Sandra E Orchard (S Orchard, Sandra Orchard)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Topics

Network Analysis

Genome Wide Association

Gas Chromatography

Ulcerative Colitis

Top Venues

Journal of proteome research

Nature genetics

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research (2024)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Panni Simona, Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra E Orchard
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study. Database : the journal of biological databases and curation 2023 (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Bálint Mészáros, Andras Hatos, Nicolas Palopoli, Federica Quaglia, Edoardo Salladini, Kim Van Roey, Haribabu Arthanari, Zsuzsanna Dosztányi, Isabella C Felli, Patrick D Fischer, Jeffrey C Hoch, Cy Michael Jeffries, Sonia Longhi, Emiliano Maiani, Sandra E Orchard, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Iva Pritisanac, Luiggi Tenorio, Thibault Viennet, Peter Tompa, Wim F Vranken, Silvio C E Tosatto, Norman E Davey
Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions. Nature methods (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M Keane, Gerard Kleywegt, Andrew Leach, Mariia Levchenko, Sarah Morgan, Ellen M McDonagh, Sandra E Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Barbara Zdrazil, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic acids research (2022)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Cecilia Lindskog, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Siqi Liu, Nuno Bandeira, Yi-Ju Chen, Tiannan Guo, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project. Journal of proteome research (2022)
Shirin C C Saverimuttu, Barbara Kramarz, Milagros Rodríguez-López, Penelope Garmiri, Helen Attrill, Katherine E Thurlow, Marios Makris, Sandra de Miranda Pinheiro, Sandra E Orchard, Ruth C Lovering
Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases. Database : the journal of biological databases and curation 2021 (2022)
Noemi Del Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit H M Meldal, Colin Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu, Bálint Mészáros, Xavier Watkins, Sangya Pundir, Luana Licata, Marta Iannuccelli, Matteo Pellegrini, Maria Jesus Martin, Simona Panni, Margaret Duesbury, Sylvain D Vallet, Juri Rappsilber, Sylvie Ricard-Blum, Gianni Cesareni, Lukasz Salwinski, Sandra E Orchard, Pablo Porras, Kalpana Panneerselvam, Henning Hermjakob
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic acids research (2021)
Birgit H M Meldal, Livia Perfetto, Colin Combe, Tiago Lubiana, João Vitor Ferreira Cavalcante, Hema Bye-A-Jee, Andra Waagmeester, Noemi Del-Toro, Anjali Shrivastava, Elisabeth Barrera, Edith Wong, Bernhard Mlecnik, Gabriela Bindea, Kalpana Panneerselvam, Egon L Wilighagen, Juri Rappsilber, Pablo Porras, Henning Hermjakob, Sandra E Orchard
Complex Portal 2022: new curation frontiers. Nucleic acids research (2021)
Pablo Porras, Elisabet Barrera, Alan Bridge, Noemi Del-Toro, Gianni Cesareni, Margaret Duesbury, Henning Hermjakob, Marta Iannuccelli, Igor Jurisica, Max Kotlyar, Luana Licata, Ruth C Lovering, David John Lynn, Birgit H M Meldal, Bindu Nanduri, Kalpana Paneerselvam, Simona Panni, Chiara Pastrello, Matteo Pellegrini, Livia Perfetto, Negin Rahimzadeh, Prashansa Ratan, Sylvie Ricard-Blum, Lukasz Salwinski, Gautam Shirodkar, Anjalia Shrivastava, Sandra E Orchard
Towards a unified open access dataset of molecular interactions. Nature communications 11 (1) (2020)
Antonio J M Ribeiro, Sayoni Das, Natalie Dawson, Rossana Zaru, Sandra E Orchard, Janet M Thornton, Christine Orengo, Elton Zeqiraj, James G Murphy, Patrick A Eyers
Emerging concepts in pseudoenzyme classification, evolution, and signaling. Science signaling 12 (594) (2019)
Eric W Deutsch, Lydie Lane, Christopher M Overall, Nuno Bandeira, Mark S Baker, Charles Pineau, Robert L Moritz, Fernando José Corrales, Sandra E Orchard, Jennifer E Van Eyk, Young-Ki Paik, Susan T Weintraub, Yves Vandenbrouck, Gilbert S Omenn
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. Journal of proteome research 18 (12) (2019)
Norman E Davey, M Madan Babu, Martin Blackledge, Alan Bridge, Salvador Capella, Zsuzsanna Dosztanyi, Rachel Drysdale, Richard J Edwards, Arne Elofsson, Isabella C Felli, Toby J Gibson, Aleksandras Gutmanas, John M Hancock, Jen Harrow, Desmond Higgins, Cy M Jeffries, Philippe Le Mercier, Balint Mészáros, Marco Necci, Cedric Notredame, Sandra E Orchard, Christos A Ouzounis, Rita Pancsa, Elena Papaleo, Roberta Pierattelli, Damiano Piovesan, Vasilis J Promponas, Patrick Ruch, Gabriella Rustici, Pedro Romero, Sirarat Sarntivijai, Gary Saunders, Benjamin Schuler, Malvika Sharan, Denis C Shields, Joel L Sussman, Jonathan A Tedds, Peter Tompa, Michael Turewicz, Jiri Vondrasek, Wim F Vranken, Bonnie Ann Wallace, Kanin Wichapong, Silvio C E Tosatto
An intrinsically disordered proteins community for ELIXIR. F1000Research 8 (2019)
M Sivade Dumousseau, D Alonso-López, M Ammari, G Bradley, N H Campbell, A Ceol, G Cesareni, C Combe, J De Las Rivas, N Del-Toro, J Heimbach, H Hermjakob, I Jurisica, M Koch, L Licata, R C Lovering, D J Lynn, B H M Meldal, G Micklem, S Panni, P Porras, S Ricard-Blum, B Roechert, L Salwinski, A Shrivastava, J Sullivan, N Thierry-Mieg, Y Yehudi, K Van Roey, Sandra E Orchard
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC bioinformatics 19 (1) (2018)
M Sivade Dumousseau, M Koch, A Shrivastava, D Alonso-López, J De Las Rivas, N Del-Toro, C W Combe, B H M Meldal, J Heimbach, J Rappsilber, J Sullivan, Y Yehudi, Sandra E Orchard
JAMI: a Java library for molecular interactions and data interoperability. BMC bioinformatics 19 (1) (2018)
Philippa C Griffin, Jyoti Khadake, Kate S LeMay, Suzanna E Lewis, Sandra E Orchard, Andrew Pask, Bernard Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew Treloar, Sonika Tyagi, Jeffrey H Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B Hangartner, Helen L Hayden, William W H Ho, Gabriel Keeble-Gagnère, Pasi K Korhonen, Peter Neish, Priscilla R Prestes, Mark F Richardson, Nathan S Watson-Haigh, Kelly L Wyres, Neil D Young, Maria Victoria Schneider
Best practice data life cycle approaches for the life sciences. F1000Research 6 (2017)
Philippa C Griffin, Jyoti Khadake, Kate S LeMay, Suzanna E Lewis, Sandra E Orchard, Andrew Pask, Bernard Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew Treloar, Sonika Tyagi, Jeffrey H Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B Hangartner, Helen L Hayden, William W H Ho, Gabriel Keeble-Gagnère, Pasi K Korhonen, Peter Neish, Priscilla R Prestes, Mark F Richardson, Nathan S Watson-Haigh, Kelly L Wyres, Neil D Young, Maria Victoria Schneider
Best practice data life cycle approaches for the life sciences. F1000Research (2017)
Simona Panni, Ananth Prakash, Alex Bateman, Sandra E Orchard
The yeast noncoding RNA interaction network. RNA (New York, N.Y.) 23 (10) (2017)