Gary E Siuzdak (Gary Siuzdak)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 81

Top Topics

Mass Spectrometry

Breast Cancer Cells

Top Venues

Analytical chemistry

Nature metabolism

This page only lists publications with an associated author ORCID identifier.

Publications

Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
Publisher Correction: METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry 96 (14) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism 6 (6) (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry 96 (14) (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry 96 (14) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry 96 (22) (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry 96 (22) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Martin A Giera, Aries Aisporna, Winnie Uritboonthai, Linh Hoang, Rico J E Derks, Kara M Joseph, Erin S Baker, Gary E Siuzdak
XCMS-METLIN: data-driven metabolite, lipid, and chemical analysis. Molecular systems biology (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry 96 (22) (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry 96 (22) (2024)
Martin A Giera, Aries Aisporna, Winnie Uritboonthai, Gary E Siuzdak
The hidden impact of in-source fragmentation in metabolic and chemical mass spectrometry data interpretation. Nature metabolism (2024)
Sara Martinez de Cripan, Trisha Arora, Adrià Olomí, Nuria Canela, Gary E Siuzdak, Xavier Domingo-Almenara
Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules. Analytical chemistry 96 (22) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism 6 (6) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism 6 (6) (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry 96 (14) (2024)
Erin S Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin A Giera, Gary E Siuzdak
Publisher Correction: METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification. Nature metabolism (2024)
Corey Hoang, Winnie Uritboonthai, Linh Hoang, Elizabeth M Billings, Aries Aisporna, Farshad A Nia, Rico J E Derks, James R Williamson, Martin A Giera, Gary E Siuzdak
Tandem Mass Spectrometry across Platforms. Analytical chemistry 96 (14) (2024)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation 149 (11) (2023)
Gary E Siuzdak
Subcellular quantitative imaging of metabolites at the organelle level. Nature metabolism (2023)
Naseer A Kutchy, Amelia Palermo, Rong Ma, Zhong Li, Alexandria Ulanov, Shannon Callen, Gary E Siuzdak, Sabita Roy, Shilpa Buch, Guoku Hu
Changes in Plasma Metabolic Signature upon Acute and Chronic Morphine Administration in Morphine-Tolerant Mice. Metabolites 13 (3) (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation 149 (11) (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation (2023)
Naseer A Kutchy, Amelia Palermo, Rong Ma, Zhong Li, Alexandria Ulanov, Shannon Callen, Gary E Siuzdak, Sabita Roy, Shilpa Buch, Guoku Hu
Changes in Plasma Metabolic Signature upon Acute and Chronic Morphine Administration in Morphine-Tolerant Mice. Metabolites 13 (3) (2023)
Samuel Bernardo-Bermejo, Jingchuan Xue, Linh Hoang, Elizabeth M Billings, Bill Webb, M Willy Honders, Sanne Venneker, Bram Heijs, María Castro-Puyana, María Luisa Marina, Erik B van den Akker, Marieke Griffioen, Gary E Siuzdak, Martin A Giera, Elena Sánchez-López
Quantitative multiple fragment monitoring with enhanced in-source fragmentation/annotation mass spectrometry. Nature protocols (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation (2023)
Naseer A Kutchy, Amelia Palermo, Rong Ma, Zhong Li, Alexandria Ulanov, Shannon Callen, Gary E Siuzdak, Sabita Roy, Shilpa Buch, Guoku Hu
Changes in Plasma Metabolic Signature upon Acute and Chronic Morphine Administration in Morphine-Tolerant Mice. Metabolites 13 (3) (2023)
Erin S Baker, Corey Hoang, Winnie Uritboonthai, Heino M Heyman, Brian S Pratt, Michael J MacCoss, Brendan MacLean, Robert Plumb, Aries Aisporna, Gary E Siuzdak
METLIN-CCS: an ion mobility spectrometry collision cross section database. Nature methods (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation 149 (11) (2023)
Anja M Billing, Young Chul Kim, Søren Gullaksen, Benedikt Schrage, Janice Raabe, Arvid D Hutzfeldt, Fatih Demir, Elina Kovalenko, Moritz Lassé, Aurelien Dugourd, Robin Fallegger, Birgit Klampe, Johannes Jaegers, Qing Li, Olha Kravtsova, Maria Crespo-Masip, Amelia Palermo, Robert A Fenton, Elion Hoxha, Stefan Blankenberg, Paulus F Kirchhof, Tobias B Huber, Esben Laugesen, Tanja Zeller, Maria Chrysopoulou, Julio Saez-Rodriguez, Christina Magnussen, Thomas Eschenhagen, Alexander Staruschenko, Gary E Siuzdak, Per L Poulsen, Clarissa Schwab, Friederike Cuello, Volker Vallon, Markus M Rinschen
Metabolic Communication by SGLT2 Inhibition. Circulation 149 (11) (2023)
Jennifer L Goff, Yan Chen, Michael P Thorgersen, Linh T Hoang, Farris L Poole, Elizabeth G Szink, Gary E Siuzdak, Christopher J Petzold, Michael W W Adams
Mixed heavy metal stress induces global iron starvation response. The ISME journal (2022)
Aries Aisporna, H Paul Benton, Andy Chen, Rico J E Derks, Jean-Marie Galano, Martin A Giera, Gary E Siuzdak
Neutral Loss Mass Spectral Data Enhances Molecular Similarity Analysis in METLIN. Journal of the American Society for Mass Spectrometry 33 (3) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Jennifer L Goff, Yan Chen, Michael P Thorgersen, Linh T Hoang, Farris L Poole, Elizabeth G Szink, Gary E Siuzdak, Christopher J Petzold, Michael W W Adams
Mixed heavy metal stress induces global iron starvation response. The ISME journal (2022)
Jennifer L Goff, Yan Chen, Michael P Thorgersen, Linh T Hoang, Farris L Poole, Elizabeth G Szink, Gary E Siuzdak, Christopher J Petzold, Michael W W Adams
Mixed heavy metal stress induces global iron starvation response. The ISME journal 17 (3) (2022)
Carlos Guijas, Andrew To, J Rafael Montenegro-Burke, Xavier Domingo-Almenara, Zaida Alipio-Gloria, Bernard P Kok, Enrique Saez, Nicole H Alvarez, Kristen A Johnson, Gary E Siuzdak
Drug-Initiated Activity Metabolomics Identifies Myristoylglycine as a Potent Endogenous Metabolite for Human Brown Fat Differentiation. Metabolites 12 (8) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods (2022)
Markus M Rinschen, Jennifer L Harder, Madalina E Carter-Timofte, Luis Zanon Rodriguez, Carmen Mirabelli, Fatih Demir, Naziia Kurmasheva, Suresh K Ramakrishnan, Madlen Kunke, Yifan Tan, Anja M Billing, Eileen Dahlke, Alexey A Larionov, Wibke Bechtel-Walz, Ute Aukschun, Marlen Grabbe, Rikke Nielsen, Erik I Christensen, Matthias Kretzler, Tobias B Huber, Christiane E Wobus, David Olagnier, Gary E Siuzdak, Florian Grahammer, Franziska Theilig
VPS34-dependent control of apical membrane function of proximal tubule cells and nutrient recovery by the kidney. Science signaling 15 (762) (2022)
Jennifer L Goff, Yan Chen, Michael P Thorgersen, Linh T Hoang, Farris L Poole, Elizabeth G Szink, Gary E Siuzdak, Christopher J Petzold, Michael W W Adams
Mixed heavy metal stress induces global iron starvation response. The ISME journal 17 (3) (2022)
Carlos Guijas, Lucy E Horton, Linh Hoang, Xavier Domingo-Almenara, Elizabeth M Billings, Brian C Ware, Brian Sullivan, Gary E Siuzdak
Microbial Metabolite 3-Indolepropionic Acid Mediates Immunosuppression. Metabolites 12 (7) (2022)
Markus M Rinschen, Oleg Palygin, Ashraf El-Meanawy, Xavier Domingo-Almenara, Amelia Palermo, Lashodya V Dissanayake, Daria Golosova, Michael A Schafroth, Carlos Guijas, Fatih Demir, Johannes Jägers, Megan L Gliozzi, Jingchuan Xue, Martin Höhne, Thomas Benzing, Bernard P Kok, Enrique Saez, Markus Bleich, Nina Himmerkus, Ora A Weisz, Benjamin F Cravatt, Marcus Krueger, H Paul Benton, Gary E Siuzdak, Alexander Staruschenko
Accelerated lysine metabolism conveys kidney protection in salt-sensitive hypertension. Nature communications 13 (1) (2022)
Zhixu Ni, Michele Wölk, Geoff Jukes, Karla Mendivelso Espinosa, Robert Ahrends, Lucila Aimo, Jorge Álvarez-Jarreta, Simon R Andrews, Robert Andrews, Alan Bridge, Geremy C Clair, Matthew J Conroy, Eoin Fahy, Caroline Gaud, Laura Goracci, Jürgen Hartler, Nils Hoffmann, Dominik Kopczyinki, Ansgar Korf, Andrea F Lopez-Clavijo, Adnan Malik, Jacobo Miranda Ackerman, Martijn R Molenaar, Claire O'Donovan, Tomáš Pluskal, Andrej Shevchenko, Denise N Slenter, Gary E Siuzdak, Martina Kutmon, Hiroshi Tsugawa, Egon L Wilighagen, Jianguo Xia, Valerie B O'Donnell, Maria Fedorova
Guiding the choice of informatics software and tools for lipidomics research applications. Nature methods 20 (2) (2022)
Jennifer L Goff, Yan Chen, Michael P Thorgersen, Linh T Hoang, Farris L Poole, Elizabeth G Szink, Gary E Siuzdak, Christopher J Petzold, Michael W W Adams
Mixed heavy metal stress induces global iron starvation response. The ISME journal (2022)
Saleh Alseekh, Asaph Aharoni, Yariv Brotman, Kevin Contrepois, John Charles D'Auria, Jan Ewald, Jennifer C Ewald, Paul D Fraser, Patrick Giavalisco, Robert D Hall, Matthias Heinemann, Hannes Link, Jie Luo, Steffen Neumann, Jens B Nielsen, Leonardo Perez de Souza, Takashi Hashimoto, Uwe Sauer, Frank C Schroeder, Stefan Schuster, Gary E Siuzdak, Aleksandra Skirycz, Lloyd W Sumner, Michael Paul Snyder, Huiru Tang, Takayuki Tohge, Yulan Wang, Weiwei Wen, Si Wu, Guo-Wang Xu, Nicola Zamboni, Alisdair Robert Fernie
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature methods 18 (7) (2021)
Jingchuan Xue, Rico J E Derks, Linh Hoang, Martin A Giera, Gary E Siuzdak
Proteomics with Enhanced In-Source Fragmentation/Annotation: Applying XCMS-EISA Informatics and Q-MRM High-Sensitivity Quantification. Journal of the American Society for Mass Spectrometry 32 (11) (2021)
Erica L-W Majumder, Elizabeth M Billings, H Paul Benton, Richard L Martin, Amelia Palermo, Carlos Guijas, Markus M Rinschen, Xavier Domingo-Almenara, J Rafael Montenegro-Burke, Bradley A Tagtow, Robert S Plumb, Gary E Siuzdak
Cognitive analysis of metabolomics data for systems biology. Nature protocols 16 (3) (2021)
Jingchuan Xue, Rico J E Derks, Bill Webb, Elizabeth M Billings, Aries Aisporna, Martin A Giera, Gary E Siuzdak
Single Quadrupole Multiple Fragment Ion Monitoring Quantitative Mass Spectrometry. Analytical chemistry 93 (31) (2021)
J Rafael Montenegro-Burke, Bernard P Kok, Carlos Guijas, Xavier Domingo-Almenara, Clara Moon, Andrea Galmozzi, Seiya Kitamura, Lars Eckmann, Enrique Saez, Gary E Siuzdak, Dennis W Wolan
Metabolomics activity screening of T cell-induced colitis reveals anti-inflammatory metabolites. Science signaling 14 (702) (2021)
Jingchuan Xue, Carlos Guijas, H Paul Benton, Benedikt Warth, Gary E Siuzdak
METLIN MS2 molecular standards database: a broad chemical and biological resource. Nature methods 17 (10) (2021)
Jingchuan Xue, Xavier Domingo-Almenara, Carlos Guijas, Amelia Palermo, Markus M Rinschen, John Isbell, H Paul Benton, Gary E Siuzdak
Enhanced in-Source Fragmentation Annotation Enables Novel Data Independent Acquisition and Autonomous METLIN Molecular Identification. Analytical chemistry 92 (8) (2020)
Carlos Guijas, J Rafael Montenegro-Burke, Rigo Cintron-Colon, Xavier Domingo-Almenara, Manuel Sanchez-Alavez, Carlos A Aguirre, Kokila Shankar, Erica L-W Majumder, Elizabeth M Billings, Bruno Conti, Gary E Siuzdak
Metabolic adaptation to calorie restriction. Science signaling 13 (648) (2020)
Markus M Rinschen, Julijana Ivanisevic, Martin A Giera, Gary E Siuzdak
Identification of bioactive metabolites using activity metabolomics. Nature reviews. Molecular cell biology 20 (6) (2020)
Alessandra Riva, Orest Kuzyk, Erica M Forsberg, Gary E Siuzdak, Carina Pfann, Craig Herbold, Holger Daims, Alexander Loy, Benedikt Warth, David Berry
A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature communications 10 (1) (2019)
Xavier Domingo-Almenara, Carlos Guijas, Elizabeth M Billings, J Rafael Montenegro-Burke, Winnie Uritboonthai, Aries E Aisporna, Emily Chen, H Paul Benton, Gary E Siuzdak
The METLIN small molecule dataset for machine learning-based retention time prediction. Nature communications 10 (1) (2019)
Xavier Domingo-Almenara, J Rafael Montenegro-Burke, Carlos Guijas, Erica L-W Majumder, H Paul Benton, Gary E Siuzdak
Autonomous METLIN-Guided In-source Fragment Annotation for Untargeted Metabolomics. Analytical chemistry 91 (5) (2019)
Benedikt Warth, Amelia Palermo, Nicholas J W Rattray, Nathan V Lee, Zhou Zhu, Linh T Hoang, Yuping Cai, Anthony Mazurek, Stephen Dann, Todd VanArsdale, Valeria R Fantin, David Shields, Gary E Siuzdak, Caroline H Johnson
Palbociclib and Fulvestrant Act in Synergy to Modulate Central Carbon Metabolism in Breast Cancer Cells. Metabolites 9 (1) (2019)
Markus M Rinschen, Oleg Palygin, Carlos Guijas, Amelia Palermo, Nicolas Palacio-Escat, Xavier Domingo-Almenara, J Rafael Montenegro-Burke, Julio Saez-Rodriguez, Alexander Staruschenko, Gary E Siuzdak
Metabolic rewiring of the hypertensive kidney. Science signaling 12 (611) (2019)
Xavier Domingo-Almenara, J Rafael Montenegro-Burke, Julijana Ivanisevic, Aurelien Thomas, Jonathan Sidibé, Tony Teav, Carlos Guijas, Aries E Aisporna, Duane Rinehart, Linh Hoang, Anders Nordström, María Gómez-Romero, Luke Whiley, Matthew R Lewis, Jeremy K Nicholson, H Paul Benton, Gary E Siuzdak
XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules. Nature methods 15 (9) (2018)
Carlos Guijas, J Rafael Montenegro-Burke, Xavier Domingo-Almenara, Amelia Palermo, Benedikt Warth, Gerrit Hermann, Gunda Koellensperger, Tao Huan, Winnie Uritboonthai, Aries E Aisporna, Dennis W Wolan, Mary E Spilker, H Paul Benton, Gary E Siuzdak
METLIN: A Technology Platform for Identifying Knowns and Unknowns. Analytical chemistry 90 (5) (2018)
Carlos Guijas, J Rafael Montenegro-Burke, Benedikt Warth, Mary E Spilker, Gary E Siuzdak
Metabolomics activity screening for identifying metabolites that modulate phenotype. Nature biotechnology 36 (4) (2018)
Tao Huan, Amelia Palermo, Julijana Ivanisevic, Duane Rinehart, David Edler, Thiery Phommavongsay, H Paul Benton, Carlos Guijas, Xavier Domingo-Almenara, Benedikt Warth, Gary E Siuzdak
Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology. Analytical chemistry 90 (14) (2018)
Erica M Forsberg, Tao Huan, Duane Rinehart, H Paul Benton, Benedikt Warth, Brian Hilmers, Gary E Siuzdak
Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online. Nature protocols 13 (4) (2018)
Carlos Guijas, Gary E Siuzdak
Reply to Comment on METLIN: A Technology Platform for Identifying Knowns and Unknowns. Analytical chemistry 90 (21) (2018)
Amelia Palermo, Erica M Forsberg, Benedikt Warth, Aries E Aisporna, Elizabeth Billings, Ellen Kuang, H Paul Benton, David Berry, Gary E Siuzdak
Fluorinated Gold Nanoparticles for Nanostructure Imaging Mass Spectrometry. ACS nano 12 (7) (2018)
Junhua Wang, Peter D Westenskow, Mingliang Fang, Martin Friedlander, Gary E Siuzdak
Quantitative metabolomics of photoreceptor degeneration and the effects of stem cell-derived retinal pigment epithelium transplantation. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 374 (2079) (2017)
Xavier Domingo-Almenara, J Rafael Montenegro-Burke, H Paul Benton, Gary E Siuzdak
Annotation: A Computational Solution for Streamlining Metabolomics Analysis. Analytical chemistry 90 (1) (2017)
Benedikt Warth, Scott Spangler, Mingliang Fang, Caroline H Johnson, Erica M Forsberg, Ana Granados, Richard L Martin, Xavier Domingo-Almenara, Tao Huan, Duane Rinehart, J Rafael Montenegro-Burke, Brian Hilmers, Aries Aisporna, Linh T Hoang, Winnie Uritboonthai, H Paul Benton, Susan D Richardson, Antony J Williams, Gary E Siuzdak
Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing. Analytical chemistry 89 (21) (2017)
Brittney A Beyer, Mingliang Fang, Benjamin Sadrian, J Rafael Montenegro-Burke, Warren C Plaisted, Bernard P C Kok, Enrique Saez, Toru Kondo, Gary E Siuzdak, Luke L Lairson
Metabolomics-based discovery of a metabolite that enhances oligodendrocyte maturation. Nature chemical biology 14 (1) (2017)