Vladimir Benes (Vladimír Beneš, V Benes)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 37

Top Venues

Nature communications

Plant physiology

Blood cancer journal

Scientific reports

EMBL

Institute of Molecular Genetics CAS (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

EMBL Oct 3o 1994

Germany

Head of Genomics Core Facility :: Scientific Core Facilities

Education History

Institute of Molecular Genetics CAS Sep 1o 1988 - May 23o 1994

Czechia

PHD

Publications

Maximilian Seidel, Natalie Romanov, Agnieszka Obarska-Kosinska, Anja Becker, Nayara Trevisan Doimo de Azevedo, Jan Provaznik, Sankarshana R Nagaraja, Jonathan J M Landry, Vladimir Benes, Martin Beck
Co-translational binding of importins to nascent proteins. Nature communications 14 (1) (2023)
Marketa Samalova, Alesia Melnikava, Kareem Elsayad, Alexis Peaucelle, Evelina Gahurova, Jaromir Gumulec, Ioannis I Spyroglou, Elena V Zemlyanskaya, Elena V Ubogoeva, Darina Balkova, Martin Demko, Nicolas Blavet, Panagiotis Alexiou, Vladimir Benes, Grégory Mouille, Jan Hejátko
Hormone-regulated expansins: expression, localization, and cell wall biomechanics in Arabidopsis root growth. Plant physiology (2023)
Laura M Pikkupeura, Raul B Bressan, Jordi Guiu, Yun Chen, Martti Maimets, Daniela Mayer, Pawel J Schweiger, Stine L Hansen, Grzegorz J Maciag, Hjalte L Larsen, Kadi Lõhmussaar, Marianne Terndrup Pedersen, Joji M Yap Teves, Jette Bornholdt, Vladimir Benes, Albin Sandelin, Kim Bak Jensen
Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation. Science advances 9 (28) (2023)
Uwe Schwartz, Maria Llamazares, Stephanie T Pohl, Mandy Richter, Raluca Tamas, Michael Schuler, Corinna Keller, Vedrana Mijosek, Thomas Muley, Marc A Schneider, Karsten Quast, Joschka Hey, Claus-Peter Heussel, Arne Warth, Hauke Winter, Özdemirhan Serçin, Harry Karmouty-Quintana, Soma Sk Jyothula, Manish K Patel, Felix Herth, Ina Koch, Giuseppe Petrosino, Alexandru Titimeaua, Balca R Mardin, Dieter Weichenhan, Tomasz P Jurkowski, Charles D Imbusch, Benedikt Brors, Vladimir Benes, Birgit Jung, David Wyatt, Heiko F Stahl, Christoph Plass, Renata Z Jurkowska
High-resolution transcriptomic and epigenetic profiling identifies novel regulators of COPD. The EMBO journal (2023)
Sebastian Cristian Treitli, Pavla Hanousková, Vladimir Benes, Andreas Brune, Ivan Čepička, Vladimír Hampl
Hydrogenotrophic methanogenesis is the key process in the obligately syntrophic consortium of the anaerobic ameba Pelomyxa schiedti. The ISME journal (2023)
Isabel Duarte, Gil Carraco, Nayara T D de Azevedo, Vladimir Benes, Raquel P Andrade
gga-miRNOME, a microRNA-sequencing dataset from chick embryonic tissues. Scientific data 9 (1) (2022)
Maximilian Seidel, Anja Becker, Filipa Pereira, Jonathan J M Landry, Nayara Trevisan Doimo de Azevedo, Claudia M Fusco, Eva Kaindl, Natalie Romanov, Janina Baumbach, Julian D Langer, Beatriz Alvarez-Castelao, Kiran Raosaheb Patil, Gerhard Hummer, Vladimir Benes, Martin Beck
Co-translational assembly orchestrates competing biogenesis pathways. Nature communications 13 (1) (2022)
Kristýna Eliášová, J Ignacio Lucas Lledó, José Horacio Grau, Miroslava Loudová, Anna A Bannikova, Katerina I Zolotareva, Vladimir Benes, Pavel Hulva, Barbora Černá Bolfíková
Contrasting levels of hybridization across the two contact zones between two hedgehog species revealed by genome-wide SNP data. Heredity 129 (5) (2022)
Ece Kartal, Thomas Sebastian Benedikt Schmidt, Esther Molina-Montes, Sandra Rodríguez-Perales, Jakob Wirbel, Oleksandr M Maistrenko, Wasiu A Akanni, Bilal Alashkar Alhamwe, Renato Jc Alves, Alfredo Carrato, Hans-Peter Erasmus, Lidia Estudillo, Fabian Finkelmeier, Anthony Fullam, Anna M Glazek, Paulina Gómez-Rubio, Rajna Hercog, Ferris Jung, Stefanie Kandels-Lewis, Stephan Kersting, Melanie Langheinrich, Mirari Márquez, Xavier Molero, Askarbek Orakov, Thea Van Rossum, Raul Torres-Ruíz, Anja Telzerow, Konrad Zych, null null, null null, Vladimir Benes, Georg Zeller, Jonel Trebicka, Francisco X Real, Núria Malats, Peer Bork
A faecal microbiota signature with high specificity for pancreatic cancer. Gut 71 (7) (2022)
Vijayan Gangadharan, Hongwei Zheng, Francisco J Taberner, Jonathan J M Landry, Timo A Nees, Jelena Pistolic, Nitin Agarwal, Deepitha Männich, Vladimir Benes, Moritz Helmstaedter, Björn Ommer, Stefan G Lechner, Thomas Kuner, Rohini Kuner
Neuropathic pain caused by miswiring and abnormal end organ targeting. Nature 606 (7912) (2022)
Thomas Sebastian Benedikt Schmidt, Simone S Li, Oleksandr M Maistrenko, Wasiu A Akanni, Luis Pedro Coelho, Sibasish Dolai, Anthony Fullam, Anna M Glazek, Rajna Hercog, Hilde Herrema, Ferris Jung, Stefanie Kandels, Askarbek Orakov, Roman Thielemann, Moritz von Stetten, Thea Van Rossum, Vladimir Benes, Thomas J Borody, Willem M De Vos, Cyriel Y Ponsioen, Max Nieuwdorp, Peer Bork
Drivers and determinants of strain dynamics following fecal microbiota transplantation. Nature medicine 28 (9) (2022)
L Mathur, Bence Szalai, N H Du, R Utharala, M Ballinger, J J M Landry, Michaël Ryckelynck, Vladimir Benes, Julio Saez-Rodriguez, Christoph A Merten
Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets. Nature communications 13 (1) (2022)
Angelo Ferreira Chora, Dora Pedroso, Eleni Kyriakou, Nadja Pejanovic, Henrique G Colaço, Raffaella Gozzelino, André Barros, Katharina Willmann, Tiago R Velho, Catarina Moita, Isa Santos, Pedro Pereira, Silvia Carvalho, Filipa Batalha Martins, João A Ferreira, Sérgio Fernandes de Almeida, Vladimir Benes, Josef Anrather, Sebastian Weis, Miguel Parreira Soares, Arie Geerlof, Jacques J C Neefjes, Michael Sattler, Ana C Messias, Ana Neves Costa, Luis Ferreira Moita
DNA damage independent inhibition of NF-kB transcription by anthracyclines. eLife 11 (2022)
Vaclav Bacovsky, Radim Čegan, Eva Tihlaříková, Vilém Neděla, Vojtěch Hudzieczek, Lubomír Smrža, Tomáš Janíček, Vladimir Benes, Roman Hobza
Chemical genetics in Silene latifolia elucidate regulatory pathways involved in gynoecium development. Journal of experimental botany 73 (8) (2022)
Irene Tirado-Gonzalez, Arnaud Descot, Devona Soetopo, Aleksandra Nevmerzhitskaya, Alexander Schäffer, Ivan-Maximiliano Kur, Ewelina Czlonka, Carolin Wachtel, Ioanna Tsoukala, Luise Müller, Anna-Lena Schäfer, Maresa Weitmann, Petra Dinse, Emily Alberto, Michèle C Buck, Jonathan J M Landry, Bianka Baying, Julia Slotta-Huspenina, Jenny Roesler, Patrick N Harter, Anne-Sophie Kubasch, Jörn Meinel, Eiman Elwakeel, Elisabeth Strack, Christine Tran Quang, Omar Abdel-Wahab, Marc Schmitz, Andreas Weigert, Tobias Schmid, Uwe Platzbecker, Vladimir Benes, Jacques Ghysdael, Halvard Bonig, Katharina S Götze, Carla V Rothlin, Sourav Ghosh, Hind Medyouf
AXL Inhibition in Macrophages Stimulates Host-versus-Leukemia Immunity and Eradicates Naïve and Treatment-Resistant Leukemia. Cancer discovery 11 (11) (2021)
Katerina Hirschfeldova, Jiri Cerny, Paulina Bozikova, Viktor Kuchtiak, Tobias Rausch, Vladimir Benes, Filip Spaniel, David Gregus, Jiri Horacek, Ladislav Vyklicky, Ales Balik
Evidence for the Association between the Intronic Haplotypes of Ionotropic Glutamate Receptors and First-Episode Schizophrenia. Journal of personalized medicine 11 (12) (2021)
Baerbel Keller, Valentina Strohmeier, Ina Harder, Susanne Unger, Kathryn J Payne, Geoffroy Andrieux, Melanie Boerries, Peter Tobias Felixberger, Jonathan J M Landry, Alexandra Nieters, Anne Rensing-Ehl, Ulrich Salzer, Natalie Frede, Susanne Usadel, Roland Elling, Carsten Speckmann, Ina Hainmann, Elizabeth Ralph, Kimberley C Gilmour, Marjolein W J Wentink, Mirjam van der Burg, Hye Sun Kuehn, Sergio D Rosenzweig, Uwe Kölsch, Horst Von Bernuth, Petra Kaiser-Labusch, Florian Gothe, Sophie Hambleton, Alexandru Daniel Vlagea, Ana Garcia Garcia, Laia Alsina, Gašper Markelj, Tadej Avčin, Julia Vasconcelos, Margarida Guedes, Jing-Ya Ding, Cheng-Lung Ku, Bella Shadur, Danielle T Avery, Nils Venhoff, Jens Thiel, Heiko Becker, Lucía Erazo-Borrás, Claudia Milena Trujillo-Vargas, Jose Luis Franco, Claire Fieschi, Satoshi Okada, Paul E Gray, Gulbu Uzel, Jean Laurent Casanova, Manfred Fliegauf, Bodo Grimbacher, Hermann Eibel, Stephan Ehl, Reinhard E Voll, Marta Rizzi, Polina Stepensky, Vladimir Benes, Cindy S Ma, Claudia Bossen, Stuart G Tangye, Klaus Warnatz
The expansion of human T-bethighCD21low B cells is T cell dependent. Science immunology 6 (64) (2021)
Vaclav Seda, Eva Hoferkova, Laura Ondrisova, Lenka Kostalova, Sonali Sharma, Tomas Loja, Gabriela Mladonicka Pavlasova, Daniel Zicha, Marie Kudlickova Peskova, Jan Krivanek, Kvetoslava Liskova, Leos Kren, Vladimir Benes, Katerina Musilova Litzmanova, Marek Borsky, Jan Oppelt, Jan Verner, Sarka Pospisilova, Yvona Brychtova, Anna Panovska, Zhi Tan, Shuxing Zhang, Michael Doubek, Katerina Amruz Cerna, Jiri Mayer, Marek Mraz
FoxO1-GAB1 axis regulates homing capacity and tonic AKT activity in chronic lymphocytic leukemia. Blood 138 (9) (2021)
Niklas Gebauer, Axel Künstner, Julius Ketzer, Hanno M Witte, Tobias Rausch, Vladimir Benes, Jürgen Zimmermann, Judith Gebauer, Hartmut Merz, Veronica Bernard, Lana Harder, Katharina Ratjen, Stefan Gesk, Wolfgang Peter, Yannik Busch, Peter Trojok, Nikolas von Bubnoff, Harald Biersack, Hauke Busch, Alfred C Feller
Genomic insights into the pathogenesis of Epstein-Barr virus-associated diffuse large B-cell lymphoma by whole-genome and targeted amplicon sequencing. Blood cancer journal 11 (5) (2021)
Sergio Triana, Dominik Vonficht, Lea Jopp-Saile, Simon Raffel, Raphael Lutz, Daniel Leonce, Magdalena Antes, Pablo Hernández-Malmierca, Diana Ordoñez-Rueda, Beáta Ramasz, Tobias Boch, Johann-Christoph Jann, Daniel Nowak, Wolf-Karsten Hofmann, Carsten Muller-Tidow, Daniel Hübschmann, Theodore Alexandrov, Vladimir Benes, Andreas Trumpp, Malte Paulsen, Lars Velten, Simon Haas
Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states. Nature immunology 22 (12) (2021)
Sonja Blasche, Yongkyu Kim, Ruben A T Mars, Daniel Machado, Maria Maansson, Eleni Kafkia, Alessio Milanese, Georg Zeller, Bas Teusink, Jens B Nielsen, Vladimir Benes, Rute Neves, Uwe Sauer, Kiran Raosaheb Patil
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community. Nature microbiology 6 (2) (2021)
Morgan Oatley, Özge Vargel Bölükbası, Valentine Svensson, Maya Shvartsman, Kerstin Ganter, Katharina Zirngibl, Polina V Pavlovich, Vladislava Milchevskaya, Vladimira Foteva, Kedar Nath Natrajan, Bianka Baying, Vladimir Benes, Kiran Raosaheb Patil, Sarah A Teichmann, Christophe Lancrin
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition. Nature communications 11 (1) (2020)
Martin Těšický, Hana Velová, Marian Novotný, Jakub Kreisinger, Vladimir Benes, Michal Vinkler
Positive selection and convergent evolution shape molecular phenotypic traits of innate immunity receptors in tits (Paridae). Molecular ecology 29 (16) (2020)
Matouš Vobořil, Tomáš Brabec, Jan Dobes, Iva Šplíchalová, Jiří Březina, Adéla Čepková, Martina Dobešová, Aigerim Aidarova, Jan Kubovčiak, Oksana Tsyklauri, Ondrej Stepanek, Vladimir Benes, Radislav Sedláček, Ludger Klein, Michal Kolář, Dominik Filipp
Toll-like receptor signaling in thymic epithelium controls monocyte-derived dendritic cell recruitment and Treg generation. Nature communications 11 (1) (2020)
Yaqing Zhang, David Kuster, Tobias T Schmidt, Daniel Kirrmaier, Gabriele Nübel, David Ibberson, Vladimir Benes, Hans Hombauer, Michael Knop, Andres Jäschke
Extensive 5'-surveillance guards against non-canonical NAD-caps of nuclear mRNAs in yeast. Nature communications 11 (1) (2020)
Gianluca Farrugia, Maria Azzopardi, Christian Saliba, Godfrey Grech, Angelina S Gross, Jelena Pistolic, Vladimir Benes, Neville Vassallo, Joseph Borg, Frank Madeo, Tobias Eisenberg, Rena Balzan
Aspirin impairs acetyl-coenzyme A metabolism in redox-compromised yeast cells. Scientific reports 9 (1) (2019)
Bruno Arcà, Alessio Colantoni, Carmine Fiorillo, Francesco Severini, Vladimir Benes, Marco Di Luca, Raffaele A Calogero, Fabrizio Lombardo
MicroRNAs from saliva of anopheline mosquitoes mimic human endogenous miRNAs and may contribute to vector-host-pathogen interactions. Scientific reports 9 (1) (2019)
Krzysztof Szade, Monika Żukowska, Agata Szade, Witold Norbert Nowak, Izabella Skulimowska, Maciej Ciesla, Karolina Bukowska-Strakova, Gunsagar Singh Gulati, Neli Kachamakova-Trojanowska, Anna Kusienicka, Elisa Einwallner, Jacek Kijowski, Szymon Czauderna, Harald Esterbauer, Vladimir Benes, Irving L Weissman, Jozef Dulak, Alicja Józkowicz
Heme oxygenase-1 deficiency triggers exhaustion of hematopoietic stem cells. EMBO reports 21 (2) (2019)
Stephani Baum, Eva-Maria Reimer-Michalski, Anthony Bolger, Andrea J Mantai, Vladimir Benes, Björn Usadel, Uwe Conrath
Isolation of Open Chromatin Identifies Regulators of Systemic Acquired Resistance. Plant physiology 181 (2) (2019)
Tomoyoshi Yamano, Jan Dobes, Matouš Vobořil, Madlen Steinert, Tomáš Brabec, Natalia Ziętara, Martina Dobešová, Caspar Ohnmacht, Martti Laan, Part Peterson, Vladimir Benes, Radislav Sedláček, Rikinari Hanayama, Michal Kolář, Ludger Klein, Dominik Filipp
Aire-expressing ILC3-like cells in the lymph node display potent APC features. The Journal of experimental medicine 216 (5) (2019)
Trang Schneider, Anthony Bolger, Jürgen Zeier, Sabine Preiskowski, Vladimir Benes, Sandra Trenkamp, Björn Usadel, Eva M Farré, Shizue Matsubara
Fluctuating Light Interacts with Time of Day and Leaf Development Stage to Reprogram Gene Expression. Plant physiology 179 (4) (2019)
Ashley D Sanders, Sascha Meiers, Maryam Ghareghani, David Porubsky, Hyobin Jeong, M Alexandra C C van Vliet, Tobias Rausch, Paulina Richter-Pechańska, Joachim B Kunz, Silvia Jenni, Davide Bolognini, Gabriel M C Longo, Benjamin Raeder, Venla Kinanen, Jürgen Zimmermann, Vladimir Benes, Martin Schrappe, Balca R Mardin, Andreas E Kulozik, Beat Bornhauser, Jean-Pierre Bourquin, Tobias Marschall, Jan O Korbel
Single-cell analysis of structural variations and complex rearrangements with tri-channel processing. Nature biotechnology 38 (3) (2019)
Felix Boos, Lena Krämer, Carina Groh, Ferris Jung, Per Haberkant, Frank Stein, Florian Wollweber, Adrian Gackstatter, Eva Zöller, Martin van der Laan, Mikhail M Savitski, Vladimir Benes, Johannes M Herrmann
Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme. Nature cell biology 21 (4) (2019)
Katerina Cerna, Jan Oppelt, Vaclav Chochola, Katerina Musilova, Vaclav Seda, Gabriela Pavlasova, Lenka Radova, Maddalena Arigoni, Raffaele A Calogero, Vladimir Benes, Martin Trbusek, Yvona Brychtova, Michael Doubek, Jiri Mayer, Sarka Pospisilova, Marek Mraz
MicroRNA miR-34a downregulates FOXP1 during DNA damage response to limit BCR signalling in chronic lymphocytic leukaemia B cells. Leukemia 33 (2) (2018)
P Richter-Pechańska, J B Kunz, J Hof, M Zimmermann, Tobias Rausch, O R Bandapalli, E Orlova, G Scapinello, J C Sagi, M Stanulla, M Schrappe, G Cario, Renate Kirschner-Schwabe, C Eckert, Vladimir Benes, J O Korbel, M U Muckenthaler, A E Kulozik
Identification of a genetically defined ultra-high-risk group in relapsed pediatric T-lymphoblastic leukemia. Blood cancer journal 7 (2) (2017)
Laura Arribas-Hernández, Antonin Marchais, Christian Poulsen, Bettina Haase, Judith Hauptmann, Vladimir Benes, Gunter Meister, Peter Brodersen
The Slicer Activity of ARGONAUTE1 Is Required Specifically for the Phasing, Not Production, of Trans-Acting Short Interfering RNAs in Arabidopsis. The Plant cell 28 (7) (2016)
Christine Koehler, Paul F Sauter, Mirella Wawryszyn, Gemma Estrada Girona, Kapil Gupta, Jonathan J M Landry, Markus Hsi-Yang Fritz, Ksenija Radic, Jan-Erik Hoffmann, Zhuo A Chen, Juan Zou, Piau Siong Tan, Bence Galik, Sini Junttila, Peggy Stolt-Bergner, Giancarlo Pruneri, Attila Gyenesei, Carsten Schultz, Moritz Bosse Biskup, Hueseyin Besir, Vladimir Benes, Juri Rappsilber, Martin Jechlinger, Jan O Korbel, Imre Berger, Stefan Braese, Edward A Lemke
Genetic code expansion for multiprotein complex engineering. Nature methods 13 (12) (2016)

Vladimir Benes.css-eqlu8i{font-size:small;padding-left:4px;} (Vladimír Beneš, V Benes)

Publication Activity (10 Years)

Top Topics

Top Venues

Vladimir Benes (Vladimír Beneš, V Benes)