Miska, Isabelle M Mansuy
Involvement of circulating factors in the transmission of paternal experiences through the germline. The EMBO journal 39 (23) (2020)
Yansheng Liu, Yang Mi, Torsten Mueller, Saskia Kreibich, Evan G Williams, Audrey Van Drogen, Christelle Borel, Max Frank, Pierre-Luc Germain, Isabell Bludau, Martin Mehnert, Michael Seifert, Mario Emmenlauer, Isabel Sorg, Fedor Bezrukov, Frederique Sloan Bena, Hu Zhou, Christoph Dehio, Giuseppe Testa, Julio Saez-Rodriguez, Stylianos E Antonarakis, Wolf-Dietrich Hardt, Ruedi Aebersold
Multi-omic measurements of heterogeneity in HeLa cells across laboratories. Nature biotechnology 37 (3) (2019)
Matteo Zanella, Alessandro Vitriolo, Alejandro Andirko, Pedro Tiago Martins, Stefanie Sturm, Thomas O'Rourke, Magdalena Laugsch, Natascia Malerba, Adrianos Skaros, Sebastiano Trattaro, Pierre-Luc Germain, Marija Mihailovic, Giuseppe Merla, Alvaro Rada-Iglesias, Cedric Boeckx, Giuseppe Testa
Dosage analysis of the 7q11.23 Williams region identifies BAZ1B as a major human gene patterning the modern human face and underlying self-domestication. Science advances 5 (12) (2019)
K Gapp, G van Steenwyk, Pierre-Luc Germain, W Matsushima, Konrad L M Rudolph, F Manuella, M Roszkowski, Grégoire Vernaz, T Ghosh, P Pelczar, Isabelle M Mansuy, Eric Alexander Miska
Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma. Molecular psychiatry 25 (9) (2018)
Antonio Adamo, Sina Atashpaz, Pierre-Luc Germain, Matteo Zanella, Giuseppe D'Agostino, Veronica Albertin, Josh Chenoweth, Lucia Micale, Carmela Fusco, Christian Unger, Bartolomeo Augello, Orazio Palumbo, Brad Hamilton, Massimo Carella, Emilio Donti, Giancarlo Pruneri, Angelo Selicorni, Elisa Biamino, Paolo Prontera, Ronald McKay, Giuseppe Merla, Giuseppe Testa
7q11.23 dosage-dependent dysregulation in human pluripotent stem cells affects transcriptional programs in disease-relevant lineages. Nature genetics 47 (2) (2014)

Pierre-Luc Germain.css-eqlu8i{font-size:small;padding-left:4px;} (P L Germain)

Publication Activity (10 Years)

Top Topics

Top Venues

Pierre-Luc Germain (P L Germain)