Juan Antonio Vizcaino (Juan A Vizcaíno, Marta Vilaseca, Juan Antonio Vizcaíno)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 59

Top Venues

Journal of proteome research

Proteomics

Nucleic acids research

Nature communications

European Bioinformatics Institute

Universidad de Salamanca (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Jan 1o 2016

United Kingdom

Proteomics Team Leader

Education History

Universidad de Salamanca Jul 1o 1998 - Apr 5o 2005

Spain

PHD :: Microbiology and Genetics

Publications

Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Mathias Walzer, Kyowon Jeong, David L Tabb, Juan Antonio Vizcaino
TopDownApp: An open and modular platform for analysis and visualisation of top-down proteomics data. Proteomics (2023)
Matthew Thakur, Annalisa Buniello, Catherine Brooksbank, Kim T Gurwitz, Matthew Hall, Matthew Hartley, David G Hulcoop, Andrew R Leach, Diana Marques, Maria Martin, Aziz Mithani, Ellen M McDonagh, Euphemia Mutasa-Gottgens, David Ochoa, Yasset Perez Riverol, James David Stephenson, Mihaly Varadi, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023. Nucleic acids research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tine Claeys, Tim Van Den Bossche, Yasset Perez Riverol, Kris Gevaert, Juan Antonio Vizcaino, Lennart Martens
lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation. Nature communications 14 (1) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
David Bouyssié, Pınar Altıner, Salvador Capella-Gutierrez, José María Fernandez, Yanick Paco Hagemeijer, Peter L Horvatovich, Martin Hubalek, Fredrik Levander, Pierluigi Mauri, Magnus Palmblad, Wolfgang Raffelsberger, Laura Rodríguez-Navas, Dario Di Silvestre, Balázs Tibor Kunkli, Julian Uszkoreit, Yves Vandenbrouck, Juan Antonio Vizcaino, Dirk Winkelhardt, Veit Schwämmle
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Filip Mundt, Nicolai J Wewer Albrechtsen, Sebastian Porsdam Mann, Peter Treit, Medini Ghodgaonkar-Steger, Martina O'Flaherty, Reinout Raijmakers, Juan Antonio Vizcaino, Albert J R Heck, Matthias Mann
Foresight in clinical proteomics: current status, ethical considerations, and future perspectives. Open research Europe 3 (2023)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Maria-Jesus Martin, Juan Antonio Vizcaino, Eric W Deutsch, Andrew R Jones
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. Journal of proteome research 21 (7) (2022)
Eric W Deutsch, Nuno Bandeira, Yasset Perez Riverol, Vagisha Sharma, Jeremy J Carver, Luis Mendoza, Deepti J Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaino
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic acids research (2022)
Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M Keane, Gerard Kleywegt, Andrew Leach, Mariia Levchenko, Sarah Morgan, Ellen M McDonagh, Sandra E Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Barbara Zdrazil, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic acids research (2022)
Andrew R Jones, Eric W Deutsch, Juan Antonio Vizcaino
Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future. Proteomics (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research (2022)
Mathias Walzer, David García-Seisdedos, Ananth Prakash, Paul Brack, Peter Crowther, Robert L Graham, Nancy George, Suhaib Mohammed, Pablo Moreno, Irene Papatheodorou, Simon J Hubbard, Juan Antonio Vizcaino
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas. Scientific data 9 (1) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Richard D LeDuc, Eric W Deutsch, Pierre-Alain Binz, Ryan T Fellers, Anthony J Cesnik, Joshua A Klein, Tim Van Den Bossche, Ralf Gabriels, Arshika Yalavarthi, Yasset Perez Riverol, Jeremy Carver, Wout Bittremieux, Shin Kawano, Benjamin Pullman, Nuno Bandeira, Neil L Kelleher, Paul M Thomas, Juan Antonio Vizcaino
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. Journal of proteome research 21 (4) (2022)
Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Silvie Fexova, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLoS computational biology 18 (6) (2022)
Yasset Perez Riverol, Jingwen Bai, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Selvakumar Kamatchinathan, Deepti J Kundu, Ananth Prakash, Anika Frericks-Zipper, Martin Eisenacher, Mathias Walzer, Shengbo Wang, Alvis Brazma, Juan Antonio Vizcaino
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Nucleic acids research (2021)
Eric W Deutsch, Yasset Perez Riverol, Jeremy Carver, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, Jim Shofstahl, Wout Bittremieux, Tytus D Mak, Joshua Klein, Yunping Zhu, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira
Universal Spectrum Identifier for mass spectra. Nature methods 18 (7) (2021)
Andrew F Jarnuczak, Hanna Najgebauer, Mitra Parissa Barzine, Deepti J Kundu, Fatemeh Ghavidel, Yasset Perez Riverol, Irene Papatheodorou, Alvis Brazma, Juan Antonio Vizcaino
An integrated landscape of protein expression in human cancer. Scientific data 8 (1) (2021)
Jingwen Bai, Chakradhar Bandla, Jiaxin Guo, Roberto Vera Alvarez, Mingze Bai, Juan Antonio Vizcaino, Pablo Moreno, Bjoern Andreas Gruening, Olivier Sallou, Yasset Perez Riverol
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers. Journal of proteome research 20 (4) (2021)
Pablo Moreno, Silvie Fexova, Nancy George, Jonathan R Manning, Zhichiao Miao, Suhaib Mohammed, Alfonso Muñoz-Pomer, Anja Füllgrabe, Yalan Bi, Natassja Bush, Haider Iqbal, Upendra Kumbham, Andrey Solovyev, Lingyun Zhao, Ananth Prakash, David García-Seisdedos, Deepti J Kundu, Shengbo Wang, Mathias Walzer, Laura Clarke, David Osumi-Sutherland, Marcela Karey Tello-Ruiz, Sunita Kumari, Doreen Ware, Jana Eliasova, Mark J Arends, Martijn C Nawijn, Kerstin Meyer, Tony Burdett, John C Marioni, Sarah Teichmann, Juan Antonio Vizcaino, Alvis Brazma, Irene Papatheodorou
Expression Atlas update: gene and protein expression in multiple species. Nucleic acids research (2021)
Thomas M Keane, Claire O'Donovan, Juan Antonio Vizcaino
The growing need for controlled data access models in clinical proteomics and metabolomics. Nature communications 12 (1) (2021)
Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Bjoern Andreas Gruening, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W Deutsch, Juan Antonio Vizcaino, Mingze Bai, Timo Sachsenberg, Lev I Levitsky, Yasset Perez Riverol
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications 12 (1) (2021)
Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlen, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc R Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael Paul Snyder, Ruedi Aebersold, Mark S Baker
A high-stringency blueprint of the human proteome. Nature communications 11 (1) (2020)
Mitra Parissa Barzine, Karlis Freivalds, James C Wright, Mārtiņš Opmanis, Darta Rituma, Fatemeh Zamanzad Ghavidel, Andrew F Jarnuczak, Edgars Celms, Kārlis Čerāns, Inge Jonassen, Lelde Lace, Juan Antonio Vizcaino, Jyoti Sharma Choudhary, Alvis Brazma, Juris Viksna
Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics 20 (21-22) (2020)
Lloyd M Smith, Paul M Thomas, Michael R Shortreed, Leah V Schaffer, Ryan T Fellers, Richard D LeDuc, Trisha Tucholski, Ying Ge, Jeffery N Agar, Lissa C Anderson, Julia Chamot-Rooke, Joseph Gault, Joseph A Loo, Ljiljana Pasa-Tolic, Carol V Robinson, Hartmut Schlüter, Yury O Tsybin, Juan Antonio Vizcaino, Juan Antonio Vizcaíno, Paul O Danis, Neil L Kelleher
A five-level classification system for proteoform identifications. Nature methods 16 (10) (2020)
Jennie R Lill, Peter A van Veelen, Stefan Tenzer, Arie Admon, Etienne Caron, Joshua E Elias, Albert J R Heck, Miguel Marcilla, Fabio Marino, Markus Müller, Bjoern Peters, Anthony Wayne Purcell, Alessandro Sette, Theo Sturm, Nicola Ternette, Juan Antonio Vizcaino, Michal Bassani-Sternberg
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). Proteomics 18 (12) (2019)
David Ochoa, Andrew F Jarnuczak, Cristina Viéitez, Maja Gehre, Margaret Soucheray, André Mateus, Askar A Kleefeldt, Anthony Hill, Luz Garcia-Alonso, Frank Stein, Nevan J Krogan, Mikhail M Savitski, Danielle L Swaney, Juan Antonio Vizcaino, Kyung-Min Noh, Pedro Beltrao
The functional landscape of the human phosphoproteome. Nature biotechnology 38 (3) (2019)
Yasset Perez-Riverol, Juan Antonio Vizcaino, Johannes Griss
Future Prospects of Spectral Clustering Approaches in Proteomics. Proteomics 18 (14) (2019)
Yasset Perez Riverol, Andrey Zorin, Gaurhari Dass, Manh-Tu Vu, Pan Xu, Mihai Glont, Juan Antonio Vizcaino, Andrew F Jarnuczak, Robert Petryszak, Peipei Ping, Henning Hermjakob
Quantifying the impact of public omics data. Nature communications 10 (1) (2019)
Eric W Deutsch, Yasset Perez Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, Emma L Schymanski, Paul Wilmes, Viktoria Dorfer, Bernhard Kuster, Pieter-Jan Volders, Nico Jehmlich, Johannes P C Vissers, Dennis W Wolan, Ana Y Wang, Luis Mendoza, Jim Shofstahl, Andrew W Dowsey, Johannes Griss, Reza M Salek, Steffen Neumann, Pierre-Alain Binz, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira, Hannes L Röst
Expanding the Use of Spectral Libraries in Proteomics. Journal of proteome research 17 (12) (2018)
Yasset Perez Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J Carroll, J Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi Del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira, Eric W Deutsch, David S Campbell, Ronald C Beavis, Reza M Salek, Ugis Sarkans, Robert Petryszak, Maria Keays, Eoin Fahy, Manish Sud, Shankar Subramaniam, Ariana Barbera, Rafael C Jiménez, Alexey I Nesvizhskii, Susanna-Assunta Sansone, Christoph Steinbeck, Rodrigo Lopez, Juan Antonio Vizcaino, Peipei Ping, Henning Hermjakob
Discovering and linking public omics data sets using the Omics Discovery Index. Nature biotechnology 35 (5) (2018)
Yasset Perez-Riverol, Tobias Ternent, Maximilian Koch, Harald Barsnes, Olga Vrousgou, Simon Jupp, Juan Antonio Vizcaino
OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets. Proteomics 17 (19) (2018)
Yasset Perez Riverol, Juan Antonio Vizcaino
Synthetic human proteomes for accelerating protein research. Nature methods 14 (3) (2018)
Juan Antonio Vizcaino, Mathias Walzer, Rafael C Jimenez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J R Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, Martin Eisenacher, Lennart Martens, Oliver Kohlbacher
A community proposal to integrate proteomics activities in ELIXIR. F1000Research 6 (2017)
Yasset Perez-Riverol, Laurent Gatto, Rui Wang, Timo Sachsenberg, Julian Uszkoreit, Felipe da Veiga Leprevost, Christian Fufezan, Tobias Ternent, Stephen J Eglen, Daniel S Katz, Tom J Pollard, Alexander Konovalov, Robert M Flight, Kai Blin, Juan Antonio Vizcaino
Ten Simple Rules for Taking Advantage of Git and GitHub. PLoS computational biology 12 (7) (2016)
Eric W Deutsch, Attila Csordas, Zhi Sun, Andrew Jarnuczak, Yasset Perez-Riverol, Tobias Ternent, David S Campbell, Manuel Bernal-Llinares, Shujiro Okuda, Shin Kawano, Robert L Moritz, Jeremy J Carver, Mingxun Wang, Yasushi Ishihama, Nuno Bandeira, Henning Hermjakob, Juan Antonio Vizcaino
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. Nucleic acids research 45 (D1) (2016)

Juan Antonio Vizcaino.css-eqlu8i{font-size:small;padding-left:4px;} (Juan A Vizcaíno, Marta Vilaseca, Juan Antonio Vizcaíno)

Publication Activity (10 Years)

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Juan Antonio Vizcaino (Juan A Vizcaíno, Marta Vilaseca, Juan Antonio Vizcaíno)