Peter C Dedon (Peter Dedon)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 91

Top Topics

Pseudomonas Aeruginosa

Mass Spectrometry

Helicobacter Pylori Infection

Top Venues

bioRxiv : the preprint server for biology

Nature microbiology

Science (New York, N.Y.)

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Yifeng Yuan, Michael S DeMott, Shane R Byrne, null null, Peter C Dedon
PT-seq: A method for metagenomic analysis of phosphorothioate epigenetics in complex microbial communities. bioRxiv : the preprint server for biology (2024)
Nick K Davis, Yok-Hian Chionh, Megan E McBee, Fabian Hia, Duanduan Ma, Liang Cui, Mariam Lucila Sharaf, Weiling Maggie Cai, Watthanachai Jumpathong, Stuart S Levine, Sylvie Alonso, Peter C Dedon
Facile metabolic reprogramming distinguishes mycobacterial adaptation to hypoxia and starvation: ketosis drives starvation-induced persistence in M. bovis BCG. Communications biology 7 (1) (2024)
Jun Yu Ip, Indrik Wijaya, Li Ting Lee, Yuhua Lim, Deryn En-Jie Teoh, Cheryl Siew Choo Chan, Liang Cui, Thomas J Begley, Peter C Dedon, Huili Guo
ROS-induced translational regulation-through spatiotemporal differences in codon recognition-is a key driver of brown adipogenesis. bioRxiv : the preprint server for biology (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Samia Quaiyum, Jingjing Sun, Virginie Marchand, Guangxin Sun, Colbie J Reed, Yuri Motorin, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Mapping the tRNA Modification Landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse. bioRxiv : the preprint server for biology (2024)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2024)
Yifeng Yuan, Michael S DeMott, Shane R Byrne, null null, Peter C Dedon
PT-seq: A method for metagenomic analysis of phosphorothioate epigenetics in complex microbial communities. bioRxiv : the preprint server for biology (2024)
Michelle M Mitchener, Thomas J Begley, Peter C Dedon
Correction to "Molecular Coping Mechanisms: Reprogramming tRNAs to Regulate Codon-Biased Translation of Stress Response Proteins". Accounts of chemical research (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology (2024)
Jingjing Sun, Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling, Seetharamsing Balamkundu, null Dwijapriya, Hazel Chay Suen Suen, Valérie de Crécy-Lagard, Agnieszka Dziergowska, Peter C Dedon
tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa . bioRxiv : the preprint server for biology (2024)
Nick K Davis, Yok-Hian Chionh, Megan E McBee, Fabian Hia, Duanduan Ma, Liang Cui, Mariam Lucila Sharaf, Weiling Maggie Cai, Watthanachai Jumpathong, Stuart S Levine, Sylvie Alonso, Peter C Dedon
Facile metabolic reprogramming distinguishes mycobacterial adaptation to hypoxia and starvation: ketosis drives starvation-induced persistence in M. bovis BCG. Communications biology 7 (1) (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology 9 (6) (2024)
Shane R Byrne, Michael S DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G Fox, Eric J Alm, Peter C Dedon
Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome. bioRxiv : the preprint server for biology (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Sherif Rashad, Shadi Al-Mesitef, Abdulrahman Mousa, Yuan Zhou, Daisuke Ando, Guangxin Sun, Tomoko Fukuuchi, Yuko Iwasaki, Jingdong Xiang, Shane R Byrne, Jingjing Sun, Masamitsu Maekawa, Daisuke Saigusa, Thomas J Begley, Peter C Dedon, Kuniyasu Niizuma
Translational response to mitochondrial stresses is orchestrated by tRNA modifications. bioRxiv : the preprint server for biology (2024)
Yifeng Yuan, Michael S DeMott, Shane R Byrne, Katia Flores, Mathilde Poyet, Mathieu Groussin, null null, Brittany Berdy, Laurie Comstock, Eric J Alm, Peter C Dedon
Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. bioRxiv : the preprint server for biology (2024)
Wanlin Guo, Hong Ching Kwok, Stephen M Griffith, Stefan Nagl, Dragan Milovanović, Miljana Pavlović, Nikola M Pavlović, Jian Zhen Yu, Peter C Dedon, Wan Chan
Combustion-Derived Pollutants Linked with Kidney Disease in Low-Lying Flood-Affected Areas in the Balkans. Environmental science & technology (2024)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology (2024)
Wanlin Guo, Hong Ching Kwok, Stephen M Griffith, Stefan Nagl, Dragan Milovanović, Miljana Pavlović, Nikola M Pavlović, Jian Zhen Yu, Peter C Dedon, Wan Chan
Combustion-Derived Pollutants Linked with Kidney Disease in Low-Lying Flood-Affected Areas in the Balkans. Environmental science & technology 58 (26) (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology 9 (6) (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Sherif Rashad, Shadi Al-Mesitef, Abdulrahman Mousa, Yuan Zhou, Daisuke Ando, Guangxin Sun, Tomoko Fukuuchi, Yuko Iwasaki, Jingdong Xiang, Shane R Byrne, Jingjing Sun, Masamitsu Maekawa, Daisuke Saigusa, Thomas J Begley, Peter C Dedon, Kuniyasu Niizuma
Translational response to mitochondrial stresses is orchestrated by tRNA modifications. bioRxiv : the preprint server for biology (2024)
Michelle M Mitchener, Thomas J Begley, Peter C Dedon
Correction to "Molecular Coping Mechanisms: Reprogramming tRNAs to Regulate Codon-Biased Translation of Stress Response Proteins". Accounts of chemical research 57 (16) (2024)
Jingjing Sun, Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling, Seetharamsing Balamkundu, null Dwijapriya, Hazel Chay Suen Suen, Valérie de Crécy-Lagard, Agnieszka Dziergowska, Peter C Dedon
tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa . bioRxiv : the preprint server for biology (2024)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology 9 (6) (2024)
Shane R Byrne, Michael S DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G Fox, Eric J Alm, Peter C Dedon
Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome. bioRxiv : the preprint server for biology (2024)
Michelle M Mitchener, Thomas J Begley, Peter C Dedon
Correction to "Molecular Coping Mechanisms: Reprogramming tRNAs to Regulate Codon-Biased Translation of Stress Response Proteins". Accounts of chemical research 57 (16) (2024)
Yifeng Yuan, Michael S DeMott, Shane R Byrne, Katia Flores, Mathilde Poyet, Mathieu Groussin, Global Microbiome Conservancy, Brittany Berdy, Laurie Comstock, Eric J Alm, Peter C Dedon
Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. bioRxiv : the preprint server for biology (2024)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2024)
Peiying Ho, Linh Chi Dam, Wei Ren Ryanna Koh, Rui Si Nai, Qian Hui Nah, Faeqa Binte Muhammad Rajaie Fizla, Chia Ching Chan, Thet Tun Aung, Shin Giek Goh, Fang You, Zhining Lim, Ming Guang Koh, Michael Demott, Yann Felix Boucher, Benoît Malleret, Karina Yew-Hoong Gin, Peter C Dedon, Wilfried Moreira
Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa . International journal of molecular sciences 25 (13) (2024)
Sophie Giguère, Xuesong Wang, Sabrina Huber, Liling Xu, John Warner, Stephanie R Weldon, Jennifer Hu, Quynh Anh Phan, Katie Tumang, Thavaleak Prum, Duanduan Ma, Kathrin H Kirsch, Usha Nair, Peter C Dedon, Facundo D Batista
Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand. Science (New York, N.Y.) 383 (6679) (2024)
Shane R Byrne, Michael S DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G Fox, Eric J Alm, Peter C Dedon
Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome. bioRxiv : the preprint server for biology (2024)
Jennifer L Small-Saunders, Ameya Sinha, Talia S Bloxham, Laura M Hagenah, Guangxin Sun, Peter Rainer Preiser, Peter C Dedon, David A Fidock
tRNA modification reprogramming contributes to artemisinin resistance in Plasmodium falciparum. Nature microbiology 9 (6) (2024)
Samia Quaiyum, Jingjing Sun, Virginie Marchand, Guangxin Sun, Colbie J Reed, Yuri Motorin, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Mapping the tRNA Modification Landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse. bioRxiv : the preprint server for biology (2024)
Jingjing Sun, Junzhou Wu, Yifeng Yuan, Leon Fan, Wei Lin Patrina Chua, Yan Han Sharon Ling, Seetharamsing Balamkundu, Dwija Priya, Hazel Chay Suen Suen, Valérie de Crécy-Lagard, Agnieszka Dziergowska, Peter C Dedon
tRNA modification profiling reveals epitranscriptome regulatory networks in Pseudomonas aeruginosa . bioRxiv : the preprint server for biology (2024)
Nick K Davis, Yok-Hian Chionh, Megan E McBee, Fabian Hia, Duanduan Ma, Liang Cui, Mariam Lucila Sharaf, Weiling Maggie Cai, Watthanachai Jumpathong, Stuart S Levine, Sylvie Alonso, Peter C Dedon
Facile metabolic reprogramming distinguishes mycobacterial adaptation to hypoxia and starvation: ketosis drives starvation-induced persistence in M. bovis BCG. Communications biology 7 (1) (2024)
Peiying Ho, Linh Chi Dam, Wei Ren Ryanna Koh, Rui Si Nai, Qian Hui Nah, Faeqa Binte Muhammad Rajaie Fizla, Chia Ching Chan, Thet Tun Aung, Shin Giek Goh, Fang You, Zhining Lim, Ming Guang Koh, Michael Demott, Yann Felix Boucher, Benoît Malleret, Karina Yew-Hoong Gin, Peter C Dedon, Wilfried Moreira
Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa . International journal of molecular sciences 25 (13) (2024)
Javier Encinar Del Dedo, Rafael López-San Segundo, Alicia Vázquez-Bolado, Jingjing Sun, Natalia García-Blanco, M Belén Suárez, Patricia Garcia, Pauline Tricquet, Jun-Song Chen, Peter C Dedon, Kathleen L Gould, Elena Hidalgo, Damien Hermand, Sergio Moreno
The Greatwall-Endosulfine-PP2A/B55 pathway controls entry into quiescence by promoting translation of Elongator-tuneable transcripts. Research square (2023)
Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Troy A Stich, Peter C Dedon, Patricia C Dos Santos, Valérie de Crécy-Lagard
Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria. bioRxiv : the preprint server for biology (2023)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2023)
Boon Chong Goh, Simon Larsson, Linh Chi Dam, Yan Han Sharon Ling, Wei Lin Patrina Chua, R Abirami, Samsher Singh, Jun Long Ernest Ong, Jeanette W P Teo, Peiying Ho, Philip W Ingham, Kevin Pethe, Peter C Dedon
Rifaximin potentiates clarithromycin against Mycobacterium abscessus in vitro and in zebrafish. JAC-antimicrobial resistance 5 (3) (2023)
Lulu Jiang, Rebecca Roberts, Melissa Wong, Lushuang Zhang, Chelsea Joy Webber, Alper Kilci, Matthew Jenkins, Guangxin Sun, Sherif Rashad, Jingjing Sun, Peter C Dedon, Sarah Anne Daley, Weiming Xia, Alejandro Rondón Ortiz, Luke Dorrian, Takashi Saito, Takaomi C Saido, Benjamin Wolozin
Accumulation of m 6 A exhibits stronger correlation with MAPT than β-amyloid pathology in an APP NL-G-F /MAPT P301S mouse model of Alzheimer's disease. bioRxiv : the preprint server for biology (2023)
Catarina Rosa, Parul Singh, Patty Chen, Ameya Sinha, Aurélie Claës, Peter Rainer Preiser, Peter C Dedon, Sebastian Baumgarten, Artur Scherf, Jessica M Bryant
Cohesin contributes to transcriptional repression of stage-specific genes in the human malaria parasite. EMBO reports (2023)
Boon Chong Goh, Simon Larsson, Linh Chi Dam, Yan Han Sharon Ling, Wei Lin Patrina Chua, R Abirami, Samsher Singh, Jun Long Ernest Ong, Jeanette W P Teo, Peiying Ho, Philip W Ingham, Kevin Pethe, Peter C Dedon
Rifaximin potentiates clarithromycin against Mycobacterium abscessus in vitro and in zebrafish. JAC-antimicrobial resistance 5 (3) (2023)
Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Troy A Stich, Peter C Dedon, Patricia C Dos Santos, Valérie de Crécy-Lagard
Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria. bioRxiv : the preprint server for biology (2023)
Samia Quaiyum, Yifeng Yuan, Guangxin Sun, R M Madhushi N Ratnayake, Geoffrey Hutinet, Peter C Dedon, Michael F Minnick, Valérie de Crécy-Lagard
Queuosine Salvage in Bartonella henselae Houston 1: A Unique Evolutionary Path. bioRxiv : the preprint server for biology (2023)
Axel Guilbaud, Farzan Ghanegolmohammadi, Yijun Wang, Jiapeng Leng, Alexander Kreymerman, Jacqueline Gamboa Varela, Jessica Garbern, Hannah Elwell, Fang Cao, Elisabeth M Ricci-Blair, Cui Liang, Seetharamsing Balamkundu, Charles Vidoudez, Michael S DeMott, Kenneth Bedi, Kenneth B Margulies, David A Bennett, Abraham A Palmer, Amanda Barkley-Levenson, Richard T Lee, Peter C Dedon
Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans. Nucleic acids research (2023)
Cheryl Chan, Newman Siu Kwan Sze, Yuka Suzuki, Takayuki Ohira, Tsutomu Suzuki, Thomas J Begley, Peter C Dedon
Dengue virus exploits the host tRNA epitranscriptome to promote viral replication. bioRxiv : the preprint server for biology (2023)
Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Troy A Stich, Peter C Dedon, Patricia C Dos Santos, Valérie de Crécy-Lagard
Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria. bioRxiv : the preprint server for biology (2023)
Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Troy A Stich, Peter C Dedon, Patricia C Dos Santos, Valérie de Crécy-Lagard
Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria. bioRxiv : the preprint server for biology (2023)
Sergio Moreno, Javier Encinar Del Dedo, Rafael López-San Segundo, Alicia Vázquez-Bolado, Jingjing Sun, Natalia García-Blanco, M Belén Suárez, Patricia Garcia, Pauline Tricquet, Jun-Song Chen, Peter C Dedon, Kathleen Gould, Elena Hidalgo, Damien Hermand
The Greatwall-Endosulfine-PP2A/B55 pathway controls entry into quiescence by promoting translation of Elongator-tuneable transcripts. Research square (2023)
Samanthi Herath Gedara, Evan Wood, Andrew Gustafson, Cui Liang, Shr-Hau Hung, Joshua Savage, Phuc Phan, Amit Luthra, Valérie de Crécy-Lagard, Peter C Dedon, Manal A Swarjo, Dirk Iwata-Reuyl
7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system. Nucleic acids research (2023)
Boon Chong Goh, Simon Larsson, Linh Chi Dam, Yan Han Sharon Ling, Wei Lin Patrina Chua, R Abirami, Samsher Singh, Jun Long Ernest Ong, Jeanette W P Teo, Peiying Ho, Philip W Ingham, Kevin Pethe, Peter C Dedon
Rifaximin potentiates clarithromycin against Mycobacterium abscessus in vitro and in zebrafish. JAC-antimicrobial resistance 5 (3) (2023)
Nikoline S Olsen, Tue Kjærgaard Nielsen, Liang Cui, Peter C Dedon, Horst Neve, Lars Hestbjerg Hansen, Witold Kot
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro. Nucleic acids research (2023)
Michelle M Mitchener, Thomas J Begley, Peter C Dedon
Molecular Coping Mechanisms: Reprogramming tRNAs To Regulate Codon-Biased Translation of Stress Response Proteins. Accounts of chemical research (2023)
Jin Wang, Bing Liang Alvin Chew, Yong Lai, Hongping Dong, Luang Xu, Yu Liu, Xin-Yuan Fu, Zhenguo Lin, Pei-Yong Shi, Timothy K Lu, Dahai Luo, Samie R Jaffrey, Peter C Dedon
A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome. Nature protocols (2023)
Marshall Jaroch, Guangxin Sun, Ho-Ching Tiffany Tsui, Colbie Reed, Jinjing Sun, Marko Jörg, Malcolm E Winkler, Kelly C Rice, Troy A Stich, Peter C Dedon, Patricia C Dos Santos, Valérie de Crécy-Lagard
Alternate routes to mnm 5 s 2 U synthesis in Gram-positive bacteria. bioRxiv : the preprint server for biology (2023)
Brandon Wilbanks, Keenan Pearson, Shane R Byrne, Laura B Bickart, Peter C Dedon, Louis James Maher Iii
DNA Modifications Enabling Proximity Biotinylation. Bioconjugate chemistry (2023)
Wei Lin Lee, Ameya Sinha, Ling Ning Lam, Hooi Linn Loo, Jiaqi Liang, Peiying Ho, Liang Cui, Cheryl Siew Choo Chan, Thomas Begley, Kimberly Ann Kline, Peter C Dedon
An RNA modification enzyme directly senses reactive oxygen species for translational regulation in Enterococcus faecalis. Nature communications 14 (1) (2023)
Leticia Pollo-Oliveira, Nick K Davis, Intekhab Hossain, Peiying Ho, Yifeng Yuan, Pedro Salguero, Cécile Pereira, Shane R Byrne, Jiapeng Leng, Melody Sze, Crysten E Blaby-Haas, Agnieszka Sekowska, Alvaro Montoya, Thomas J Begley, Antoine Danchin, Daniel P Aalberts, Alexander Angerhofer, John F Hunt, Ana Conesa, Peter C Dedon, Valérie de Crécy-Lagard
The absence of the queuosine tRNA modification leads to pleiotropic phenotypes revealing perturbations of metal and oxidative stress homeostasis in Escherichia coli K12. Metallomics : integrated biometal science 14 (9) (2022)
Lotem Sarid, Jingjing Sun, Jurairat Chittrakanwong, Meirav Trebicz-Geffen, Jun Ye, Peter C Dedon, Serge Ankri
Queuine Salvaging in the Human Parasite Entamoeba histolytica . Cells 11 (16) (2022)
Sabrina M Huber, Ulrike Begley, Anwesha Sarkar, William Gasperi, Evan T Davis, Vasudha Surampudi, May Lee, Juan Andres Melendez, Peter C Dedon, Thomas J Begley
Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the human tRNA epitranscriptome. Proceedings of the National Academy of Sciences of the United States of America 119 (38) (2022)
Satoshi Kimura, Veerasak Srisuknimit, Kacie L McCarty, Peter C Dedon, Philip J Kranzusch, Matthew Kaden Waldor
Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine. Nature communications 13 (1) (2022)
Jessica M Bryant, Sebastian Baumgarten, Florent Dingli, Damarys Loew, Ameya Sinha, Aurélie Claës, Peter Rainer Preiser, Peter C Dedon, Artur Scherf
Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasite. Molecular systems biology 16 (8) (2021)
Ameya Sinha, Sebastian Baumgarten, Amy Distiller, Emma McHugh, Patty Chen, Meetali Singh, Jessica M Bryant, Jiaqi Liang, Germano Cecere, Peter C Dedon, Peter Rainer Preiser, Stuart A Ralph, Artur Scherf
Functional Characterization of the m6A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. mBio 12 (2) (2021)
Monika Šimoliūnienė, Emilija Žukauskienė, Lidija Truncaitė, Liang Cui, Geoffrey Hutinet, Darius Kazlauskas, Algirdas Kaupinis, Martynas Skapas, Valérie de Crécy-Lagard, Peter C Dedon, Mindaugas Valius, Rolandas Meškys, Eugenijus Šimoliūnas
Pantoea Bacteriophage vB_PagS_MED16-A Siphovirus Containing a 2'-Deoxy-7-amido-7-deazaguanosine-Modified DNA. International journal of molecular sciences 22 (14) (2021)
Jennifer F Hu, Guo Rong Daniel Yim, Duanduan Ma, Sabrina M Huber, Nick Davis, Jo Marie Bacusmo, Sidney Vermeulen, Jieliang Zhou, Thomas J Begley, Michael S DeMott, Stuart S Levine, Valérie de Crécy-Lagard, Peter C Dedon, Bo Cao
Quantitative mapping of the cellular small RNA landscape with AQRNA-seq. Nature biotechnology 39 (8) (2021)
Leticia Pollo-Oliveira, Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Martinelli, Michael S DeMott, Thomas J Begley, Peter C Dedon, Raffael Schaffrath, Valérie de Crécy-Lagard
Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast. Biomolecules 10 (2) (2020)
Xiaolin Xiong, Geng Wu, Yue Wei, Liqiong Liu, Yubing Zhang, Rui Su, Xianyue Jiang, Mengxue Li, Haiyan Gao, Xihao Tian, Yizhou Zhang, Li Hu, Si Chen, You Tang, Susu Jiang, Ruolin Huang, Zhiqiang Li, Yunfu Wang, Zixin Deng, Jiawei Wang, Peter C Dedon, Shi Chen, Lian-Rong Wang
SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities. Nature microbiology 5 (7) (2020)
Joana F Tavares, Nick K Davis, Ana Poim, Andreia Reis, Stefanie Kellner, Inês Sousa, Ana Raquel Soares de Oliveira, Gabriela M R Moura, Peter C Dedon, Manuel Santos
tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast. RNA biology 18 (4) (2020)
Satoshi Kimura, Peter C Dedon, Matthew Kaden Waldor
Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications. Nature chemical biology 16 (9) (2020)
Yihua Sun, Lingxin Kong, Guojun Wu, Bo Cao, Xiaoyan Pang, Zixin Deng, Peter C Dedon, Chenhong Zhang, Delin You
DNA Phosphorothioate Modifications Are Widely Distributed in the Human Microbiome. Biomolecules 10 (8) (2020)
Sucheng Zhu, Tao Zheng, Lingxin Kong, Jinli Li, Bo Cao, Michael S DeMott, Yihua Sun, Ying Chen, Zixin Deng, Peter C Dedon, Delin You
Development of Methods Derived from Iodine-Induced Specific Cleavage for Identification and Quantitation of DNA Phosphorothioate Modifications. Biomolecules 10 (11) (2020)
Xiaobao Bi, Juan Yin, Dingpeng Zhang, Xiaohong Zhang, Seetharamsing Balamkundu, Julien Lescar, Peter C Dedon, James P Tam, Chuan Fa Liu
Tagging Transferrin Receptor with a Disulfide FRET Probe To Gauge the Redox State in Endosomal Compartments. Analytical chemistry 92 (18) (2020)
Andrea Leonardi, Nataliia Kovalchuk, Lei Yin, Lauren Endres, Sara Evke, Steven Nevins, Samuel Martin, Peter C Dedon, J Andres Melendez, Laura Van Winkle, Qing-Yu Zhang, Xinxin Ding, Thomas J Begley
The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental pollutant naphthalene. Epigenetics 15 (10) (2020)
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