Joshua Chiou (Josh Chiou)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 31

Top Venues

Diabetologia

Nature communications

Nature

Bioinformatics (Oxford, England)

University of California San Diego

University of California San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Sep 01 2016

United States

Ph.D. Candidate :: Biomedical Sciences

IncellDx, Inc. Sep 11 2015 - Aug 31 2016

United States

Development Scientist :: Research & Development

NASA Johnson Space Center Jun 15 2015 - Aug 23 2015

United States

Intern :: Microbiology

University of California Los Angeles Jan 06 2014 - Jun 12 2015

United States

Research Assistant :: Microbiology, Immunology, and Molecular Genetics

Education History

University of California San Diego Sep 01 2016

United States

PHD :: Biomedical Sciences

University of California Los Angeles Sep 11 2011 - Jun 14 2015

United States

BSC :: Microbiology, Immunology, and Molecular Genetics

Publications

Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Joren Sebastian Retel, Andreas Poehlmann, Joshua Chiou, Andreas Steffen, Djork-Arné Clevert
A fast machine learning dataloader for epigenetic tracks from BigWig files. Bioinformatics (Oxford, England) 40 (1) (2024)
Joren Sebastian Retel, Andreas Poehlmann, Joshua Chiou, Andreas Steffen, Djork-Arné Clevert
A fast machine learning dataloader for epigenetic tracks from BigWig files. Bioinformatics (Oxford, England) 40 (1) (2024)
Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Chirag Krishna, Joshua Chiou, Saori Sakaue, Joyce B Kang, Stephen M Christensen, Isac Lee, Melis Atalar Aksit, Hye In Kim, David von Schack, Soumya Raychaudhuri, Daniel Ziemek, Xinli Hu
The influence of HLA genetic variation on plasma protein expression. Nature communications 15 (1) (2024)
Joren Sebastian Retel, Andreas Poehlmann, Joshua Chiou, Andreas Steffen, Djork-Arné Clevert
A fast machine learning dataloader for epigenetic tracks from BigWig files. Bioinformatics (Oxford, England) 40 (1) (2024)
Victoria H Wu, Bryan S Yung, Farhoud Faraji, Robert Saddawi-Konefka, Zhiyong Wang, Alexander T Wenzel, Miranda J Song, Meghana S Pagadala, Lauren M Clubb, Joshua Chiou, Sanju Sinha, Marin Matic, Francesco Raimondi, Thomas S Hoang, Rebecca Berdeaux, Dario A A Vignali, Ramiro Iglesias-Bartolome, Hannah Carter, Eytan Ruppin, Jill P Mesirov, Jorge Silvio Gutkind
The GPCR-Gα s -PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure. Nature immunology (2023)
Benjamin B Sun, Joshua Chiou, Matthew Traylor, Christian Benner, Yi-Hsiang Hsu, Tom G Richardson, Praveen Surendran, Anubha Mahajan, Chloe Robins, Steven G Vasquez-Grinnell, Liping Hou, Erika M Kvikstad, Oliver S Burren, Jonathan Davitte, Kyle L Ferber, Christopher E Gillies, Åsa K Hedman, Sile Hu, Tinchi Lin, Rajesh Mikkilineni, Rion K Pendergrass, Corran Pickering, Bram Prins, Denis Baird, Chia-Yen Chen, Lucas D Ward, Aimee M Deaton, Samantha Welsh, Carissa M Willis, Nick Lehner, Matthias Arnold, Maria A Wörheide, Karsten Suhre, Gabi Kastenmüller, Anurag Sethi, Madeleine Cule, Anil Raj, null null, null null, null null, null null, null null, null null, null null, null null, null null, Lucy Burkitt-Gray, Eugene Melamud, Mary Helen Black, Eric B Fauman, Joanna M M Howson, Hyun Min Kang, Mark I McCarthy, Paul Nioi, Slavé Petrovski, Robert A Scott, Erin N Smith, Sandor Szalma, Dawn M Waterworth, Lyndon J Mitnaul, Joseph D Szustakowski, Bradford W Gibson, Melissa R Miller, Christopher D Whelan
Plasma proteomic associations with genetics and health in the UK Biobank. Nature (2023)
Gaowei Wang, Joshua Chiou, Chun Zeng, Michael Miller, Ileana Matta, Jee Yun Han, Nikita Kadakia, Mei-Lin Okino, Elisha Beebe, Medhavi Mallick, Joan Camunas-Soler, Theodore Dos Santos, Xiao-Qing Dai, Cara Ellis, Yan Hang, Seung K Kim, Patrick E MacDonald, Fouad R Kandeel, Sebastian Preissl, Kyle J Gaulton, Maike Sander
Integrating genetics with single-cell multiomic measurements across disease states identifies mechanisms of beta cell dysfunction in type 2 diabetes. Nature genetics (2023)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Hyunkyung Kim, Kenneth E Westerman, Kirk Smith, Joshua Chiou, Joanne B Cole, Timothy Majarian, Marcin von Grotthuss, Soo Heon Kwak, Jaegil Kim, Josep Maria Mercader, Jose C Florez, Kyle J Gaulton, Alisa K Manning, Miriam S Udler
High-throughput genetic clustering of type 2 diabetes loci reveals heterogeneous mechanistic pathways of metabolic disease. Diabetologia 66 (3) (2022)
Jian Yan, Yunjiang Qiu, André M Ribeiro Dos Santos, Yimeng Yin, Yang Eric Li, Nick Vinckier, Naoki Nariai, Paola Benaglio, Anugraha Raman, Xiaoyu Li, Shicai Fan, Joshua Chiou, Fulin Chen, Kelly A Frazer, Kyle J Gaulton, Bjoern Gaertner, Jussi Taipale, Bing Ren
Systematic analysis of binding of transcription factors to noncoding variants. Nature 591 (7848) (2021)
James D Hocker, Olivier B Poirion, Fugui Zhu, Justin Buchanan, Kai Zhang, Joshua Chiou, Tsui-Min Wang, Qingquan Zhang, Xiaomeng Hou, Yang Eric Li, Yanxiao Zhang, Elie N Farah, Allen Wang, Andrew D McCulloch, Kyle J Gaulton, Bing Ren, Neil C Chi, Sebastian Preissl
Cardiac cell type-specific gene regulatory programs and disease risk association. Science advances 7 (20) (2021)
Ryan J Geusz, Allen Wang, Joshua Chiou, Joseph J Lancman, Nichole Wetton, Samy Kefalopoulou, Jinzhao Wang, Yunjiang Qiu, Jian Yan, Anthony Aylward, Bing Ren, P Duc Si Dong, Kyle J Gaulton, Bjoern Gaertner
Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development. eLife 10 (2021)
Ryan J Geusz, Allen Wang, Dieter K Lam, Nicholas K Vinckier, Konstantinos-Dionysios Alysandratos, David A Roberts, Jinzhao Wang, Samy Kefalopoulou, Araceli Ramirez, Yunjiang Qiu, Joshua Chiou, Kyle J Gaulton, Bing Ren, Darrell N Kotton, Bjoern Gaertner
Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors. Nature communications 12 (1) (2021)
Anne Philippi, Sandra Heller, Ivan G Costa, Valérie Senée, Markus Breunig, Zhijian Li, Sungjin Kwon, Ronan Russell, Anett Illing, Qiong Lin, Meike Hohwieler, Anne Degavre, Pierre A Zalloua, Stefan Liebau, Michael K Schuster, Johannes Krumm, Xi Zhang, Ryan Geusz, Jacqueline R Benthuysen, Allen Wang, Joshua Chiou, Kyle J Gaulton, Heike Neubauer, Eric Simon, Thomas Klein, Martin Wagner, Gopika Nair, Céline Besse, Claire Dandine-Roulland, Robert Olaso, Jean-François Deleuze, Bernhard Kuster, Matthias Hebrok, Thomas Seufferlein, Bjoern Gaertner, Bernhard Otto Boehm, Franz Oswald, Marc Nicolino, Cécile Julier, Alexander Kleger
Mutations and variants of ONECUT1 in diabetes. Nature medicine 27 (11) (2021)
Joshua Chiou, Ryan J Geusz, Mei-Lin Okino, Jee Yun Han, Michael Miller, Rebecca Melton, Elisha Beebe, Paola Benaglio, Serina Huang, Katha Korgaonkar, Sandra Heller, Alexander Kleger, Sebastian Preissl, David U Gorkin, Maike Sander, Kyle J Gaulton
Interpreting type 1 diabetes risk with genetics and single-cell epigenomics. Nature 594 (7863) (2021)
Joshua Chiou, Chun Zeng, Zhang Cheng, Jee Yun Han, Michael Schlichting, Michael Miller, Robert Mendez, Serina Huang, Jinzhao Wang, Yinghui Sui, Allison Deogaygay, Mei-Lin Okino, Yunjiang Qiu, Ying Sun, Parul Kudtarkar, Rongxin Fang, Sebastian Preissl, Bjoern Gaertner, David U Gorkin, Kyle J Gaulton
Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk. Nature genetics 53 (4) (2021)
Yang Eric Li, Sebastian Preissl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Yunjiang Qiu, Olivier B Poirion, Bin Li, Joshua Chiou, Hanqing Liu, António Pinto-Duarte, Naoki Kubo, Xiaoyu Yang, Rongxin Fang, Xinxin Wang, Jee Yun Han, Jacinta Lucero, Yiming Yan, Michael Miller, Samantha Kuan, David Gorkin, Kyle J Gaulton, Yin Shen, Michael Nunn, Eran A Mukamel, M Margarita Behrens, Joseph R Ecker, Bing Ren
An atlas of gene regulatory elements in adult mouse cerebrum. Nature 598 (7879) (2021)
Anthony Aylward, Mei-Lin Okino, Paola Benaglio, Joshua Chiou, Elisha Beebe, Jose Andres Padilla, Sharlene Diep, Kyle J Gaulton
Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes. PLoS genetics 17 (5) (2021)
Allen Wang, Joshua Chiou, Olivier B Poirion, Justin Buchanan, Michael J Valdez, Jamie M Verheyden, Xiaomeng Hou, Parul Kudtarkar, Sharvari Narendra, Jacklyn M Newsome, Minzhe Guo, Dina A Faddah, Kai Zhang, Randee E Young, Justinn Barr, Eniko Sajti, Ravi Misra, Heidie Huyck, Lisa Rogers, Cory Poole, Jeffery A Whitsett, Gloria Pryhuber, Yan Xu, Kyle J Gaulton, Sebastian Preissl, Xin Sun, null null
Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes. eLife 9 (2020)
Qiong Zhang, Ti-Chun Chao, Veena S Patil, Yue Qin, Shashi Kant Tiwari, Joshua Chiou, Alexander Dobin, Chih-Ming Tsai, Zhonghan Li, Jason Dang, Shagun Gupta, Kevin Urdahl, Victor Nizet, Thomas R Gingeras, Kyle J Gaulton, Tariq M Rana
The long noncoding RNA ROCKI regulates inflammatory gene expression. The EMBO journal 38 (8) (2019)
Victoria Wu, Huwate Yeerna, Nijiro Nohata, Joshua Chiou, Olivier Harismendy, Francesco Raimondi, Asuka Inoue, Robert B Russell, Pablo Tamayo, J Silvio Gutkind
Illuminating the Onco-GPCRome: Novel G protein-coupled receptor-driven oncocrine networks and targets for cancer immunotherapy. The Journal of biological chemistry 294 (29) (2019)
William W Greenwald, Joshua Chiou, Jian Yan, Yunjiang Qiu, Ning Dai, Allen Wang, Naoki Nariai, Anthony Aylward, Jee Yun Han, Nikita Kadakia, Laura Regue, Mei-Lin Okino, Frauke Drees, Dana Kramer, Nicholas Vinckier, Liliana Minichiello, David U Gorkin, Joseph Avruch, Kelly A Frazer, Maike Sander, Bing Ren, Kyle J Gaulton
Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk. Nature communications 10 (1) (2019)
Miriam S Udler, Jaegil Kim, Marcin von Grotthuss, Sílvia Bonàs-Guarch, Joanne B Cole, Joshua Chiou, Christopher D Anderson, Michael Boehnke, Markku Laakso, Gil Atzmon, Benjamin Glaser, Josep Maria Mercader, Kyle Gaulton, Jason Flannick, Gad Getz, Jose C Florez
Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis. PLoS medicine 15 (9) (2018)

Joshua Chiou.css-eqlu8i{font-size:small;padding-left:4px;} (Josh Chiou)

Publication Activity (10 Years)

Top Topics

Top Venues

Joshua Chiou (Josh Chiou)