Sebastian Bonhoeffer

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 27

Top Topics

Escherichia Coli

Antimicrobial Resistance

Systematic Review

Top Venues

PLoS computational biology

Proceedings. Biological sciences

Journal of the Royal Society, Interface

This page only lists publications with an associated author ORCID identifier.

Publications

Christin Nyhoegen, Sebastian Bonhoeffer, Hildegard Uecker
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution. Evolutionary applications 17 (8) (2024)
Christin Nyhoegen, Sebastian Bonhoeffer, Hildegard Uecker
The many dimensions of combination therapy: How to combine antibiotics to limit resistance evolution. Evolutionary applications 17 (8) (2024)
Berit Siedentop, Dario Rüegg, Sebastian Bonhoeffer, Hélène Chabas
My host's enemy is my enemy: plasmids carrying CRISPR-Cas as a defence against phages. Proceedings. Biological sciences 291 (2015) (2024)
Berit Siedentop, Dario Rüegg, Sebastian Bonhoeffer, Hélène Chabas
My host's enemy is my enemy: plasmids carrying CRISPR-Cas as a defence against phages. Proceedings. Biological sciences 291 (2015) (2024)
Berit Siedentop, Dario Rüegg, Sebastian Bonhoeffer, Hélène Chabas
My host's enemy is my enemy: plasmids carrying CRISPR-Cas as a defence against phages. Proceedings. Biological sciences 291 (2015) (2024)
Berit Siedentop, Viacheslav N Kachalov, Christopher Witzany, Matthias Egger, Roger D Kouyos, Sebastian Bonhoeffer
The effect of combining antibiotics on resistance: A systematic review and meta-analysis. medRxiv : the preprint server for health sciences (2023)
Chloé Pasin, Camila Rosat Consiglio, Jana Sanne Huisman, Ann-Marie Glasø de Lange, Hannah Peckham, Enriqueta Vallejo-Yagüe, Irene A Abela, Ulrika Islander, Nadia Neuner-Jehle, Maria Pujantell, Olivia Roth, Melanie Schirmer, Burcu Tepekule, Marius Zeeb, Anna Hachfeld, Karoline Aebi-Popp, Roger D Kouyos, Sebastian Bonhoeffer
Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications. Royal Society open science 10 (7) (2023)
Jana Sanne Huisman, Jérémie Scire, Daniel C Angst, Jinzhou Li, Richard A Neher, Marloes H Maathuis, Sebastian Bonhoeffer, Tanja Stadler
Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2. eLife 11 (2022)
Hélène Chabas, Viktor Müller, Sebastian Bonhoeffer, Roland R Regoes
Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems. PLoS computational biology 18 (7) (2022)
Marie Vasse, Sebastian Bonhoeffer, Antoine Frénoy
Ecological effects of stress drive bacterial evolvability under sub-inhibitory antibiotic treatments. ISME communications 2 (1) (2022)
Peter Ashcroft, Sebastian Bonhoeffer
Constrained optimization of divisional load in hierarchically organized tissues during homeostasis. Journal of the Royal Society, Interface 19 (187) (2022)
João Pires, Jana Sanne Huisman, Sebastian Bonhoeffer, Thomas P Van Boeckel
Increase in antimicrobial resistance in Escherichia coli in food animals between 1980 and 2018 assessed using genomes from public databases. The Journal of antimicrobial chemotherapy (2021)
Judith A Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R Regoes
Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches. PLoS computational biology 17 (2) (2021)
Peter Ashcroft, Sonja Lehtinen, Daniel C Angst, Nicola Low, Sebastian Bonhoeffer
Quantifying the impact of quarantine duration on COVID-19 transmission. eLife 10 (2021)
Erik Bakkeren, Joana Anuschka Herter, Jana Sanne Huisman, Yves Steiger, Ersin Gül, Joshua Patrick Mark Newson, Alexander Oliver Brachmann, Jörn Piel, Roland R Regoes, Sebastian Bonhoeffer, Médéric Diard, Wolf-Dietrich Hardt
Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut. eLife 10 (2021)
Daniel C Angst, Burcu Tepekule, Lei Sun, Balázs Bogos, Sebastian Bonhoeffer
Comparing treatment strategies to reduce antibiotic resistance in an in vitro epidemiological setting. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)
Claudia Igler, Jana Sanne Huisman, Berit Siedentop, Sebastian Bonhoeffer, Sonja Lehtinen
Plasmid co-infection: linking biological mechanisms to ecological and evolutionary dynamics. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1842) (2021)
Sonja Lehtinen, Jana Sanne Huisman, Sebastian Bonhoeffer
Evolutionary mechanisms that determine which bacterial genes are carried on plasmids. Evolution letters 5 (3) (2021)
Thomas P Van Boeckel, João Pires, Reshma Silvester, Cheng Zhao, Julia Song, Nicola G Criscuolo, Marius Gilbert, Sebastian Bonhoeffer, Ramanan Laxminarayan
Global trends in antimicrobial resistance in animals in low- and middle-income countries. Science (New York, N.Y.) 365 (6459) (2020)
Christopher Witzany, Sebastian Bonhoeffer, Jens Rolff
Is antimicrobial resistance evolution accelerating? PLoS pathogens 16 (10) (2020)
Fabienne Benz, Jana Sanne Huisman, Erik Bakkeren, Joana A Herter, Tanja Stadler, Martin Ackermann, Médéric Diard, Adrian Egli, Alex R Hall, Wolf-Dietrich Hardt, Sebastian Bonhoeffer
Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. The ISME journal 15 (3) (2020)
Richard C Allen, Jan Engelstädter, Sebastian Bonhoeffer, Bruce Alan McDonald, Alex R Hall
Reversing resistance: different routes and common themes across pathogens. Proceedings. Biological sciences 284 (1863) (2018)
Denise Kühnert, Roger D Kouyos, George Shirreff, Jūlija Pečerska, Alexandra U Scherrer, Katharina Kusejko, Sabine Yerly, Thomas Klimkait, Vincent Aubert, Huldrych F Günthard, Tanja Stadler, Sebastian Bonhoeffer, null null
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics. PLoS pathogens 14 (2) (2018)
Jonas I Liechti, Gabriel E Leventhal, Sebastian Bonhoeffer
Host population structure impedes reversion to drug sensitivity after discontinuation of treatment. PLoS computational biology 13 (8) (2017)
Thomas O Richardson, Jonas I Liechti, Nathalie Stroeymeyt, Sebastian Bonhoeffer, Laurent Keller
Short-term activity cycles impede information transmission in ant colonies. PLoS computational biology 13 (5) (2017)
Burcu Tepekule, Hildegard Uecker, Isabel Derungs, Antoine Frénoy, Sebastian Bonhoeffer
Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies. PLoS computational biology 13 (9) (2017)
Mathieu Legros, Sebastian Bonhoeffer
A combined within-host and between-hosts modelling framework for the evolution of resistance to antimalarial drugs. Journal of the Royal Society, Interface 13 (117) (2016)