Alan K Jarmusch

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 28

Top Venues

Nature communications

JMIR public health and surveillance

Rapid communications in mass spectrometry : RCM

Journal of the American Society for Mass Spectrometry

Purdue University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Purdue University Sep 01 2011 - Sep 01 2016

United States

PHD :: Chemistry, Analytical Division

University of North Carolina at Greensboro Sep 01 2007 - Jun 01 2011

United States

BSC :: Chemistry and Biochemistry

Publications

Stephanie M Jones, Sarah Jo Sleiman, Katharine E McCann, Alan K Jarmusch, Georgia M Alexander, Serena M Dudek
Prenatal exposure to the mineralocorticoid receptor antagonist spironolactone disrupts hippocampal area CA2 connectivity and alters behavior in mice. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology (2024)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Kirsten E Overdahl, Justin B Collier, Anton M Jetten, Alan K Jarmusch
Signal Response Evaluation Applied to Untargeted Mass Spectrometry Data to Improve Data Interpretability. Journal of the American Society for Mass Spectrometry (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender Portal Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo-Bin Kang, Hyun Woo Kim, Todor Kondić, Helena M Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin Johan Jozias van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature communications 14 (1) (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
Giovanni O Quiroz-Delfi, Cynthia V Rider, Cynthia V Rider, Alan K Jarmusch, Geoffrey A Mueller
Non-targeted chemical analysis of consumer botanical products labeled as blue cohosh (Caulophyllum thalictroides), goldenseal (Hydrastis canadensis), or yohimbe bark (Pausinystalia yohimbe) by NMR and MS. Analytical and bioanalytical chemistry (2023)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Timothy K Mackey, Alan K Jarmusch, Qing Xu, Kunyang Sun, Aileen Lu, Shaden Aguirre, Jessica Lim, Simran Bhakta, Pieter C Dorrestein
Multifactor Quality and Safety Analysis of Antimicrobial Drugs Sold by Online Pharmacies That Do Not Require a Prescription: Multiphase Observational, Content Analysis, and Product Evaluation Study. JMIR public health and surveillance 8 (12) (2022)
Robin Schmid, Daniel Petras, Louis-Félix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa, Johannes Rainer, Mar Garcia-Aloy, Kai Dührkop, Ansgar Korf, Tomáš Pluskal, Zdeněk Kameník, Alan K Jarmusch, Andrés Mauricio Caraballo-Rodríguez, Kelly C Weldon, Melissa Nothias-Esposito, Alexander A Aksenov, Anelize Bauermeister, Andrea G Albarracín Orio, Carlismari Oliveira Grundmann, Fernando Vargas, Irina Koester, Julia M Gauglitz, Emily C Gentry, Yannick Hövelmann, Svetlana A Kalinina, Matthew A Pendergraft, Morgan Panitchpakdi, Richard Tehan, Audrey Le Gouëllec, Gajender Aleti, Helena Mannochio Russo, Birgit Arndt, Florian Hübner, Heiko Hayen, Hui Zhi, Manuela Raffatellu, Kimberly A Prather, Lihini I Aluwihare, Sebastian Böcker, Kerry L McPhail, Hans-Ulrich Humpf, Uwe Karst, Pieter C Dorrestein
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment. Nature communications 12 (1) (2021)
Daniel Petras, Andrés Mauricio Caraballo-Rodríguez, Alan K Jarmusch, Carlos Molina-Santiago, Julia M Gauglitz, Emily C Gentry, Pedro Belda-Ferre, Diego Romero, Shirley M Tsunoda, Pieter C Dorrestein, Mingxun Wang
Chemical Proportionality within Molecular Networks. Analytical chemistry 93 (38) (2021)
Scott Alexander Jarmusch, Justin Johan Jozias van der Hooft, Pieter C Dorrestein, Alan K Jarmusch
Advancements in capturing and mining mass spectrometry data are transforming natural products research. Natural product reports 38 (11) (2021)
Allegra T Aron, Emily C Gentry, Kerry L McPhail, Louis-Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani, Daniel Petras, Julia M Gauglitz, Nicole Sikora, Fernando Vargas, Justin Johan Jozias van der Hooft, Madeleine Ernst, Kyo-Bin Kang, Christine M Aceves, Andrés Mauricio Caraballo-Rodriguez, Irina Koester, Kelly C Weldon, Samuel Bertrand, Catherine Roullier, Kunyang Sun, Richard M Tehan, Cristopher A Boya P, Martin H Christian, Marcelino Gutiérrez, Aldo Moreno Ulloa, Javier Andres Tejeda Mora, Randy Mojica-Flores, Johant Lakey-Beitia, Victor Vásquez-Chaves, Yilue Zhang, Angela I Calderón, Nicole M Tayler, Robert A Keyzers, Fidele Tugizimana, Nombuso Ndlovu, Alexander A Aksenov, Alan K Jarmusch, Robin Schmid, Andrew W Truman, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Reproducible molecular networking of untargeted mass spectrometry data using GNPS. Nature protocols 15 (6) (2020)
Alison Vrbanac, Kathryn A Patras, Alan K Jarmusch, Robert H Mills, Samuel R Shing, Robert A Quinn, Fernando Vargas, David J Gonzalez, Pieter C Dorrestein, Rob Knight, Victor Nizet
Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic. mSystems 5 (5) (2020)
Alan K Jarmusch, Mingxun Wang, Christine M Aceves, Rohit S Advani, Shaden Aguirre, Alexander A Aksenov, Gajender Aleti, Allegra T Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel O Elijah, Madeleine Ernst, Julia M Gauglitz, Emily C Gentry, Makhai Husband, Scott A Jarmusch, Kenneth L Jones, Zdeněk Kameník, Audrey Le Gouëllec, Aileen Lu, Laura-Isobel McCall, Kerry L McPhail, Michael J Meehan, Alexey V Melnik, Riya C Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis-Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert A Quinn, Nicole Sikora, Justin Johan Jozias van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly C Weldon, Rob Knight, Nuno Bandeira, Pieter C Dorrestein
ReDU: a framework to find and reanalyze public mass spectrometry data. Nature methods 17 (9) (2020)
Andre Mu, Glen P Carter, Lucy Li, Nicole S Isles, Alison F Vrbanac, James T Morton, Alan K Jarmusch, David P De Souza, Vinod K Narayana, Komal Kanojia, Brunda Nijagal, Malcolm J McConville, Rob Knight, Benjamin Peter Howden, Timothy P Stinear
Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium. mSystems 5 (4) (2020)
Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo-Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin Johan Jozias van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Feature-based molecular networking in the GNPS analysis environment. Nature methods 17 (9) (2020)
Fernando Vargas, Kelly C Weldon, Nicole Sikora, Mingxun Wang, Zheng Zhang, Emily C Gentry, Morgan W Panitchpakdi, Andrés Mauricio Caraballo-Rodriguez, Pieter C Dorrestein, Alan K Jarmusch
Protocol for community-created public MS/MS reference spectra within the Global Natural Products Social Molecular Networking infrastructure. Rapid communications in mass spectrometry : RCM 34 (10) (2020)
Marisol León, Christina R Ferreira, Livia S Eberlin, Alan K Jarmusch, Valentina Pirro, Ana Clara Bastos Rodrigues, Phelipe Oliveira Favaron, Maria Angelica Miglino, Robert Graham Cooks
Metabolites and Lipids Associated with Fetal Swine Anatomy via Desorption Electrospray Ionization - Mass Spectrometry Imaging. Scientific reports 9 (1) (2019)
Alan K Jarmusch, Emmanuel O Elijah, Fernando Vargas, Amina Bouslimani, Ricardo R da Silva, Madeleine Ernst, Mingxun Wang, Krizia K Del Rosario, Pieter C Dorrestein, Shirley M Tsunoda
Initial Development toward Non-Invasive Drug Monitoring via Untargeted Mass Spectrometric Analysis of Human Skin. Analytical chemistry 91 (13) (2019)
Ricardo R da Silva, Fernando Vargas, Madeleine Ernst, Ngoc Hung Nguyen, Sanjana Bolleddu, Krizia Karen Del Rosario, Shirley M Tsunoda, Pieter C Dorrestein, Alan K Jarmusch
Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter. Journal of the American Society for Mass Spectrometry 30 (2) (2018)
Fernanda Bertuccez Cordeiro, Christina Ramires Ferreira, Tiago Jose Paschoal Sobreira, Karen E Yannell, Alan K Jarmusch, Agnaldo P Cedenho, Edson G Lo Turco, Robert Graham Cooks
Multiple reaction monitoring (MRM)-profiling for biomarker discovery applied to human polycystic ovarian syndrome. Rapid communications in mass spectrometry : RCM 31 (17) (2018)

Alan K Jarmusch.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Alan K Jarmusch