Tao Huan

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 43

Top Venues

Analytical chemistry

Proceedings of the National Academy of Sciences of the United States of America

Molecules (Basel, Switzerland)

Environmental science & technology

University of British Columbia

University of Alberta (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of British Columbia Jul 1o 2018

Canada

Assistant Professor :: Chemistry

Education History

University of Alberta Sep 1o 2010 - Sep 30o 2015

Canada

PHD :: Chemistry

Publications

Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Kirstin L Brown, Jessica M C Krekhno, Shipei Xing, Tao Huan, Lindsay D Eltis
Cholesterol-Mediated Coenzyme A Depletion in Catabolic Mutants of Mycobacteria Leads to Toxicity. ACS infectious diseases (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Tingting Zhao, Shipei Xing, Huaxu Yu, Tao Huan
De Novo Cleaning of Chimeric MS/MS Spectra for LC-MS/MS-Based Metabolomics. Analytical chemistry (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Stacy D Singer, Madeline Lehmann, Zixuan Zhang, Udaya Subedi, Kimberley Burton Hughes, Nathaniel Z-L Lim, Rodrigo Ortega-Polo, Guanqun Chen, Surya Acharya, Abdelali Hannoufa, Tao Huan
Elucidation of Physiological, Transcriptomic and Metabolomic Salinity Response Mechanisms in Medicago sativa . Plants (Basel, Switzerland) 12 (10) (2023)
Jian Guo, Tao Huan
Mechanistic Understanding of the Discrepancies between Common Peak Picking Algorithms in Liquid Chromatography-Mass Spectrometry-Based Metabolomics. Analytical chemistry (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Danielle L Sexton, Ameena Hashimi, Polina Beskrovnaya, Lloyd Sibanda, Tao Huan, Elitza I Tocheva
The cell envelope of Thermotogae suggests a mechanism for outer membrane biogenesis. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Shipei Xing, Sam Shen, Banghua Xu, Xiaoxiao Li, Tao Huan
BUDDY: molecular formula discovery via bottom-up MS/MS interrogation. Nature methods (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Huaxu Yu, Tao Huan
MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities. Bioinformatics (Oxford, England) 38 (13) (2022)
Jian Guo, Sam Shen, Min Liu, Chenjingyi Wang, Brian Low, Ying Chen, Yaxi Hu, Shipei Xing, Huaxu Yu, Yu Gao, Mingliang Fang, Tao Huan
JPA: Joint Metabolic Feature Extraction Increases the Depth of Chemical Coverage for LC-MS-Based Metabolomics and Exposomics. Metabolites 12 (3) (2022)
Jian Guo, Sam Shen, Tao Huan
Paramounter: Direct Measurement of Universal Parameters To Process Metabolomics Data in a "White Box". Analytical chemistry 94 (10) (2022)
Huaxu Yu, Peijun Sang, Tao Huan
Adaptive Box-Cox Transformation: A Highly Flexible Feature-Specific Data Transformation to Improve Metabolomic Data Normality for Better Statistical Analysis. Analytical chemistry 94 (23) (2022)
Jian Guo, Huaxu Yu, Shipei Xing, Tao Huan
Addressing big data challenges in mass spectrometry-based metabolomics. Chemical communications (Cambridge, England) 58 (72) (2022)
Min Liu, Jie Jiang, Jie Zheng, Tao Huan, Bei Gao, Xunchang Fei, Yulan Wang, Mingliang Fang
RTP: One Effective Platform to Probe Reactive Compound Transformation Products and Its Applications for a Reactive Plasticizer BADGE. Environmental science & technology 55 (23) (2021)
Huaxu Yu, Ying Chen, Tao Huan
Computational Variation: An Underinvestigated Quantitative Variability Caused by Automated Data Processing in Untargeted Metabolomics. Analytical chemistry (2021)
Jian Guo, Sam Shen, Shipei Xing, Huaxu Yu, Tao Huan
ISFrag: De Novo Recognition of In-Source Fragments for Liquid Chromatography-Mass Spectrometry Data. Analytical chemistry 93 (29) (2021)
Shipei Xing, Huaxu Yu, Min Liu, Qingquan Jia, Zhi Sun, Mingliang Fang, Tao Huan
Recognizing Contamination Fragment Ions in Liquid Chromatography-Tandem Mass Spectrometry Data. Journal of the American Society for Mass Spectrometry 32 (9) (2021)
Jian Guo, Sam Shen, Shipei Xing, Ying Chen, Frank Chen, Elizabeth M Porter, Huaxu Yu, Tao Huan
EVA: Evaluation of Metabolic Feature Fidelity Using a Deep Learning Model Trained With Over 25000 Extracted Ion Chromatograms. Analytical chemistry 93 (36) (2021)
Shipei Xing, Yibo Jiao, Melody Salehzadeh, Kiran K Soma, Tao Huan
SteroidXtract: Deep Learning-Based Pattern Recognition Enables Comprehensive and Rapid Extraction of Steroid-Like Metabolic Features for Automated Biology-Driven Metabolomics. Analytical chemistry 93 (14) (2021)
Jian Guo, Sam Shen, Shipei Xing, Tao Huan
DaDIA: Hybridizing Data-Dependent and Data-Independent Acquisition Modes for Generating High-Quality Metabolomic Data. Analytical chemistry 93 (4) (2021)
Tengfei Xu, Liyan Chen, Yan Ting Lim, Haoduo Zhao, Hongjin Chen, Ming Wei Chen, Tao Huan, Yichao Huang, Radoslaw Mikolaj Sobota, Mingliang Fang
System Biology-Guided Chemical Proteomics to Discover Protein Targets of Monoethylhexyl Phthalate in Regulating Cell Cycle. Environmental science & technology 55 (3) (2021)
Huaxu Yu, Tao Huan
Patterned Signal Ratio Biases in Mass Spectrometry-Based Quantitative Metabolomics. Analytical chemistry 93 (4) (2021)
Anne M Evans, Claire O'Donovan, Mary C Playdon, Christopher Beecher, Richard D Beger, John A Bowden, David I Broadhurst, Andrew T Chan, Surendra Dasari, Warwick B Dunn, Julian Leether Griffin, Thomas Hartung, Ping- Ching Hsu, Tao Huan, Judith J M Jans, Christina M Jones, Maureen Kachman, Andre Kleensang, Matthew R Lewis, María Eugenia Monge, Jonathan D Mosley, Eric B Taylor, Fariba Tayyari, Georgios A Theodoridis, Federico T Torta, Baljit K Ubhi, Dajana Vuckovic, null null
Dissemination and analysis of the quality assurance (QA) and quality control (QC) practices of LC-MS based untargeted metabolomics practitioners. Metabolomics : Official journal of the Metabolomic Society 16 (10) (2020)
Huaxu Yu, Shipei Xing, Lorenz Nierves, Philipp F Lange, Tao Huan
Fold-Change Compression: An Unexplored But Correctable Quantitative Bias Caused by Nonlinear Electrospray Ionization Responses in Untargeted Metabolomics. Analytical chemistry 92 (10) (2020)
Lixian Li, Xiaodong Zheng, Qi Zhou, Nathaniel Villanueva, Weiqi Nian, Xingming Liu, Tao Huan
Metabolomics-Based Discovery of Molecular Signatures for Triple Negative Breast Cancer in Asian Female Population. Scientific reports 10 (1) (2020)
Xiaoyu Tang, Yuta Kudo, Jonathon L Baker, Sandra LaBonte, Peter A Jordan, Shaun M K McKinnie, Jian Guo, Tao Huan, Bradley S Moore, Anna Edlund
Cariogenic Streptococcus mutans Produces Tetramic Acid Strain-Specific Antibiotics That Impair Commensal Colonization. ACS infectious diseases 6 (4) (2020)
Jian Guo, Tao Huan
Comparison of Full-Scan, Data-Dependent, and Data-Independent Acquisition Modes in Liquid Chromatography-Mass Spectrometry Based Untargeted Metabolomics. Analytical chemistry 92 (12) (2020)
Tao Huan, Erica M Forsberg, Duane Rinehart, Caroline H Johnson, Julijana Ivanisevic, H Paul Benton, Mingliang Fang, Aries Aisporna, Brian Hilmers, Farris L Poole, Michael P Thorgersen, Michael W W Adams, Gregory Krantz, Matthew W Fields, Paul D Robbins, Laura J Niedernhofer, Trey Ideker, Erica L Majumder, Judy D Wall, Nicholas J W Rattray, Royston Goodacre, Luke L Lairson, Gary Siuzdak
Systems biology guided by XCMS Online metabolomics. Nature methods 14 (5) (2019)
Shenglan Jia, Tengfei Xu, Tao Huan, Maria Chong, Min Liu, Wenjuan Fang, Mingliang Fang
Chemical Isotope Labeling Exposome (CIL-EXPOSOME): One High-Throughput Platform for Human Urinary Global Exposome Characterization. Environmental science & technology 53 (9) (2019)
Yaxi Hu, Betty Cai, Tao Huan
Enhancing Metabolome Coverage in Data-Dependent LC-MS/MS Analysis through an Integrated Feature Extraction Strategy. Analytical chemistry 91 (22) (2019)
Jia Jia Zhang, Xiaoyu Tang, Tao Huan, Avena C Ross, Bradley S Moore
Pass-back chain extension expands multimodular assembly line biosynthesis. Nature chemical biology 16 (1) (2019)
Carlos Guijas, J Rafael Montenegro-Burke, Xavier Domingo-Almenara, Amelia Palermo, Benedikt Warth, Gerrit Hermann, Gunda Koellensperger, Tao Huan, Winnie Uritboonthai, Aries E Aisporna, Dennis W Wolan, Mary E Spilker, H Paul Benton, Gary E Siuzdak
METLIN: A Technology Platform for Identifying Knowns and Unknowns. Analytical chemistry 90 (5) (2018)
Tao Huan, Amelia Palermo, Julijana Ivanisevic, Duane Rinehart, David Edler, Thiery Phommavongsay, H Paul Benton, Carlos Guijas, Xavier Domingo-Almenara, Benedikt Warth, Gary E Siuzdak
Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology. Analytical chemistry 90 (14) (2018)
Benedikt Warth, Scott Spangler, Mingliang Fang, Caroline H Johnson, Erica M Forsberg, Ana Granados, Richard L Martin, Xavier Domingo-Almenara, Tao Huan, Duane Rinehart, J Rafael Montenegro-Burke, Brian Hilmers, Aries Aisporna, Linh T Hoang, Winnie Uritboonthai, H Paul Benton, Susan D Richardson, Antony J Williams, Gary E Siuzdak
Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing. Analytical chemistry 89 (21) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Tao Huan