Yansheng Liu

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 73

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Science advances

Proteomics

Yale University School of Medicine

Shanghai Institutes for Biological Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Yale University School of Medicine Dec 01 2017

United States

Assistant Professor :: Pharmacology

ETH Zurich May 11 2011 - Oct 31 2017

Switzerland

Postdoc :: Biology

Education History

Shanghai Institutes for Biological Sciences

China

PHD

Publications

Xiaofeng Liao, Wenxue Li, Hongyue Zhou, Barani Kumar Rajendran, Ao Li, Jingjing Ren, Yi Luan, David A Calderwood, Benjamin E Turk, Wenwen Tang, Yansheng Liu, Dianqing Wu
The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8 + T cells. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhattacharyya, Kallol Gupta
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar T Naik, Wenxue Li, Abhishek Thavamani, Nami Kim, Nandita M Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Felipe Batalini, Emily Stern Gatof, Daniela Arango Isaza, Jaymin M Patel, Xiaodong Wang, John Gerard Clohessy, Yujing Jan Heng, Galit Lahav, Yansheng Liu, Nathanael S Gray, Xiao Zhen Zhou, Wenyi Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal antagonism of PIN1-APC/C CDH1 governs mitotic protein stability and cell cycle entry. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhattacharyya, Kallol Gupta
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
Zhenyi Hu, Po-Han Chen, Wenxue Li, Mackenzie W Krone, Sijin Zheng, Jacques Saarbach, Ines Urquizo Velasco, John Hines, Yansheng Liu, Craig M Crews
EGFR targeting PhosTACs as a dual inhibitory approach reveals differential downstream signaling. Science advances 10 (13) (2024)
Keyla Santos Guedes de Sá, Julio Silva, Rafael Bayarri-Olmos, Ryan Brinda, Robert Alec Rath Constable, Patricia A Colom Diaz, Dong-Il Kwon, Gisele Rodrigues, Li Wenxue, Christopher Baker, Bornali Bhattacharjee, Jamie Wood, Laura Tabacof, Yansheng Liu, David F Putrino, Tamas L Horvath, Akiko Iwasak
A causal link between autoantibodies and neurological symptoms in long COVID. medRxiv : the preprint server for health sciences (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar T Naik, Wenxue Li, Abhishek Thavamani, Nami Kim, Nandita M Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Felipe Batalini, Emily Stern Gatof, Daniela Arango Isaza, Jaymin M Patel, Xiaodong Wang, John Gerard Clohessy, Yujing Jan Heng, Galit Lahav, Yansheng Liu, Nathanael S Gray, Xiao Zhen Zhou, Wenyi Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal antagonism of PIN1-APC/C CDH1 governs mitotic protein stability and cell cycle entry. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Xiaofeng Liao, Wenxue Li, Hongyue Zhou, Barani Kumar Rajendran, Ao Li, Jingjing Ren, Yi Luan, David A Calderwood, Benjamin E Turk, Wenwen Tang, Yansheng Liu, Dianqing Wu
The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8 + T cells. Nature communications 15 (1) (2024)
Xiaofeng Liao, Wenxue Li, Hongyue Zhou, Barani Kumar Rajendran, Ao Li, Jingjing Ren, Yi Luan, David A Calderwood, Benjamin E Turk, Wenwen Tang, Yansheng Liu, Dianqing Wu
The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8 + T cells. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhattacharyya, Kallol Gupta
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Elizabeth M Black, Carlos Andrés Ramírez Parrado, Isabelle Trier, Wenxue Li, Yoon Ki Joo, Jennifer Pichurin, Yansheng Liu, Lilian Kabeche
Chk2 sustains PLK1 activity in mitosis to ensure proper chromosome segregation. bioRxiv : the preprint server for biology (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Zhenyi Hu, Po-Han Chen, Wenxue Li, Mackenzie W Krone, Sijin Zheng, Jacques Saarbach, Ines Urquizo Velasco, John Hines, Yansheng Liu, Craig M Crews
EGFR targeting PhosTACs as a dual inhibitory approach reveals differential downstream signaling. Science advances 10 (13) (2024)
Keyla Santos Guedes de Sá, Julio Silva, Rafael Bayarri-Olmos, Ryan Brinda, Robert Alec Rath Constable, Patricia A Colom Diaz, Dong-Il Kwon, Gisele Rodrigues, Li Wenxue, Christopher Baker, Bornali Bhattacharjee, Jamie Wood, Laura Tabacof, Yansheng Liu, David F Putrino, Tamas L Horvath, Akiko Iwasak
A causal link between autoantibodies and neurological symptoms in long COVID. medRxiv : the preprint server for health sciences (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhattacharyya, Kallol Gupta
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhattacharyya, Kallol Gupta
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhatacharyya, Kallol Gupta
A proteome-wide quantitative guide for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhatacharyya, Kallol Gupta
A proteome-wide quantitative guide for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
Xiaofeng Liao, Wenxue Li, Hongyue Zhou, Barani Kumar Rajendran, Ao Li, Jingjing Ren, Yi Luan, David A Calderwood, Benjamin E Turk, Wenwen Tang, Yansheng Liu, Dianqing Wu
The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8 + T cells. Nature communications 15 (1) (2024)
Caroline Brown, Snehasish Ghosh, Rachel McAllister, Mukesh Kumar, Gerard Walker, Eric Sun, Talat Aman, Aniruddha Panda, Shailesh Kumar, Wenxue Li, Jeff Coleman, Yansheng Liu, James E Rothman, Moitrayee Bhatacharyya, Kallol Gupta
A proteome-wide quantitative guide for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. bioRxiv : the preprint server for biology (2024)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar T Naik, Wenxue Li, Abhishek Thavamani, Nami Kim, Nandita M Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Felipe Batalini, Emily Stern Gatof, Daniela Arango Isaza, Jaymin M Patel, Xiaodong Wang, John Gerard Clohessy, Yujing Jan Heng, Galit Lahav, Yansheng Liu, Nathanael S Gray, Xiao Zhen Zhou, Wenyi Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal antagonism of PIN1-APC/C CDH1 governs mitotic protein stability and cell cycle entry. Nature communications 15 (1) (2024)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar T Naik, Wenxue Li, Abhishek Thavamani, Nami Kim, Nandita M Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Felipe Batalini, Emily Stern Gatof, Daniela Arango Isaza, Jaymin M Patel, Xiaodong Wang, John Gerard Clohessy, Yujing Jan Heng, Galit Lahav, Yansheng Liu, Nathanael S Gray, Xiao Zhen Zhou, Wenyi Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal antagonism of PIN1-APC/C CDH1 governs mitotic protein stability and cell cycle entry. Nature communications 15 (1) (2024)
Zhenyi Hu, Po-Han Chen, Wenxue Li, Mackenzie W Krone, Sijin Zheng, Jacques Saarbach, Ines Urquizo Velasco, John Hines, Yansheng Liu, Craig M Crews
EGFR targeting PhosTACs as a dual inhibitory approach reveals differential downstream signaling. Science advances 10 (13) (2024)
Zeren Toksoy, Yina Ma, Leigh Goedeke, Wenxue Li, Xiaoyue Hu, Xiaohong Wu, Marine Cacheux, Yansheng Liu, Fadi G Akar, Gerald I Shulman, Lawrence H Young
Role of AMPK in Atrial Metabolic Homeostasis and Substrate Preference. bioRxiv : the preprint server for biology (2024)
Xiaofeng Liao, Wenxue Li, Hongyue Zhou, Barani Kumar Rajendran, Ao Li, Jingjing Ren, Yi Luan, David A Calderwood, Benjamin E Turk, Wenwen Tang, Yansheng Liu, Dianqing Wu
The CUL5 E3 ligase complex negatively regulates central signaling pathways in CD8 + T cells. Nature communications 15 (1) (2024)
Wenping Zhou, Wenxue Li, Shisheng Wang, Barbora Salovska, Zhenyi Hu, Bo Tao, Yi Di, Ujwal Punyamurtula, Benjamin E Turk, William C Sessa, Yansheng Liu
An optogenetic-phosphoproteomic study reveals dynamic Akt1 signaling profiles in endothelial cells. Nature communications 14 (1) (2023)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar Naik, Abhishek Thavamani, Yansheng Liu, Wenxue Li, Nami Kim, Nandita Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Xiaodong Wang, Felipe Batalini, John Gerard Clohessy, Yujing Heng, Galit Lahav, Nathanael S Gray, Xiao Zhen Zhou, null Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal inhibition of PIN1 and APC/CCDH1 controls timely G1/S transition and creates therapeutic vulnerability. Research square (2023)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar Naik, Abhishek Thavamani, Yansheng Liu, Wenxue Li, Nami Kim, Nandita Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Xiaodong Wang, Felipe Batalini, John Gerard Clohessy, Yujing Heng, Galit Lahav, Nathanael S Gray, Xiao Zhen Zhou, null Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal inhibition of PIN1 and APC/CCDH1 controls timely G1/S transition and creates therapeutic vulnerability. Research square (2023)
Marcelo Perez-Pepe, Anthony W Desotell, Hengyi Li, Wenxue Li, Bing Han, Qishan Lin, Daryl E Klein, Yansheng Liu, Hani Goodarzi, Claudio R Alarcón
7SK methylation by METTL3 promotes transcriptional activity. Science advances 9 (19) (2023)
Marcelo Perez-Pepe, Anthony W Desotell, Hengyi Li, Wenxue Li, Bing Han, Qishan Lin, Daryl E Klein, Yansheng Liu, Hani Goodarzi, Claudio R Alarcón
7SK methylation by METTL3 promotes transcriptional activity. Science advances 9 (19) (2023)
Zhenyi Hu, Po-Han Chen, Wenxue Li, Todd Douglas, John Hines, Yansheng Liu, Craig M Crews
Targeted Dephosphorylation of Tau by Phosphorylation Targeting Chimeras (PhosTACs) as a Therapeutic Modality. Journal of the American Chemical Society (2023)
Wenping Zhou, Wenxue Li, Shisheng Wang, Barbora Salovska, Zhenyi Hu, Bo Tao, Yi Di, Ujwal Punyamurtula, Benjamin E Turk, William C Sessa, Yansheng Liu
An optogenetic-phosphoproteomic study reveals dynamic Akt1 signaling profiles in endothelial cells. Nature communications 14 (1) (2023)
Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aurelien Dugourd, George Rosenberger, Julio Saez-Rodriguez, Yansheng Liu
Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities. Clinical and translational medicine 13 (2) (2023)
Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aurelien Dugourd, George Rosenberger, Julio Saez-Rodriguez, Yansheng Liu
Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities. Clinical and translational medicine 13 (2) (2023)
Barbora Salovska, Yansheng Liu
Post-translational modification and phenotype. Proteomics 23 (3-4) (2023)
Marcelo Perez-Pepe, Anthony W Desotell, Hengyi Li, Wenxue Li, Bing Han, Qishan Lin, Daryl E Klein, Yansheng Liu, Hani Goodarzi, Claudio R Alarcón
7SK methylation by METTL3 promotes transcriptional activity. Science advances 9 (19) (2023)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
Wenping Zhou, Wenxue Li, Shisheng Wang, Barbora Salovska, Zhenyi Hu, Bo Tao, Yi Di, Ujwal Punyamurtula, Benjamin E Turk, William C Sessa, Yansheng Liu
An optogenetic-phosphoproteomic study reveals dynamic Akt1 signaling profiles in endothelial cells. Nature communications 14 (1) (2023)
Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aurelien Dugourd, George Rosenberger, Julio Saez-Rodriguez, Yansheng Liu
Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities. Clinical and translational medicine 13 (2) (2023)
Xiaoxiang Huang, Ziao Gan, Haowei Cui, Tian Lan, Yansheng Liu, Etienne Caron, Wenguang Shao
The SysteMHC Atlas v2.0, an updated resource for mass spectrometry-based immunopeptidomics. Nucleic acids research (2023)
Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aurelien Dugourd, George Rosenberger, Julio Saez-Rodriguez, Yansheng Liu
Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities. Clinical and translational medicine 13 (2) (2023)
Marcelo Perez-Pepe, Anthony W Desotell, Hengyi Li, Wenxue Li, Bing Han, Qishan Lin, Daryl E Klein, Yansheng Liu, Hani Goodarzi, Claudio R Alarcón
7SK methylation by METTL3 promotes transcriptional activity. Science advances 9 (19) (2023)
Shizhong Ke, Fabin Dang, Lin Wang, Jia-Yun Chen, Mandar Naik, Abhishek Thavamani, Yansheng Liu, Wenxue Li, Nami Kim, Nandita Naik, Huaxiu Sui, Wei Tang, Chenxi Qiu, Kazuhiro Koikawa, Xiaodong Wang, Felipe Batalini, John Gerard Clohessy, Yujing Heng, Galit Lahav, Nathanael S Gray, Xiao Zhen Zhou, null Wei, Gerburg M Wulf, Kun Ping Lu
Reciprocal inhibition of PIN1 and APC/CCDH1 controls timely G1/S transition and creates therapeutic vulnerability. Research square (2023)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
Barbora Salovska, Yansheng Liu
Post-translational modification and phenotype. Proteomics 23 (3-4) (2023)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
Vishruth Girish, Asad A Lakhani, Sarah L Thompson, Christine M Scaduto, Leanne M Brown, Ryan A Hagenson, Erin L Sausville, Brianna E Mendelson, Pranav K Kandikuppa, Devon A Lukow, Monet Lou Yuan, Eric C Stevens, Sophia N Lee, Klaske M Schukken, Saron M Akalu, Anand Vasudevan, Charles Zou, Barbora Salovska, Wenxue Li, Joan C Smith, Alison M Taylor, Robert A Martienssen, Yansheng Liu, Ruping Sun, Jason M Sheltzer
Oncogene-like addiction to aneuploidy in human cancers. Science (New York, N.Y.) (2023)
Wenxue Li, Barbora Salovska, Eugenio F Fornasiero, Yansheng Liu
Toward a hypothesis-free understanding of how phosphorylation dynamically impacts protein turnover. Proteomics (2022)
Qian Ba, Yuanyuan Hei, Anasuya Dighe, Wenxue Li, Jamie D Maziarz, Irene Pak, Shisheng Wang, Gunter P Wagner, Yansheng Liu
Proteotype coevolution and quantitative diversity across 11 mammalian species. Science advances 8 (36) (2022)
Xinghong Ma, Anasuya Dighe, Jamie Maziarz, Edwin Neumann, Eric Erkenbrack, Yuan-Yuan Hei, Yansheng Liu, Yasir Suhail, null null, Irene Pak, Andre Levchenko, Gunter P Wagner
Evolution of higher mesenchymal CD44 expression in the human lineage: A gene linked to cancer malignancy. Evolution, medicine, and public health 10 (1) (2022)
Wesley L Cai, Jocelyn Fang-Yi Chen, Huacui Chen, Emily Wingrove, Sarah J Kurley, Lok Hei Chan, Meiling Zhang, Anna Arnal-Estape, Minghui Zhao, Amer Balabaki, Wenxue Li, Xufen Yu, Ethan D Krop, Yali Dou, Yansheng Liu, Jian Jin, Thomas F Westbrook, Don X Nguyen, Qin Yan
Human WDR5 promotes breast cancer growth and metastasis via KMT2-independent translation regulation. eLife 11 (2022)
Clinton Yu, Xiaorong Wang, Wenxue Li, Yansheng Liu, Lan Huang
Developing a Bimolecular Affinity Purification Strategy to Isolate 26S Proteasome Holocomplexes for Complex-Centric Proteomic Analysis. Analytical chemistry 93 (39) (2021)
Barbora Salovska, Hongwen Zhu, Tejas Gandhi, Max Frank, Wenxue Li, George A Rosenberger, Chongde Wu, Pierre-Luc Germain, Hu Zhou, Zdenek Hodny, Lukas Reiter, Yansheng Liu
Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation. Molecular systems biology 16 (3) (2021)
Xiaoxue Zhou, Wenxue Li, Yansheng Liu, Angelika Amon
Cross-compartment signal propagation in the mitotic exit network. eLife 10 (2021)
Yansheng Liu
A peptidoform based proteomic strategy for studying functions of post-translational modifications. Proteomics (2021)
Barbora Salovska, Wenxue Li, Yi Di, Yansheng Liu
BoxCarmax: A High-Selectivity Data-Independent Acquisition Mass Spectrometry Method for the Analysis of Protein Turnover and Complex Samples. Analytical chemistry 93 (6) (2021)
Xiaojing Gao, Qing-Run Li, Yansheng Liu, Rong Zeng
Multi-in-One: Multiple-Proteases, One-Hour-Shot Strategy for Fast and High-Coverage Phosphoproteomic Investigation. Analytical chemistry 92 (13) (2020)
Rebecca C Poulos, Peter G Hains, Rohan Shah, Natasha Lucas, Dylan Xavier, Srikanth S Manda, Asim Anees, Jennifer M S Koh, Sadia Mahboob, Max Wittman, Steven G Williams, Erin K Sykes, Michael Hecker, Michael Dausmann, Merridee A Wouters, Keith Ashman, Jean Yee Hwa Yang, Peter J Wild, Anna De Fazio, Rosemary L Balleine, Brett J Tully, Ruedi Aebersold, Terence P Speed, Yansheng Liu, Roger R Reddel, Phillip J Robinson, Qing Zhong
Strategies to enable large-scale proteomics for reproducible research. Nature communications 11 (1) (2020)
Wenguang Shao, Tiannan Guo, Nora C Toussaint, Peng Xue, Ulrich Wagner, Li Li, Konstantina Charmpi, Yi Zhu, Jianmin Wu, Marija Buljan, Rui Sun, Dorothea Rutishauser, Thomas Hermanns, Christian Daniel Fankhauser, Cedric Poyet, Jelena Ljubicic, Niels Rupp, Jan H Rüschoff, Qing Zhong, Andreas Beyer, Jiafu Ji, Ben C Collins, Yansheng Liu, Gunnar Rätsch, Peter J Wild, Ruedi Aebersold
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nature communications 10 (1) (2019)
Wenxue Li, Hao Chi, Barbora Salovska, Chongde Wu, Liangliang Sun, George Rosenberger, Yansheng Liu
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition. Journal of the American Society for Mass Spectrometry 30 (8) (2019)
Martin Mehnert, Wenxue Li, Chongde Wu, Barbora Salovska, Yansheng Liu
Combining Rapid Data Independent Acquisition and CRISPR Gene Deletion for Studying Potential Protein Functions: A Case of HMGN1. Proteomics 19 (13) (2019)
Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu, Hao Yang
motifeR: An Integrated Web Software for Identification and Visualization of Protein Posttranslational Modification Motifs. Proteomics 19 (23) (2019)
Zhirong Zhang, Gergö Meszaros, Wan-Ting He, Yanfang Xu, Helena de Fatima Magliarelli, Laurent Mailly, Michael Mihlan, Yansheng Liu, Marta Puig Gámez, Alexander Goginashvili, Adrien Pasquier, Olga Bielska, Bénédicte Neven, Pierre Quartier, Rudolf Aebersold, Thomas F Baumert, Philippe Georgel, Jiahuai Han, Romeo Ricci
Protein kinase D at the Golgi controls NLRP3 inflammasome activation. The Journal of experimental medicine 214 (9) (2017)
Ben C Collins, Christie L Hunter, Yansheng Liu, Birgit Schilling, George A Rosenberger, Samuel L Bader, Daniel W Chan, Bradford W Gibson, Anne-Claude Gingras, Jason M Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P Molloy, Robert L Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. Nature communications 8 (1) (2017)
Yansheng Liu, Christelle Borel, Li Li, Torsten Müller, Evan G Williams, Pierre-Luc Germain, Marija Buljan, Tatjana Sajic, Paul J Boersema, Wenguang Shao, Marco Faini, Giuseppe Testa, Andreas Beyer, Stylianos E Antonarakis, Ruedi Aebersold
Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells. Nature communications 8 (1) (2017)
George A Rosenberger, Isabell Bludau, Uwe Schmitt, Moritz Heusel, Christie L Hunter, Yansheng Liu, Michael J MacCoss, Brendan X MacLean, Alexey I Nesvizhskii, Patrick G A Pedrioli, Lukas Reiter, Hannes L Röst, Stephen Tate, Ying Sonia Ting, Ben C Collins, Ruedi Aebersold
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. Nature methods 14 (9) (2017)
George A Rosenberger, Yansheng Liu, Hannes L Röst, Christina Ludwig, Alfonso A Buil Demur, Ariel Bensimon, Martin Soste, Tim D Spector, Emmanouil T Dermitzakis, Ben C Collins, Lars Malmström, Ruedi Aebersold
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature biotechnology 35 (8) (2017)

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Yansheng Liu