Ting-Fung Chan (Ting Fung Chan)

ResearcherID Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 43

Top Venues

The plant genome

Nature communications

Scientific reports

GigaScience

Chinese University of Hong Kong

Washington University in Saint Louis School of Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Chinese University of Hong Kong Jan 02 2014

China

Associate Professor :: School of Life Sciences

University of California San Francisco Sep 01 2003 - Oct 31 2007

United States

Postdoctoral fellow :: Cardiovascular Research Institute

Education History

Washington University in Saint Louis School of Medicine Aug 01 1998 - May 31 2003

United States

PHD

University of Wisconsin Madison Aug 01 1992 - Dec 31 1997

United States

BSC

Publications

Ki-Kei Chan, Ting-Fung Chan, William G Bendena, Jerome Ho-Lam Hui
Noncoding RNA Regulation of Hormonal and Metabolic Systems in the Fruit Fly Drosophila . Metabolites 13 (2) (2023)
Ki-Kei Chan, Ting-Fung Chan, William G Bendena, Jerome Ho-Lam Hui
Noncoding RNA Regulation of Hormonal and Metabolic Systems in the Fruit Fly Drosophila . Metabolites 13 (2) (2023)
Tri D Vuong, Liliana Florez-Palacios, Leandro Mozzoni, Michael Clubb, Chuck Quigley, Qijian Song, Shaila Kadam, Yuxuan Yuan, Ting-Fung Chan, Mohamed Abdur Rouf Mian, Henry T Nguyen
Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans. The plant genome (2023)
Wai-Shing Yung, Ting-Fung Chan, Fanjiang Kong, Hon Ming Lam
The Plant Genome special section: Epigenome and epitranscriptome in plant-environment interactions. The plant genome 16 (4) (2023)
Ki-Kei Chan, Ting-Fung Chan, William G Bendena, Jerome Ho-Lam Hui
Noncoding RNA Regulation of Hormonal and Metabolic Systems in the Fruit Fly Drosophila . Metabolites 13 (2) (2023)
Ki-Kei Chan, Ting-Fung Chan, William G Bendena, Jerome Ho-Lam Hui
Noncoding RNA Regulation of Hormonal and Metabolic Systems in the Fruit Fly Drosophila . Metabolites 13 (2) (2023)
Vanika Garg, Mohammad Aamir Waseem Khan, Kevin Fengler, Victor Llaca, Yuxuan Yuan, Tri D Vuong, Charlotte Harris, Ting-Fung Chan, Hon Ming Lam, Rajeev Kumar Varshney, Henry T Nguyen
Near-gapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research. The plant genome (2023)
Franck Dumetz, Eugene Yui-Ching Chow, Lynne M Harris, Shiau Wei Liew, Anders Jensen, Mubarak I Umar, Betty Chung, Ting-Fung Chan, Catherine J Merrick, Chun Kit Kwok
G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum. Nucleic acids research 49 (21) (2022)
Jizhou Zhang, Xiao Lin, Yuelong Chen, Tsz-Ho Li, Alan Chun-Kit Lee, Eugene Yui-Ching Chow, William Chi-Shing Cho, Ting-Fung Chan
LAFITE Reveals the Complexity of Transcript Isoforms in Subcellular Fractions. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2022)
Nana Jin, Heung-Man Lee, Yong Hou, Allen C S Yu, Jing-Woei Li, Alice P S Kong, Candice C H Lam, Simon K H Wong, Enders K W Ng, Ronald C W Ma, Juliana C N Chan, Ting-Fung Chan
Integratome analysis of adipose tissues reveals abnormal epigenetic regulation of adipogenesis, inflammation, and insulin signaling in obese individuals with type 2 diabetes. Clinical and translational medicine 11 (12) (2022)
Wenkai Han, Yuqi Cheng, Jiayang Chen, Huawen Zhong, Zhihang Hu, Siyuan Chen, Licheng Zong, Liang Hong, Ting-Fung Chan, Irwin King, Xin Gao, Yu Li
Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. Briefings in bioinformatics 23 (5) (2022)
Hongbo Wang, Hin Ting Wan, Bin Wu, Jianbo Jian, Alice H M Ng, Claire Yik-Lok Chung, Eugene Yui-Ching Chow, Jizhou Zhang, Anderson O L Wong, Keng Po Lai, Ting-Fung Chan, Eric Lu Zhang, Chris Kong Chu Wong
A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization. GigaScience 11 (2022)
Yanshuo Chen, Yixuan Wang, Yuelong Chen, Yuqi Cheng, Yumeng Wei, Yunxiang Li, Jiuming Wang, Yingying Wei, Ting-Fung Chan, Yu Li
Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis. Nature communications 13 (1) (2022)
Kaixin Lyu, Shuo-Bin Chen, Eugene Yui-Ching Chow, Haizhou Zhao, Jia-Hao Yuan, Meng Cai, Jiahai Shi, Ting-Fung Chan, Jia-Heng Tan, Chun Kit Kwok
An RNA G-Quadruplex Structure within the ADAR 5'UTR Interacts with DHX36 Helicase to Regulate Translation. Angewandte Chemie (International ed. in English) (2022)
Joyce K Y Tse, Tsz Ho Li, Jizhou Zhang, Alan Chun Kit Lee, Ivy Lee, Zhe Qu, Xiao Lin, Jerome Ho-Lam Hui, Ting-Fung Chan
Single-Cell Atlas of the Drosophila Leg Disc Identifies a Long Non-Coding RNA in Late Development. International journal of molecular sciences 23 (12) (2022)
Hongbo Wang, Hin Ting Wan, Bin Wu, Jianbo Jian, Alice H M Ng, Claire Yik-Lok Chung, Eugene Yui-Ching Chow, Jizhou Zhang, Anderson O L Wong, Keng Po Lai, Ting-Fung Chan, Eric Lu Zhang, Chris Kong Chu Wong
A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization. GigaScience 11 (2022)
Zhixia Xiao, Qianwen Wang, Man-Wah Li, Mingkun Huang, Zhili Wang, Min Xie, Rajeev Kumar Varshney, Henry T Nguyen, Ting-Fung Chan, Hon Ming Lam
Wildsoydb DataHub: a platform for accessing soybean multiomic datasets across multiple reference genomes. Plant physiology 190 (4) (2022)
Hongbo Wang, Hin Ting Wan, Bin Wu, Jianbo Jian, Alice H M Ng, Claire Yik-Lok Chung, Eugene Yui-Ching Chow, Jizhou Zhang, Anderson O L Wong, Keng Po Lai, Ting-Fung Chan, Eric Lu Zhang, Chris Kong Chu Wong
A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization. GigaScience 11 (2022)
Keng Po Lai, Delbert Almerick T Boncan, Lu Yang, Cherry Chi Tim Leung, Jeff Cheuk Hin Ho, Xiao Lin, Ting-Fung Chan, Richard Yuen Chong Kong, William Ka Fai Tse
Osmotic Gradient Is a Factor That Influences the Gill Microbiota Communities in Oryzias melastigma . Biology 11 (10) (2022)
Hongbo Wang, Hin Ting Wan, Bin Wu, Jianbo Jian, Alice H M Ng, Claire Yik-Lok Chung, Eugene Yui-Ching Chow, Jizhou Zhang, Anderson O L Wong, Keng Po Lai, Ting-Fung Chan, Eric Lu Zhang, Chris Kong Chu Wong
A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization. GigaScience 11 (2022)
Rong Li, Jiaqi Liu, Chi Tim Leung, Xiao Lin, Ting-Fung Chan, William Ka Fai Tse, Keng Po Lai
Transcriptomic Analysis in Marine Medaka Gill Reveals That the Hypo-Osmotic Stress Could Alter the Immune Response via the IL17 Signaling Pathway. International journal of molecular sciences 23 (20) (2022)
Yee-Shan Ku, Xiao Lin, Kejing Fan, Sau-Shan Cheng, Ting-Fung Chan, Gyuhwa Chung, Hon Ming Lam
The Identification of MATE Antisense Transcripts in Soybean Using Strand-Specific RNA-Seq Datasets. Genes 13 (2) (2022)
Wenyan Nong, Zhe Qu, Yiqian Li, Tom Barton-Owen, Annette Y P Wong, Ho Yin Yip, Hoi Ting Lee, Satya Narayana, Tobias Baril, Thomas Swale, Jianquan Cao, Ting-Fung Chan, Hoi Shan Kwan, Sai Ming Ngai, Gianni Panagiotou, Pei-Yuan Qian, Jian-Wen Qiu, Kevin Y Yip, Noraznawati Ismail, Siddhartha Pati, Akbar John, Stephen S Tobe, William G Bendena, Siu Gin Cheung, Alexander Hayward, Jerome Ho-Lam Hui
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Communications biology 4 (1) (2021)
Xin Wang, Man-Wah Li, Fuk-Ling Wong, Ching-Yee Luk, Claire Yik-Lok Chung, Wai-Shing Yung, Zhili Wang, Min Xie, Shikui Song, Gyuhwa Chung, Ting-Fung Chan, Hon Ming Lam
Increased copy number of gibberellin 2-oxidase 8 genes reduced trailing growth and shoot length during soybean domestication. The Plant journal : for cell and molecular biology 107 (6) (2021)
Kaixin Lyu, Eugene Yui-Ching Chow, Xi Mou, Ting-Fung Chan, Chun Kit Kwok
RNA G-quadruplexes (rG4s): genomics and biological functions. Nucleic acids research 49 (10) (2021)
Kejing Fan, Johanna W-H Wong, Xiao Lin, Meng Ni, Yee-Shan Ku, Man-Wah Li, Chang Fu Tian, Ting-Fung Chan, Hon Ming Lam
Differentially expressed microRNAs that target functional genes in mature soybean nodules. The plant genome 14 (2) (2021)
Muhammad Amjad Nawaz, Farrukh Azeem, Alexander Mikhailovich Zakharenko, Xiao Lin, Rana Muhammad Atif, Faheem Shehzad Baloch, Ting-Fung Chan, Gyuhwa Chung, Junghee Ham, Sangmi Sun, Kirill Sergeyevich Golokhvast
In-silico Exploration of Channel Type and Efflux Silicon Transporters and Silicification Proteins in 80 Sequenced Viridiplantae Genomes. Plants (Basel, Switzerland) 9 (11) (2020)
Delbert Almerick T Boncan, Stacey S K Tsang, Chade Li, Ivy H T Lee, Hon Ming Lam, Ting-Fung Chan, Jerome Ho-Lam Hui
Terpenes and Terpenoids in Plants: Interactions with Environment and Insects. International journal of molecular sciences 21 (19) (2020)
Wenyan Nong, Jianquan Cao, Yiqian Li, Zhe Qu, Jin Sun, Thomas Swale, Ho Yin Yip, Pei-Yuan Qian, Jian-Wen Qiu, Hoi Shan Kwan, William G Bendena, Stephen S Tobe, Ting-Fung Chan, Kevin Y Yip, Ka Hou Chu, Sai Ming Ngai, Karl Yk Tsim, Peter W H Holland, Jerome Ho-Lam Hui
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing. Nature communications 11 (1) (2020)
Zhe Qu, Wenyan Nong, Wai Lok So, Tom Barton-Owen, Yiqian Li, Thomas Chun Ning Leung, Chade Li, Tobias Baril, Annette Y P Wong, Thomas Swale, Ting-Fung Chan, Alexander Hayward, Sai-Ming Ngai, Jerome Ho-Lam Hui
Millipede genomes reveal unique adaptations during myriapod evolution. PLoS biology 18 (9) (2020)
Pui Yan Yeung, Jieyu Zhao, Eugene Yui-Ching Chow, Xi Mou, HuiQi Hong, Leilei Chen, Ting-Fung Chan, Chun Kit Kwok
Author Correction: Systematic evaluation and optimization of the experimental steps in RNA G-quadruplex structure sequencing. Scientific reports 10 (1) (2020)
Eugene Yui-Ching Chow, Kaixin Lyu, Chun Kit Kwok, Ting-Fung Chan
rG4-seeker enables high-confidence identification of novel and non-canonical rG4 motifs from rG4-seq experiments. RNA biology 17 (7) (2020)
Xiao Lin, Wengui Lin, Yee-Shan Ku, Fuk-Ling Wong, Man-Wah Li, Hon Ming Lam, Sai-Ming Ngai, Ting-Fung Chan
Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts. Plant physiology 182 (3) (2019)
Min Xie, Claire Yik-Lok Chung, Man-Wah Li, Fuk-Ling Wong, Xin Wang, Ailin Liu, Zhili Wang, Alden King-Yung Leung, Tin-Hang Wong, Suk-Wah Tong, Zhixia Xiao, Kejing Fan, Ming-Sin Ng, Xinpeng Qi, Linfeng Yang, Tianquan Deng, Lijuan He, Lu Chen, Aisi Fu, Qiong Ding, Junxian He, Gyuhwa Chung, Sachiko N Isobe, Takanari Tanabata, Babu Valliyodan, Henry T Nguyen, Steven B Cannon, Christine Helen Foyer, Ting-Fung Chan, Hon Ming Lam
A reference-grade wild soybean genome. Nature communications 10 (1) (2019)
Pui Yan Yeung, Jieyu Zhao, Eugene Yui-Ching Chow, Xi Mou, HuiQi Hong, Leilei Chen, Ting-Fung Chan, Chun Kit Kwok
Systematic evaluation and optimization of the experimental steps in RNA G-quadruplex structure sequencing. Scientific reports 9 (1) (2019)
Michal Levy-Sakin, Steven Pastor, Yulia Mostovoy, Le Li, Alden K Y Leung, Jennifer McCaffrey, Eleanor Young, Ernest T Lam, Alex R Hastie, Karen H Y Wong, Claire Yik-Lok Chung, Walfred Ma, Justin Sibert, Ramakrishnan Rajagopalan, Nana Jin, Eugene Y C Chow, Catherine Chu, Annie Poon, Chin Lin, Ahmed Naguib, Wei-Ping Wang, Han Cao, Ting-Fung Chan, Kevin Y Yip, Ming Xiao, Pui-Yan Kwok
Genome maps across 26 human populations reveal population-specific patterns of structural variation. Nature communications 10 (1) (2019)
Hao Qin, Norman Wai-Sing Lo, Jacky Fong-Chuen Loo, Xiao Lin, Aldrin Kay-Yuen Yim, Stephen Kwok-Wing Tsui, Terrence Chi-Kwong Lau, Margaret Ip, Ting-Fung Chan
Comparative transcriptomics of multidrug-resistant Acinetobacter baumannii in response to antibiotic treatments. Scientific reports 8 (1) (2018)
Hoi-Kuan Kong, Qing Pan, Wai-U Lo, Xuan Liu, Carmen O K Law, Ting-Fung Chan, Pak-Leung Ho, Terrence Chi-Kwong Lau
Fine-tuning carbapenem resistance by reducing porin permeability of bacteria activated in the selection process of conjugation. Scientific reports 8 (1) (2018)
Ailin Liu, Zhixia Xiao, Man-Wah Li, Fuk-Ling Wong, Wai-Shing Yung, Yee-Shan Ku, Qianwen Wang, Xin Wang, Min Xie, Aldrin Kay-Yuen Yim, Ting-Fung Chan, Hon Ming Lam
Transcriptomic reprogramming in soybean seedlings under salt stress. Plant, cell & environment 42 (1) (2018)
Jian Jiao, Meng Ni, Biliang Zhang, Ziding Zhang, J Peter W Young, Ting-Fung Chan, Wen Xin Chen, Hon Ming Lam, Chang Fu Tian
Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii. PLoS genetics 14 (5) (2018)
Chade Li, Annette Y P Wong, Shuang Wang, Qi Jia, Wen-Po Chuang, William G Bendena, Stephen S Tobe, Seung Hwan Yang, Gyuhwa Chung, Ting-Fung Chan, Hon Ming Lam, Jacqueline C Bede, Jerome Ho-Lam Hui
miRNA-Mediated Interactions in and between Plants and Insects. International journal of molecular sciences 19 (10) (2018)
Zhe Qu, William G Bendena, Wenyan Nong, Kenneth W Siggens, Fernando G Noriega, Zhen-Peng Kai, Yang-Yang Zang, Alex C Koon, Ho Yin Edwin Chan, Ting-Fung Chan, Ka Hou Chu, Hon Ming Lam, Michael Akam, Stephen S Tobe, Jerome Ho-Lam Hui
MicroRNAs regulate the sesquiterpenoid hormonal pathway in Drosophila and other arthropods. Proceedings. Biological sciences 284 (1869) (2018)
Le Li, Alden King-Yung Leung, Tsz-Piu Kwok, Yvonne Y Y Lai, Iris K Pang, Grace Tin-Yun Chung, Angel C Y Mak, Annie Poon, Catherine Chu, Menglu Li, Jacob J K Wu, Ernest T Lam, Han Cao, Chin Lin, Justin Sibert, Siu-Ming Yiu, Ming Xiao, Kwok-Wai Lo, Pui-Yan Kwok, Ting-Fung Chan, Kevin Y Yip
OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps. Genome biology 18 (1) (2017)

Ting-Fung Chan.css-eqlu8i{font-size:small;padding-left:4px;} (Ting Fung Chan)

Publication Activity (10 Years)

Top Topics

Top Venues

Ting-Fung Chan (Ting Fung Chan)