Pei-Yong Shi

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 77

Top Topics

Monoclonal Antibody

Roux En Y Gastric Bypass

Top Venues

Nature communications

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Lijing Zhang, Xuping Xie, Hannan Luo, Runtong Qian, Yang Yang, Hongtao Yu, Jing Huang, Pei-Yong Shi, Qi Hu
Resistance mechanisms of SARS-CoV-2 3CLpro to the non-covalent inhibitor WU-04. Cell discovery 10 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang, Ningbo Zheng, Ashley M Guerrero, Nicholas A Egan, Ritu Bohat, Si Chen, Caishang Zheng, Xiaobo Mao, S Stephen Yi, Ken Chen, Daniel J McGrail, Nidhi Sahni, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection. Nature communications 15 (1) (2024)
Ankita Singh, Awadalkareem Adam, Leslie Rodriguez, Bi-Hung Peng, Binbin Wang, Xuping Xie, Pei-Yong Shi, Kohei Homma, Tian Wang
Oral Supplementation with AHCC ® , a Standardized Extract of Cultured Lentinula edodes Mycelia, Enhances Host Resistance against SARS-CoV-2 Infection. Pathogens (Basel, Switzerland) 12 (4) (2023)
Ankita Singh, Awadalkareem Adam, Leslie Rodriguez, Bi-Hung Peng, Binbin Wang, Xuping Xie, Pei-Yong Shi, Kohei Homma, Tian Wang
Oral Supplementation with AHCC ® , a Standardized Extract of Cultured Lentinula edodes Mycelia, Enhances Host Resistance against SARS-CoV-2 Infection. Pathogens (Basel, Switzerland) 12 (4) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Jing Zou, Chaitanya Kurhade, Hope C Chang, Yanping Hu, Jose A Meza, David Beaver, Ky Trinh, Joseph Omlid, Bassem Elghetany, Ragini Desai, Peter McCaffrey, Juan D Garcia, Pei-Yong Shi, Ping Ren, Xuping Xie
An Integrated Research-Clinical BSL-2 Platform for a Live SARS-CoV-2 Neutralization Assay. Viruses 15 (9) (2023)
Jule Goike, Ching-Lin Hsieh, Andrew P Horton, Elizabeth C Gardner, Ling Zhou, Foteini Bartzoka, Nianshuang Wang, Kamyab Javanmardi, Andrew Herbert, Shawn Abbassi, Xuping Xie, Hongjie Xia, Pei-Yong Shi, Rebecca L Renberg, Thomas H Segall-Shapiro, Cynthia I Terrace, Wesley Wu, Raghav Shroff, Michelle Byrom, Andrew D Ellington, Edward M Marcotte, James M Musser, Suresh V Kuchipudi, Vivek Kapur, George Georgiou, Scott C Weaver, John M Dye, Daniel R Boutz, Jason S Mclellan, Jimmy D Gollihar
SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Communications biology 6 (1) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Awadalkareem Adam, Birte Kalveram, John Yun-Chung Chen, Jason Yeung, Leslie Rodriguez, Ankita Singh, Pei-Yong Shi, Xuping Xie, Tian Wang
A single-dose of intranasal vaccination with a live-attenuated SARS-CoV-2 vaccine candidate promotes protective mucosal and systemic immunity. NPJ vaccines 8 (1) (2023)
Ankita Singh, Awadalkareem Adam, Leslie Rodriguez, Bi-Hung Peng, Binbin Wang, Xuping Xie, Pei-Yong Shi, Kohei Homma, Tian Wang
Oral Supplementation with AHCC ® , a Standardized Extract of Cultured Lentinula edodes Mycelia, Enhances Host Resistance against SARS-CoV-2 Infection. Pathogens (Basel, Switzerland) 12 (4) (2023)
Jin Wang, Bing Liang Alvin Chew, Yong Lai, Hongping Dong, Luang Xu, Yu Liu, Xin-Yuan Fu, Zhenguo Lin, Pei-Yong Shi, Timothy K Lu, Dahai Luo, Samie R Jaffrey, Peter C Dedon
A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature protocols (2023)
Ankita Singh, Awadalkareem Adam, Leslie Rodriguez, Bi-Hung Peng, Binbin Wang, Xuping Xie, Pei-Yong Shi, Kohei Homma, Tian Wang
Oral Supplementation with AHCC ® , a Standardized Extract of Cultured Lentinula edodes Mycelia, Enhances Host Resistance against SARS-CoV-2 Infection. Pathogens (Basel, Switzerland) 12 (4) (2023)
Zhiqiang Ku, Xuping Xie, Jian Qing Lin, Peng Gao, Bin Wu, Abbas El Sahili, Hang Su, Yang Liu, Xiaohua Ye, Eddie Yongjun Tan, Xin Li, Xuejun Fan, Boon Chong Goh, Wei Xiong, Hannah Boyd, Antonio E Muruato, Hui Deng, Hongjie Xia, Jing Zou, Birte K Kalveram, Vineet D Menachery, Ningyan Zhang, Julien Lescar, Pei-Yong Shi, Zhiqiang An
Engineering SARS-CoV-2 specific cocktail antibodies into a bispecific format improves neutralizing potency and breadth. Nature communications 13 (1) (2022)
Christopher M Richards, Sabrina Jabs, Wenjie Qiao, Lauren D Varanese, Michaela Schweizer, Peter R Mosen, Nicholas M Riley, Malte Klüssendorf, James R Zengel, Ryan A Flynn, Arjun Rustagi, John C Widen, Christine E Peters, Yaw Shin Ooi, Xuping Xie, Pei-Yong Shi, Vibhu Prasad, Andreas S Puschnik, Matthew M Bogyo, Carolyn R Bertozzi, Catherine A Blish, Dominic Winter, Claude M Nagamine, Thomas Braulke, Jan E Carette
The human disease gene LYSET is essential for lysosomal enzyme transport and viral infection. Science (New York, N.Y.) 378 (6615) (2022)
Mariana F Tioni, Robert Jordan, Angie Silva Pena, Aditya Garg, Danlu Wu, Shannon I Phan, Christopher M Weiss, Xing Cheng, Jack Greenhouse, Tatyana Orekov, Daniel Valentin, Swagata Kar, Laurent Pessaint, Hanne A Elyard, Christopher C Stobart, Melissa H Bloodworth, R Stokes Peebles, Yang Liu, Xuping Xie, Pei-Yong Shi, Martin L Moore, Roderick S Tang
Mucosal administration of a live attenuated recombinant COVID-19 vaccine protects nonhuman primates from SARS-CoV-2. NPJ vaccines 7 (1) (2022)
Renee L Hajnik, Jessica A Plante, Yuejin Liang, Mohamad-Gabriel Alameh, Jin-Yi Tang, Srinivasa Reddy Bonam, Chaojie Zhong, Awadalkareem Adam, Dionna Scharton, Grace H Rafael, Yang Liu, Nicholas C Hazell, Jiaren Sun, Lynn Soong, Pei-Yong Shi, Tian Wang, David H Walker, Jie Sun, Drew Weissman, Scott C Weaver, Kenneth S Plante, Haitao Hu
Dual spike and nucleocapsid mRNA vaccination confer protection against SARS-CoV-2 Omicron and Delta variants in preclinical models. Science translational medicine 14 (662) (2022)
Jing Zou, Hongjie Xia, Xuping Xie, Chaitanya Kurhade, Rafael R G Machado, Scott C Weaver, Ping Ren, Pei-Yong Shi
Neutralization against Omicron SARS-CoV-2 from previous non-Omicron infection. Nature communications 13 (1) (2022)
Li Wang, Markus H Kainulainen, Nannan Jiang, Han Di, Gaston Bonenfant, Lisa Mills, Michael Currier, Punya Shrivastava-Ranjan, Brenda M Calderon, Mili Sheth, Brian R Mann, Jaber Hossain, Xudong Lin, Sandra Lester, Elizabeth A Pusch, Joyce Jones, Dan Cui, Payel Chatterjee, M Harley Jenks, Esther K Morantz, Gloria P Larson, Masato Hatta, Jennifer L Harcourt, Azaibi Tamin, Yan Li, Ying Tao, Kun Zhao, Kristine A Lacek, Ashley Burroughs, Wei Wang, Malania Wilson, Terianne Wong, So Hee Park, Suxiang Tong, John R Barnes, Mark W Tenforde, Wesley H Self, Nathan I Shapiro, Matthew C Exline, D Clark Files, Kevin W Gibbs, David N Hager, Manish Patel, Alison L Halpin, Laura K McMullan, Justin S Lee, Hongjie Xia, Xuping Xie, Pei-Yong Shi, C Todd Davis, Christina F Spiropoulou, Natalie J Thornburg, M Steven Oberste, Vivien G Dugan, null null, David E Wentworth, Bin Zhou
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines. Nature communications 13 (1) (2022)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature 610 (7931) (2022)
Yan Fang, Pengcheng Sun, Xuping Xie, Mingjian Du, Fenghe Du, Jianfeng Ye, Birte K Kalveram, Jessica A Plante, Kenneth S Plante, Bo Li, Xiao-Chen Bai, Pei-Yong Shi, Zhijian J Chen
An antibody that neutralizes SARS-CoV-1 and SARS-CoV-2 by binding to a conserved spike epitope outside the receptor binding motif. Science immunology 7 (76) (2022)
Jiakai Hou, Yanjun Wei, Jing Zou, Roshni Jaffery, Shaoheng Liang, Caishang Zheng, Ken Chen, Pei-Yong Shi, Yiwen Chen, Xuping Xie, Weiyi Peng
Integrated multi-omics analyses identify key anti-viral host factors and pathways controlling SARS-CoV-2 infection. Research square (2022)
Chaitanya Kurhade, Jing Zou, Hongjie Xia, Hui Cai, Qi Yang, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Xuping Xie, Kena A Swanson, Pei-Yong Shi
Neutralization of Omicron BA.1, BA.2, and BA.3 SARS-CoV-2 by 3 doses of BNT162b2 vaccine. Nature communications 13 (1) (2022)
Marciela M DeGrace, Elodie Ghedin, Matthew B Friemann, Florian Krammer, Alba Grifoni, Arghavan Alisoltani, Galit Alter, Rama Rao Amara, Ralph S Baric, Dan H Barouch, Jesse D Bloom, Louis-Marie Bloyet, Gaston Bonenfant, Adrianus C M Boon, Eli A Boritz, Debbie L Bratt, Traci L Bricker, Liliana Brown, William J Buchser, Juan Manuel Carreño, Liel Cohen-Lavi, Tamarand L Darling, Meredith E Davis-Gardner, Bethany L Dearlove, Han Di, Meike Dittmann, Nicole A Doria-Rose, Daniel C Douek, Christian Drosten, Venkata-Viswanadh Edara, Ali H Ellebedy, Thomas P Fabrizio, Guido Ferrari, Will M Fischer, William C Florence, Ron A M Fouchier, John Franks, Adolfo García-Sastre, Adam Godzik, Ana Silvia Gonzalez-Reiche, Aubree Gordon, Bart L Haagmans, Peter J Halfmann, David D Ho, Michael R Holbrook, Yaoxing Huang, Sarah L James, Lukasz Jaroszewski, Trushar Jeevan, Robert M Johnson, Terry C Jones, Astha Joshi, Yoshihiro Kawaoka, Lisa Kercher, Marion P G Koopmans, Bette T Korber, Eilay Koren, Richard A Koup, Eric B LeGresley, Jacob E Lemieux, Mariel J Liebeskind, Zhuoming Liu, Brandi Livingston, James P Logue, Yang Luo, Adrian B McDermott, Margaret J McElrath, Victoria A Meliopoulos, Vineet D Menachery, David C Montefiori, Barbara Mühlemann, Vincent J Munster, Jenny E Munt, Manoj S Nair, Antonia Netzl, Anna M Niewiadomska, Sijy O'Dell, Andrew S Pekosz, Stanley Perlman, Marjorie C Pontelli, Barry Rockx, Morgane Rolland, Paul W Rothlauf, Sinai Sacharen, Richard H Scheuermann, Stephen D Schmidt, Michael Schotsaert, Stacey Schultz-Cherry, Robert A Seder, Mayya Sedova, Alessandro Sette, Reed S Shabman, Xiaoying Shen, Pei-Yong Shi, Maulik Shukla, Viviana Simon, Spencer Stumpf, Nancy J Sullivan, Larissa B Thackray, James Theiler, Paul Glyndwr Thomas, Sanja Trifkovic, Sina Türeli, Samuel A Turner, Maria A Vakaki, Harm van Bakel, Laura A VanBlargan, Leah R Vincent, Zachary S Wallace, Li Wang, Maple Wang, Pengfei Wang, Wei Wang, Scott C Weaver, Richard John Webby, Carol D Weiss, David E Wentworth, Stuart M Weston, Sean P J Whelan, Bradley M Whitener, Samuel H Wilks, Xuping Xie, Baoling Ying, Hyejin Yoon, Bin Zhou, Tomer Hertz, Derek J Smith, Michael S. Diamond, Diane J Post, Mehul S Suthar
Defining the risk of SARS-CoV-2 variants on immune protection. Nature 605 (7911) (2022)
Yang Liu, Xianwen Zhang, Jianying Liu, Hongjie Xia, Jing Zou, Antonio E Muruato, Sivakumar Periasamy, Chaitanya Kurhade, Jessica A Plante, Nathen E Bopp, Birte Kalveram, Alexander Bukreyev, Ping Ren, Tian Wang, Vineet D Menachery, Kenneth S Plante, Xuping Xie, Scott C Weaver, Pei-Yong Shi
A live-attenuated SARS-CoV-2 vaccine candidate with accessory protein deletions. Nature communications 13 (1) (2022)
Jing Zou, Chaitanya Kurhade, Hongjie Xia, Mingru Liu, Xuping Xie, Ping Ren, Pei-Yong Shi
Cross-neutralization of Omicron BA.1 against BA.2 and BA.3 SARS-CoV-2. Nature communications 13 (1) (2022)
Chaitanya Kurhade, Jing Zou, Hongjie Xia, Mingru Liu, Hope C Chang, Ping Ren, Xuping Xie, Pei-Yong Shi
Low neutralization of SARS-CoV-2 Omicron BA.2.75.2, BQ.1.1, and XBB.1 by parental mRNA vaccine or a BA.5-bivalent booster. Nature medicine (2022)
Yang Liu, Xianwen Zhang, Jianying Liu, Hongjie Xia, Jing Zou, Antonio E Muruato, Sivakumar Periasamy, Chaitanya Kurhade, Jessica A Plante, Nathen E Bopp, Birte Kalveram, Alexander Bukreyev, Ping Ren, Tian Wang, Vineet D Menachery, Kenneth S Plante, Xuping Xie, Scott C Weaver, Pei-Yong Shi
Publisher Correction: A live-attenuated SARS-CoV-2 vaccine candidate with accessory protein deletions. Nature communications 13 (1) (2022)
Jianying Liu, Yang Liu, Hongjie Xia, Jing Zou, Scott C Weaver, Kena A Swanson, Hui Cai, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Ugur Sahin, Xuping Xie, Philip R Dormitzer, Pei-Yong Shi
BNT162b2-elicited neutralization of Delta plus, Lambda, Mu, B.1.1.519, and Theta SARS-CoV-2 variants. NPJ vaccines 7 (1) (2022)
Rita E Chen, Emma S Winkler, James Brett Case, Ishmael D Aziati, Traci L Bricker, Astha Joshi, Tamarand L Darling, Baoling Ying, John M Errico, Swathi Shrihari, Laura A VanBlargan, Xuping Xie, Pavlo Gilchuk, Seth J Zost, Lindsay Droit, Zhuoming Liu, Spencer Stumpf, David Wang, Scott A Handley, W Blaine Stine, Pei-Yong Shi, Meredith E Davis-Gardner, Mehul S Suthar, Miguel Garcia Knight, Raul Andino, Charles Y Chiu, Ali H Ellebedy, Daved H Fremont, Sean P J Whelan, James E Crowe, Lisa Purcell, Davide Corti, Adrianus C M Boon, Michael S. Diamond
In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Nature 596 (7870) (2021)
Stephanie A Moquin, Oliver Simon, Ratna Karuna, Suresh B Lakshminarayana, Fumiaki Yokokawa, Feng Wang, Chandra Saravanan, Jin Zhang, Craig W Day, Katherine Chan, Qing-Yin Wang, Siyan Lu, Hongping Dong, Kah Fei Wan, Siew Pheng Lim, Wei Liu, Cheah Chen Seh, Yen-Liang Chen, Haoying Xu, David T Barkan, Cyrille S Kounde, Wei Lin Sandra Sim, Gang Wang, Hui-Quan Yeo, Bin Zou, Wai Ling Chan, Mei Ding, Jae-Geun Song, Min Li, Colin Osborne, Francesca Blasco, Christopher Sarko, David Beer, Ghislain M C Bonamy, Vito G Sasseville, Pei-Yong Shi, Thierry Tidiane Diagana, Bryan K S Yeung, Feng Gu
NITD-688, a pan-serotype inhibitor of the dengue virus NS4B protein, shows favorable pharmacokinetics and efficacy in preclinical animal models. Science translational medicine 13 (579) (2021)
Jinhui Dong, Seth J Zost, Allison J Greaney, Tyler N Starr, Adam S Dingens, Elaine C Chen, Rita E Chen, James Brett Case, Rachel E Sutton, Pavlo Gilchuk, Jessica Rodriguez, Erica Armstrong, Christopher Gainza, Rachel S Nargi, Elad M Binshtein, Xuping Xie, Xianwen Zhang, Pei-Yong Shi, James P Logue, Stuart Weston, Marisa E McGrath, Matthew B Friemann, Tyler Brady, Kevin M Tuffy, Helen Bright, Yueh-Ming Loo, Patrick M McTamney, Mark T Esser, Robert H Carnahan, Michael S. Diamond, Jesse D Bloom, James E Crowe
Genetic and structural basis for SARS-CoV-2 variant neutralization by a two-antibody cocktail. Nature microbiology 6 (10) (2021)
Yang Liu, Jianying Liu, Kenneth S Plante, Jessica A Plante, Xuping Xie, Xianwen Zhang, Zhiqiang Ku, Zhiqiang An, Dionna Scharton, Craig Schindewolf, Steven G Widen, Vineet D Menachery, Pei-Yong Shi, Scott C Weaver
The N501Y spike substitution enhances SARS-CoV-2 infection and transmission. Nature (2021)
Nanda Kishore Routhu, Narayanaiah Cheedarla, Venkata Satish Bollimpelli, Sailaja Gangadhara, Venkata-Viswanadh Edara, Lilin Lai, Anusmita Sahoo, Ayalnesh Shiferaw, Tiffany M Styles, Katharine A Floyd, Stephanie Fischinger, Caroline G Atyeo, Sally A Shin, Sanjeev Gumber, Shannon Kirejczyk, Kenneth H Dinnon, Pei-Yong Shi, Vineet D Menachery, Mark Tomai, Christopher B Fox, Galit Alter, Thomas H Vanderford, Lisa E Gralinski, Mehul S Suthar, Rama Rao Amara
SARS-CoV-2 RBD trimer protein adjuvanted with Alum-3M-052 protects from SARS-CoV-2 infection and immune pathology in the lung. Nature communications 12 (1) (2021)
Jianying Liu, Yang Liu, Hongjie Xia, Jing Zou, Scott C Weaver, Kena A Swanson, Hui Cai, Mark Cutler, David Cooper, Alexander Muik, Kathrin U Jansen, Ugur Sahin, Xuping Xie, Philip R Dormitzer, Pei-Yong Shi
BNT162b2-elicited neutralization of B.1.617 and other SARS-CoV-2 variants. Nature 596 (7871) (2021)
Jackson S Turner, Jane A O'Halloran, Elizaveta Kalaidina, Wooseob Kim, Aaron J Schmitz, Julian Q Zhou, Tingting Lei, Mahima Thapa, Rita E Chen, James Brett Case, Fatima Amanat, Adriana M Rauseo, Alem Haile, Xuping Xie, Michael K Klebert, Teresa Suessen, William D Middleton, Pei-Yong Shi, Florian Krammer, Sharlene A Teefey, Michael S. Diamond, Rachel M Presti, Ali H Ellebedy
SARS-CoV-2 mRNA vaccines induce persistent human germinal centre responses. Nature 596 (7870) (2021)
Delphine C Malherbe, Drishya Kurup, Christoph Wirblich, Adam J Ronk, Chad E Mire, Natalia Kuzmina, Noor Shaik, Sivakumar Periasamy, Matthew A Hyde, Julie M Williams, Pei-Yong Shi, Matthias J Schnell, Alexander Bukreyev
A single dose of replication-competent VSV-vectored vaccine expressing SARS-CoV-2 S1 protects against virus replication in a hamster model of severe COVID-19. NPJ vaccines 6 (1) (2021)
Xuping Xie, Kumari G Lokugamage, Xianwen Zhang, Michelle N Vu, Antonio E Muruato, Vineet D Menachery, Pei-Yong Shi
Engineering SARS-CoV-2 using a reverse genetic system. Nature protocols 16 (3) (2021)
Rita E Chen, Xianwen Zhang, James Brett Case, Emma S Winkler, Yang Liu, Laura A VanBlargan, Jianying Liu, John M Errico, Xuping Xie, Naveen Chandra Suryadevara, Pavlo Gilchuk, Seth J Zost, Stephen Tahan, Lindsay Droit, Jackson S Turner, Wooseob Kim, Aaron J Schmitz, Mahima Thapa, David Wang, Adrianus C M Boon, Rachel M Presti, Jane A O'Halloran, Alfred Hyoungju Kim, Parakkal Deepak, Dora Pinto, Daved H Fremont, James E Crowe, Davide Corti, Herbert W Virgin, Ali H Ellebedy, Pei-Yong Shi, Michael S. Diamond
Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies. Nature medicine 27 (4) (2021)
Zhiqiang Ku, Xuping Xie, Edgar Davidson, Xiaohua Ye, Hang Su, Vineet D Menachery, Yize Li, Zihao Yuan, Xianwen Zhang, Antonio E Muruato, Ariadna Grinyo I Escuer, Breanna Tyrell, Kyle Doolan, Benjamin J Doranz, Daniel Wrapp, Paul F Bates, Jason S Mclellan, Susan R Weiss, Ningyan Zhang, Pei-Yong Shi, Zhiqiang An
Author Correction: Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape. Nature communications 12 (1) (2021)
Bryan A Johnson, Xuping Xie, Adam L Bailey, Birte Kalveram, Kumari G Lokugamage, Antonio Muruato, Jing Zou, Xianwen Zhang, Terry Juelich, Jennifer K Smith, Lihong Zhang, Nathen Bopp, Craig Schindewolf, Michelle Vu, Abigail Vanderheiden, Emma S Winkler, Daniele M Swetnam, Jessica A Plante, Patricia Aguilar, Kenneth S Plante, Vsevolod Popov, Benhur Lee, Scott C Weaver, Mehul S Suthar, Andrew L Routh, Ping Ren, Zhiqiang Ku, Zhiqiang An, Kari Debbink, Michael S Diamond, Pei-Yong Shi, Alexander N Freiberg, Vineet D Menachery
Loss of furin cleavage site attenuates SARS-CoV-2 pathogenesis. Nature 591 (7849) (2021)
Zengguo Cao, Hongjie Xia, Ricardo Rajsbaum, Xianzhu Xia, Hualei Wang, Pei-Yong Shi
Ubiquitination of SARS-CoV-2 ORF7a promotes antagonism of interferon response. Cellular & molecular immunology 18 (3) (2021)
Michael S. Diamond, Rita Chen, Emma Winkler, James Brett Case, Ishmael Aziati, Traci Bricker, Astha Joshi, Tamarand Darling, Baoling Ying, John Errico, Swathi Shrihari, Laura VanBlargan, Xuping Xie, Pavlo Gilchuk, Seth J Zost, Lindsay Droit, Zhuoming Liu, Spencer Stumpf, David Wang, Scott Handley, W Stine, Pei-Yong Shi, Miguel Garcia-Knight, Raul Andino, Charles Y Chiu, Ali H Ellebedy, Daved H Fremont, Sean P J Whelan, James E Crowe, Lisa Purcell, Davide Corti, Adrianus C M Boon
In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains. Research square (2021)
Uğur Şahin, Alexander Muik, Isabel Vogler, Evelyna Derhovanessian, Lena M Kranz, Mathias Vormehr, Jasmin Quandt, Nicole Bidmon, Alexander Ulges, Alina Baum, Kristen E Pascal, Daniel Maurus, Sebastian Brachtendorf, Verena Lörks, Julian Sikorski, Peter Koch, Rolf Hilker, Dirk Becker, Ann-Kathrin Eller, Jan Grützner, Manuel Tonigold, Carsten Boesler, Corinna Rosenbaum, Ludwig Heesen, Marie-Cristine Kühnle, Asaf Poran, Jesse Z Dong, Ulrich Luxemburger, Alexandra Kemmer-Brück, David Langer, Martin Bexon, Stefanie Bolte, Tania Palanche, Armin Schultz, Sybille Baumann, Azita J Mahiny, Gábor Boros, Jonas Reinholz, Gábor Tamás Szabó, Katalin Karikó, Pei-Yong Shi, Camila R Fontes-Garfias, John L Perez, Mark Cutler, David Cooper, Christos A Kyratsous, Philip R Dormitzer, Kathrin U Jansen, Özlem Türeci
BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in humans. Nature 595 (7868) (2021)
Xuping Xie, Antonio E Muruato, Xianwen Zhang, Kumari G Lokugamage, Camila R Fontes-Garfias, Jing Zou, Jianying Liu, Ping Ren, Mini Balakrishnan, Tomas Cihlar, Chien-Te Kent Tseng, Shinji Makino, Vineet D Menachery, John P Bilello, Pei-Yong Shi
Author Correction: A nanoluciferase SARS-CoV-2 for rapid neutralization testing and screening of anti-infective drugs for COVID-19. Nature communications 12 (1) (2021)
Annette B Vogel, Isis Kanevsky, Ye Che, Kena A Swanson, Alexander Muik, Mathias Vormehr, Lena M Kranz, Kerstin C Walzer, Stephanie Hein, Alptekin Güler, Jakob Loschko, Mohan S Maddur, Ayuko Ota-Setlik, Kristin Tompkins, Journey Cole, Bonny G Lui, Thomas Ziegenhals, Arianne Plaschke, David Eisel, Sarah C Dany, Stephanie Fesser, Stephanie Erbar, Ferdia Bates, Diana Schneider, Bernadette Jesionek, Bianca Sänger, Ann-Kathrin Wallisch, Yvonne Feuchter, Hanna Junginger, Stefanie A Krumm, André P Heinen, Petra Adams-Quack, Julia Schlereth, Stefan Schille, Christoph Kröner, Ramón de la Caridad Güimil Garcia, Thomas Hiller, Leyla Fischer, Rani S Sellers, Shambhunath Choudhary, Olga Gonzalez, Fulvia Vascotto, Matthew R Gutman, Jane A Fontenot, Shannan Hall-Ursone, Kathleen Brasky, Matthew C Griffor, Seungil Han, Andreas A H Su, Joshua A Lees, Nicole L Nedoma, Ellene H Mashalidis, Parag V Sahasrabudhe, Charles Y Tan, Danka Pavliakova, Guy Singh, Camila R Fontes-Garfias, Michael Pride, Ingrid L Scully, Tara Ciolino, Jennifer Obregon, Michal Gazi, Ricardo Carrion, Kendra J Alfson, Warren V Kalina, Deepak Kaushal, Pei-Yong Shi, Thorsten Klamp, Corinna Rosenbaum, Andreas N Kuhn, Özlem Türeci, Philip R Dormitzer, Kathrin U Jansen, Ugur Sahin
BNT162b vaccines protect rhesus macaques from SARS-CoV-2. Nature 592 (7853) (2021)
Zhiqiang Ku, Xuping Xie, Paul R Hinton, Xinli Liu, Xiaohua Ye, Antonio E Muruato, Dean C Ng, Sujit Biswas, Jing Zou, Yang Liu, Deepal Pandya, Vineet D Menachery, Sachi Rahman, Yu-An Cao, Hui Deng, Wei Xiong, Kevin B Carlin, Junquan Liu, Hang Su, Elizabeth J Haanes, Bruce A Keyt, Ningyan Zhang, Stephen F Carroll, Pei-Yong Shi, Zhiqiang An
Nasal delivery of an IgM offers broad protection from SARS-CoV-2 variants. Nature 595 (7869) (2021)
Zhiqiang Ku, Xuping Xie, Edgar Davidson, Xiaohua Ye, Hang Su, Vineet D Menachery, Yize Li, Zihao Yuan, Xianwen Zhang, Antonio E Muruato, Ariadna Grinyo I Escuer, Breanna Tyrell, Kyle Doolan, Benjamin J Doranz, Daniel Wrapp, Paul F Bates, Jason S Mclellan, Susan R Weiss, Ningyan Zhang, Pei-Yong Shi, Zhiqiang An
Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape. Nature communications 12 (1) (2021)
Xuping Xie, Yang Liu, Jianying Liu, Xianwen Zhang, Jing Zou, Camila R Fontes-Garfias, Hongjie Xia, Kena A Swanson, Mark Cutler, David Cooper, Vineet D Menachery, Scott C Weaver, Philip R Dormitzer, Pei-Yong Shi
Neutralization of SARS-CoV-2 spike 69/70 deletion, E484K and N501Y variants by BNT162b2 vaccine-elicited sera. Nature medicine 27 (4) (2021)
Awadalkareem Adam, Camila R Fontes-Garfias, Vanessa V Sarathy, Yang Liu, Huanle Luo, Emily Davis, Wenqian Li, Antonio E Muruato, Binbin Wang, Renat Ahatov, Yoseph Mahmoud, Chao Shan, Samantha R Osman, Steven G Widen, Alan D T Barrett, Pei-Yong Shi, Tian Wang
A genetically stable Zika virus vaccine candidate protects mice against virus infection and vertical transmission. NPJ vaccines 6 (1) (2021)
Antonio E Muruato, Camila R Fontes-Garfias, Ping Ren, Mariano A Garcia-Blanco, Vineet D Menachery, Xuping Xie, Pei-Yong Shi
Author Correction: A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation. Nature communications 12 (1) (2021)
Pei-Yong Shi, Xuping Xie, Jing Zou, Camila Fontes-Garfias, Hongjie Xia, Kena Swanson, Mark Cutler, David Cooper, Vineet Menachery, Scott C Weaver, Philip Dormitzer
Neutralization of N501Y mutant SARS-CoV-2 by BNT162b2 vaccine-elicited sera. Research square (2021)
Chaojie Zhong, Hongjie Xia, Awadalkareem Adam, Binbin Wang, Renee L Hajnik, Yuejin Liang, Grace H Rafael, Jing Zou, Xiaofang Wang, Jiaren Sun, Lynn Soong, Alan D T Barrett, Scott C Weaver, Pei-Yong Shi, Tian Wang, Haitao Hu
Mucosal vaccination induces protection against SARS-CoV-2 in the absence of detectable neutralizing antibodies. NPJ vaccines 6 (1) (2021)
Jianying Liu, Yang Liu, Chao Shan, Bruno T D Nunes, Ruimei Yun, Sherry L Haller, Grace H Rafael, Sasha R Azar, Clark R Andersen, Kenneth S Plante, Nikos Vasilakis, Pei-Yong Shi, Scott C Weaver
Role of mutational reversions and fitness restoration in Zika virus spread to the Americas. Nature communications 12 (1) (2021)
Jing Zou, Xuping Xie, Camila R Fontes-Garfias, Kena A Swanson, Isis Kanevsky, Kristin Tompkins, Mark Cutler, David Cooper, Philip R Dormitzer, Pei-Yong Shi
The effect of SARS-CoV-2 D614G mutation on BNT162b2 vaccine-elicited neutralization. NPJ vaccines 6 (1) (2021)
Michael Diamond, Rita Chen, Xuping Xie, James Brett Case, Xianwen Zhang, Laura VanBlargan, Yang Liu, Jianying Liu, John Errico, Emma Winkler, Naveenchandra Suryadevara, Stephen Tahan, Jackson Turner, Wooseob Kim, Aaron J Schmitz, Mahima Thapa, David Wang, Andrianus Boon, Dora Pinto, Rachel Presti, Jane O'Halloran, Alfred Kim, Parakkal Deepak, Daved H Fremont, Davide Corti, Herbert W Virgin, James E Crowe, Lindsay Droit, Ali H Ellebedy, Pei-Yong Shi, Pavlo Gilchuk
SARS-CoV-2 variants show resistance to neutralization by many monoclonal and serum-derived polyclonal antibodies. Research square (2021)
Jessica A Plante, Yang Liu, Jianying Liu, Hongjie Xia, Bryan A Johnson, Kumari G Lokugamage, Xianwen Zhang, Antonio E Muruato, Jing Zou, Camila R Fontes-Garfias, Divya Mirchandani, Dionna Scharton, John P Bilello, Zhiqiang Ku, Zhiqiang An, Birte Kalveram, Alexander N Freiberg, Vineet D Menachery, Xuping Xie, Kenneth S Plante, Scott C Weaver, Pei-Yong Shi
Spike mutation D614G alters SARS-CoV-2 fitness. Nature 592 (7852) (2020)
Natalie D Collins, Chao Shan, Bruno Tardelli Diniz Nunes, Steven G Widen, Pei-Yong Shi, Alan D T Barrett, Vanessa V Sarathy
Using Next Generation Sequencing to Study the Genetic Diversity of Candidate Live Attenuated Zika Vaccines. Vaccines 8 (2) (2020)
Mark J Mulligan, Kirsten E Lyke, Nicholas Kitchin, Judith Absalon, Alejandra Gurtman, Stephen Lockhart, Kathleen Neuzil, Vanessa Raabe, Ruth Bailey, Kena A Swanson, Ping Li, Kenneth Koury, Warren Kalina, David Cooper, Camila Fontes-Garfias, Pei-Yong Shi, Özlem Türeci, Kristin R Tompkins, Edward E Walsh, Robert Frenck, Ann R Falsey, Philip R Dormitzer, William C Gruber, Uğur Şahin, Kathrin U Jansen
Phase I/II study of COVID-19 RNA vaccine BNT162b1 in adults. Nature 586 (7830) (2020)
Uğur Şahin, Alexander Muik, Evelyna Derhovanessian, Isabel Vogler, Lena M Kranz, Mathias Vormehr, Alina Baum, Kristen E Pascal, Jasmin Quandt, Daniel Maurus, Sebastian Brachtendorf, Verena Lörks, Julian Sikorski, Rolf Hilker, Dirk Becker, Ann-Kathrin Eller, Jan Grützner, Carsten Boesler, Corinna Rosenbaum, Marie-Cristine Kühnle, Ulrich Luxemburger, Alexandra Kemmer-Brück, David Langer, Martin Bexon, Stefanie Bolte, Katalin Karikó, Tania Palanche, Boris Fischer, Armin Schultz, Pei-Yong Shi, Camila Fontes-Garfias, John L Perez, Kena A Swanson, Jakob Loschko, Ingrid L Scully, Mark Cutler, Warren Kalina, Christos A Kyratsous, David Cooper, Philip R Dormitzer, Kathrin U Jansen, Özlem Türeci
COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses. Nature 586 (7830) (2020)
Pei-Yong Shi, Jessica Plante, Yang Liu, Jianying Liu, Hongjie Xia, Bryan Johnson, Kumari Lokugamage, Xianwen Zhang, Antonio Muruato, Jing Zou, Camila Fontes-Garfias, Divya Mirchandani, Dionna Scharton, Birte Kalveram, John Bilello, Zhiqiang Ku, Zhiqiang An, Alexander Freiberg, Vineet Menachery, Xuping Xie, Kenneth Plante, Scott C Weaver
Spike mutation D614G alters SARS-CoV-2 fitness and neutralization susceptibility. Research square (2020)
Xuping Xie, Antonio E Muruato, Xianwen Zhang, Kumari G Lokugamage, Camila R Fontes-Garfias, Jing Zou, Jianying Liu, Ping Ren, Mini Balakrishnan, Tomas Cihlar, Chien-Te Kent Tseng, Shinji Makino, Vineet D Menachery, John P Bilello, Pei-Yong Shi
A nanoluciferase SARS-CoV-2 for rapid neutralization testing and screening of anti-infective drugs for COVID-19. Nature communications 11 (1) (2020)
Antonio E Muruato, Camila R Fontes-Garfias, Ping Ren, Mariano A Garcia-Blanco, Vineet D Menachery, Xuping Xie, Pei-Yong Shi
A high-throughput neutralizing antibody assay for COVID-19 diagnosis and vaccine evaluation. Nature communications 11 (1) (2020)
Xin-Ni Lim, Chao Shan, Jan K Marzinek, Hongping Dong, Thiam-Seng Ng, Justin S G Ooi, Guntur Fibriansah, Jiaqi Wang, Chandra Shekhar Verma, Peter John Bond, Pei-Yong Shi, Shee-Mei Lok
Molecular basis of dengue virus serotype 2 morphological switch from 29°C to 37°C. PLoS pathogens 15 (9) (2019)
Ling Yuan, Xing-Yao Huang, Zhong-Yu Liu, Feng Zhang, Xing-Liang Zhu, Jiu-Yang Yu, Xue Ji, Yan-Peng Xu, Guanghui Li, Cui Li, Hong-Jiang Wang, Yong-Qiang Deng, Menghua Wu, Meng-Li Cheng, Qing Ye, Dong-Yang Xie, Xiao-Feng Li, Xiangxi Wang, Weifeng Shi, Bao-Yang Hu, Pei-Yong Shi, Zhiheng Xu, Cheng-Feng Qin
A single mutation in the prM protein of Zika virus contributes to fetal microcephaly. Science (New York, N.Y.) 358 (6365) (2017)
Siew Pheng Lim, Christian Guy Noble, Cheah Chen Seh, Tingjin Sherryl Soh, Abbas El Sahili, Grace Kar Yarn Chan, Julien Lescar, Rishi Arora, Timothy Benson, Shahul Nilar, Ujjini Manjunatha, Kah Fei Wan, Hongping Dong, Xuping Xie, Pei-Yong Shi, Fumiaki Yokokawa
Potent Allosteric Dengue Virus NS5 Polymerase Inhibitors: Mechanism of Action and Resistance Profiling. PLoS pathogens 12 (8) (2016)