George A Rosenberger (George Rosenberger)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 28

Top Topics

Epithelial Mesenchymal Transition

Mass Spectrometry

Tyrosine Kinase

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Molecular systems biology

This page only lists publications with an associated author ORCID identifier.

Publications

Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis. Nature communications 15 (1) (2024)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
Ella Doron-Mandel, Benjamin J Bokor, Yanzhe Ma, Lena A Street, Lauren C Tang, Ahmed A Abdou, Neel H Shah, George A Rosenberger, Marko Jovanovic
SEC-TMT facilitates quantitative differential analysis of protein interaction networks. bioRxiv : the preprint server for biology (2023)
Ella Doron-Mandel, Benjamin J Bokor, Yanzhe Ma, Lena A Street, Lauren C Tang, Ahmed A Abdou, Neel H Shah, George A Rosenberger, Marko Jovanovic
SEC-TMT facilitates quantitative differential analysis of protein interaction networks. bioRxiv : the preprint server for biology (2023)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
George A Rosenberger, Wenxue Li, Mikko Turunen, Jing He, Prem S Subramaniam, Sergey Pampou, Aaron T Griffin, Charles Karan, Patrick Kerwin, Diana Murray, Barry Honig, Yansheng Liu, Andrea Califano
Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis. bioRxiv : the preprint server for biology (2023)
Vadim Demichev, Lukasz Szyrwiel, Fengchao Yu, Guo Ci Teo, George A Rosenberger, Agathe Niewienda, Daniela Ludwig, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S Lilley, Michael Mülleder, Alexey I Nesvizhskii, Markus Ralser
dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts. Nature communications 13 (1) (2022)
Isabell Bludau, Max Frank, Christian Dörig, Yujia Cai, Moritz Heusel, George A Rosenberger, Paola Picotti, Ben C Collins, Hannes L Röst, Ruedi Aebersold
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. Nature communications 12 (1) (2021)
Barbora Salovska, Hongwen Zhu, Tejas Gandhi, Max Frank, Wenxue Li, George A Rosenberger, Chongde Wu, Pierre-Luc Germain, Hu Zhou, Zdenek Hodny, Lukas Reiter, Yansheng Liu
Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation. Molecular systems biology 16 (3) (2021)
Isabell Bludau, Moritz Heusel, Max Frank, George A Rosenberger, Robin Hafen, Amir Banaei-Esfahani, Audrey van Drogen, Ben C Collins, Matthias Gstaiger, Ruedi Aebersold
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes. Nature protocols 15 (8) (2020)
Moritz Heusel, Isabell Bludau, George A Rosenberger, Robin Hafen, Max Frank, Amir Banaei-Esfahani, Audrey van Drogen, Ben C Collins, Matthias Gstaiger, Ruedi Aebersold
Complex-centric proteome profiling by SEC-SWATH-MS. Molecular systems biology 15 (1) (2019)
Christina Ludwig, Ludovic Gillet, George A Rosenberger, Sabine Amon, Ben C Collins, Ruedi Aebersold
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial. Molecular systems biology 14 (8) (2018)
Ben C Collins, Christie L Hunter, Yansheng Liu, Birgit Schilling, George A Rosenberger, Samuel L Bader, Daniel W Chan, Bradford W Gibson, Anne-Claude Gingras, Jason M Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P Molloy, Robert L Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. Nature communications 8 (1) (2017)
George A Rosenberger, Isabell Bludau, Uwe Schmitt, Moritz Heusel, Christie L Hunter, Yansheng Liu, Michael J MacCoss, Brendan X MacLean, Alexey I Nesvizhskii, Patrick G A Pedrioli, Lukas Reiter, Hannes L Röst, Stephen Tate, Ying Sonia Ting, Ben C Collins, Ruedi Aebersold
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. Nature methods 14 (9) (2017)
Hannes L Röst, Timo Sachsenberg, Stephan Aiche, Chris Bielow, Hendrik Weisser, Fabian Aicheler, Sandro Andreotti, Hans-Christian Ehrlich, Petra Gutenbrunner, Erhan Kenar, Xiao Liang, Sven Nahnsen, Lars Nilse, Julianus Pfeuffer, George A Rosenberger, Marc Rurik, Uwe Schmitt, Johannes Veit, Mathias Walzer, David Wojnar, Witold E Wolski, Oliver Schilling, Jyoti S Choudhary, Lars Malmström, Ruedi Aebersold, Knut Reinert, Oliver Kohlbacher
OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature methods 13 (9) (2017)
George A Rosenberger, Yansheng Liu, Hannes L Röst, Christina Ludwig, Alfonso A Buil Demur, Ariel Bensimon, Martin Soste, Tim D Spector, Emmanouil T Dermitzakis, Ben C Collins, Lars Malmström, Ruedi Aebersold
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature biotechnology 35 (8) (2017)
Hannes L Röst, Yansheng Liu, Giuseppe D'Agostino, Matteo Zanella, Pedro Navarro, George A Rosenberger, Ben C Collins, Ludovic Gillet, Giuseppe Testa, Lars Malmström, Ruedi Aebersold
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics. Nature methods 13 (9) (2016)
Hannes L Röst, George A Rosenberger, Pedro Navarro, Ludovic Gillet, Saša M Miladinović, Olga T Schubert, Witold Wolski, Ben C Collins, Johan Malmström, Lars Malmström, Ruedi Aebersold
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data. Nature biotechnology 32 (3) (2015)
Thomas Walzthoeni, Lukasz A Joachimiak, George A Rosenberger, Hannes L Röst, Lars Malmström, Alexander Leitner, Judith Frydman, Ruedi Aebersold
xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry. Nature methods 12 (12) (2015)