Samie R Jaffrey

Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 60

Top Topics

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Nature chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Zhongxuan Zhang, Xiaoxiao Rong, Tianjin Xie, Zehao Li, Haozhi Song, Shujun Zhen, Haifeng Wang, Jiahui Wu, Samie R Jaffrey, Xing Li
Fluorogenic CRISPR for genomic DNA imaging. Nature communications 15 (1) (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Zhongxuan Zhang, Xiaoxiao Rong, Tianjin Xie, Zehao Li, Haozhi Song, Shujun Zhen, Haifeng Wang, Jiahui Wu, Samie R Jaffrey, Xing Li
Fluorogenic CRISPR for genomic DNA imaging. Nature communications 15 (1) (2024)
Maxim D Oleynikov, Samie R Jaffrey
RNA tertiary structure and conformational dynamics revealed by BASH MaP. bioRxiv : the preprint server for biology (2024)
Jianheng Fox Liu, Samie R Jaffrey
Dinoflagellate mRNA is pervasively modified with m 1 A. EMBO reports (2024)
Zhongxuan Zhang, Xiaoxiao Rong, Tianjin Xie, Zehao Li, Haozhi Song, Shujun Zhen, Haifeng Wang, Jiahui Wu, Samie R Jaffrey, Xing Li
Fluorogenic CRISPR for genomic DNA imaging. Nature communications 15 (1) (2024)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Mark R Lundquist, Samie R Jaffrey
Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes 14 (12) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Sara Zaccara, Ryan J Ries, Samie R Jaffrey
Publisher Correction: Reading, writing and erasing mRNA methylation. Nature reviews. Molecular cell biology (2023)
Luiz F M Passalacqua, Mary R Starich, Katie A Link, Jiahui Wu, Jay R Knutson, Nico Tjandra, Samie R Jaffrey, Adrian R Ferre-D'Amare
Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nature communications 14 (1) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Mark R Lundquist, Samie R Jaffrey
Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes 14 (12) (2023)
Luiz F M Passalacqua, Michael T Banco, Jared D Moon, Xing Li, Samie R Jaffrey, Adrian R Ferre-D'Amare
Intricate 3D architecture of a DNA mimic of GFP. Nature (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Jason G Dumelie, Qiuying Chen, Dawson Miller, Nabeel Attarwala, Steven S Gross, Samie R Jaffrey
Biomolecular condensates create phospholipid-enriched microenvironments. Nature chemical biology (2023)
Mark R Lundquist, Samie R Jaffrey
Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes 14 (12) (2023)
Mark R Lundquist, Samie R Jaffrey
Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2. Genes 14 (12) (2023)
Ryan J Ries, Brian F Pickering, Hui Xian Poh, Sim Namkoong, Samie R Jaffrey
m 6 A governs length-dependent enrichment of mRNAs in stress granules. Nature structural & molecular biology (2023)
Jin Wang, Bing Liang Alvin Chew, Yong Lai, Hongping Dong, Luang Xu, Yu Liu, Xin-Yuan Fu, Zhenguo Lin, Pei-Yong Shi, Timothy K Lu, Dahai Luo, Samie R Jaffrey, Peter C Dedon
A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature protocols (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature (2023)
Vladimir Despic, Samie R Jaffrey
mRNA ageing shapes the Cap2 methylome in mammalian mRNA. Nature 614 (7947) (2023)
Julien Moretti, Baosen Jia, Zachary Hutchins, Soumit Roy, Hilary Yip, Jiahui Wu, Meimei Shan, Samie R Jaffrey, Jörn Coers, J Magarian Blander
Caspase-11 interaction with NLRP3 potentiates the noncanonical activation of the NLRP3 inflammasome. Nature immunology 23 (5) (2022)
Idálio J Viegas, Juan Pereira de Macedo, Lúcia Serra, Mariana De Niz, Adriana Temporão, Sara Silva Pereira, Aashiq H Mirza, Ed Bergstrom, João A Rodrigues, Francisco Aresta-Branco, Samie R Jaffrey, Luisa Miranda Figueiredo
N 6 -methyladenosine in poly(A) tails stabilize VSG transcripts. Nature 604 (7905) (2022)
Sameer Dixit, Samie R Jaffrey
Expanding the epitranscriptome: Dihydrouridine in mRNA. PLoS biology 20 (7) (2022)
Hui Xian Poh, Aashiq H Mirza, Brian F Pickering, Samie R Jaffrey
Alternative splicing of METTL3 explains apparently METTL3-independent m6A modifications in mRNA. PLoS biology 20 (7) (2022)
Mariachiara Micaelli, Andrea Dalle Vedove, Linda Cerofolini, Jacopo Vigna, Denise Sighel, Sara Zaccara, Isabelle Bonomo, Georgios Poulentzas, Emanuele Filiberto Rosatti, Giulia Cazzanelli, Laura Alunno, Romina Belli, Daniele Peroni, Erik Dassi, Shino Murakami, Samie R Jaffrey, Marco Fragai, Ines Mancini, Graziano Lolli, Alessandro Quattrone, Alessandro Provenzani
Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs. ACS pharmacology & translational science 5 (10) (2022)
Yuhki Saito, Ben R Hawley, M Rhyan Puno, Shreya N Sarathy, Christopher D Lima, Samie R Jaffrey, Robert B Darnell, Scott Keeney, Devanshi Jain
YTHDC2 control of gametogenesis requires helicase activity but not m 6 A binding. Genes & development 36 (3-4) (2022)
Bria S VarnBuhler, Jared Moon, Sourav Kumar Dey, Jiahui Wu, Samie R Jaffrey
Detection of SARS-CoV-2 RNA Using a DNA Aptamer Mimic of Green Fluorescent Protein. ACS chemical biology 17 (4) (2022)
Jiahui Wu, Nina Svensen, Wenjiao Song, Hyaeyeong Kim, Sulei Zhang, Xing Li, Samie R Jaffrey
Self-Assembly of Intracellular Multivalent RNA Complexes Using Dimeric Corn and Beetroot Aptamers. Journal of the American Chemical Society 144 (12) (2022)
Xing Li, Jiahui Wu, Samie R Jaffrey
Engineering Fluorophore Recycling in a Fluorogenic RNA Aptamer. Angewandte Chemie (International ed. in English) 60 (45) (2021)
Sourav Kumar Dey, Grigory S Filonov, Anthony O Olarerin-George, Benjamin T Jackson, Lydia W S Finley, Samie R Jaffrey
Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag. Nature chemical biology 18 (2) (2021)
Lynda Truong, Hamed Kooshapur, Sourav Kumar Dey, Xing Li, Nico Tjandra, Samie R Jaffrey, Adrian R Ferre-D'Amare
The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nature chemical biology 18 (2) (2021)
Linghe Xi, Thomas Carroll, Irina Matos, Ji-Dung Luo, Lisa Polak, H Amalia Pasolli, Samie R Jaffrey, Elaine Fuchs
m6A RNA methylation impacts fate choices during skin morphogenesis. eLife 9 (2020)
Xing Li, Liuting Mo, Jacob L Litke, Sourav Kumar Dey, Scott R Suter, Samie R Jaffrey
Imaging Intracellular S-Adenosyl Methionine Dynamics in Live Mammalian Cells with a Genetically Encoded Red Fluorescent RNA-Based Sensor. Journal of the American Chemical Society 142 (33) (2020)
Xing Li, Hyaeyeong Kim, Jacob L Litke, Jiahui Wu, Samie R Jaffrey
Fluorophore-Promoted RNA Folding and Photostability Enables Imaging of Single Broccoli-Tagged mRNAs in Live Mammalian Cells. Angewandte Chemie (International ed. in English) 59 (11) (2020)
Grigory S Filonov, Wenjiao Song, Samie R Jaffrey
Spectral Tuning by a Single Nucleotide Controls the Fluorescence Properties of a Fluorogenic Aptamer. Biochemistry 58 (12) (2019)
Anya V Grozhik, Anthony O Olarerin-George, Miriam Sindelar, Xing Li, Steven S Gross, Samie R Jaffrey
Antibody cross-reactivity accounts for widespread appearance of m1A in 5'UTRs. Nature communications 10 (1) (2019)
Anya V Grozhik, Samie R Jaffrey
Distinguishing RNA modifications from noise in epitranscriptome maps. Nature chemical biology 14 (3) (2019)
Samie R Jaffrey, Miles F Wilkinson
Nonsense-mediated RNA decay in the brain: emerging modulator of neural development and disease. Nature reviews. Neuroscience 19 (12) (2019)
Jiahui Wu, Sara Zaccara, Deepak Khuperkar, Hyaeyeong Kim, Marvin E Tanenbaum, Samie R Jaffrey
Live imaging of mRNA using RNA-stabilized fluorogenic proteins. Nature methods 16 (9) (2019)
Jan Mauer, Miriam Sindelar, Vladimir Despic, Théo Guez, Ben R Hawley, Jean-Jacques Vasseur, Andrea Rentmeister, Steven S Gross, Livio Pellizzoni, Françoise Debart, Hani Goodarzi, Samie R Jaffrey
FTO controls reversible m6Am RNA methylation during snRNA biogenesis. Nature chemical biology 15 (4) (2019)
Sara Zaccara, Ryan J Ries, Samie R Jaffrey
Reading, writing and erasing mRNA methylation. Nature reviews. Molecular cell biology 20 (10) (2019)
Jacob L Litke, Samie R Jaffrey
Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts. Nature biotechnology 37 (6) (2019)
Baixing Wu, Shichen Su, Deepak P Patil, Hehua Liu, Jianhua Gan, Samie R Jaffrey, Jinbiao Ma
Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1. Nature communications 9 (1) (2018)
Ly P Vu, Brian F Pickering, Yuanming Cheng, Sara Zaccara, Diu Nguyen, Gerard Minuesa, Timothy Chou, Arthur Chow, Yogesh Saletore, Matthew MacKay, Jessica Schulman, Christopher Famulare, Minal Patel, Virginia M Klimek, Francine E Garrett-Bakelman, Ari Melnick, Martin Carroll, Christopher E Mason, Samie R Jaffrey, Michael Gregory Kharas
The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells. Nature medicine 23 (11) (2017)
Jason G Dumelie, Samie R Jaffrey
Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq. eLife 6 (2017)