Kiran Raosaheb Patil (Kiran R Patil)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 43

Top Venues

Molecular systems biology

Nature communications

Science (New York, N.Y.)

Life science alliance

University of Cambridge

Technical University of Denmark (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Cambridge

United Kingdom

Director of Research :: MRC Toxicology Unit

Education History

Technical University of Denmark

Denmark

PHD

Publications

Rebecca H Boston, Rui Guan, Lajos Kalmar, Sina Beier, Emily C Horner, Nonantzin Beristain-Covarrubias, Juan Carlos Yam-Puc, Pehuén Pereyra Gerber, Luisa Faria, Anna Kuroshchenkova, Anna E Lindell, Sonja Blasche, Andrea Correa-Noguera, Anne Elmer, Caroline Saunders, Areti Bermperi, Sherly Jose, Nathalie Kingston, null null, Sofia Grigoriadou, Emily Staples, Matthew S Buckland, Sara Lear, Nicholas J Matheson, Vladimir Benes, Christine Parkinson, James E D Thaventhiran, Kiran Raosaheb Patil
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. Life science alliance 7 (4) (2024)
Rebecca H Boston, Rui Guan, Lajos Kalmar, Sina Beier, Emily C Horner, Nonantzin Beristain-Covarrubias, Juan Carlos Yam-Puc, Pehuén Pereyra Gerber, Luisa Faria, Anna Kuroshchenkova, Anna E Lindell, Sonja Blasche, Andrea Correa-Noguera, Anne Elmer, Caroline Saunders, Areti Bermperi, Sherly Jose, Nathalie Kingston, null null, Sofia Grigoriadou, Emily Staples, Matthew S Buckland, Sara Lear, Nicholas J Matheson, Vladimir Benes, Christine Parkinson, James E D Thaventhiran, Kiran Raosaheb Patil
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. Life science alliance 7 (4) (2024)
Evangelos Giampazolias, Mariana Pereira da Costa, Khiem C Lam, Kok Haw Jonathan Lim, Ana Cardoso, Cécile Piot, Probir Chakravarty, Sonja Blasche, Swara Patel, Adi Biram, Tomas Castro-Dopico, Michael D Buck, Richard Rosario Rodrigues, Gry Juul Poulsen, Susana Alejandra Palma-Duran, Neil C Rogers, Maria A Koufaki, Carlos M Minutti, Pengbo Wang, Alexander Vdovin, Bruno Frederico, Eleanor Childs, Sonia Lee, Ben Simpson, Andrea Iseppon, Sara Omenetti, Gavin P Kelly, Robert Goldstone, Emma L Nye, Alejandro Suarez-Bonnet, Simon Lawrence Priestnall, James I MacRae, Santiago Zelenay, Kiran Raosaheb Patil, Kevin Litchfield, James C Lee, Tine Jess, Romina S Goldszmid, Caetano Reis E Sousa
Vitamin D regulates microbiome-dependent cancer immunity. Science (New York, N.Y.) 384 (6694) (2024)
Evangelos Giampazolias, Mariana Pereira da Costa, Khiem C Lam, Kok Haw Jonathan Lim, Ana Cardoso, Cécile Piot, Probir Chakravarty, Sonja Blasche, Swara Patel, Adi Biram, Tomas Castro-Dopico, Michael D Buck, Richard Rosario Rodrigues, Gry Juul Poulsen, Susana Alejandra Palma-Duran, Neil C Rogers, Maria A Koufaki, Carlos M Minutti, Pengbo Wang, Alexander Vdovin, Bruno Frederico, Eleanor Childs, Sonia Lee, Ben Simpson, Andrea Iseppon, Sara Omenetti, Gavin P Kelly, Robert Goldstone, Emma L Nye, Alejandro Suarez-Bonnet, Simon Lawrence Priestnall, James I MacRae, Santiago Zelenay, Kiran Raosaheb Patil, Kevin Litchfield, James C Lee, Tine Jess, Romina S Goldszmid, Caetano Reis E Sousa
Vitamin D regulates microbiome-dependent cancer immunity. Science (New York, N.Y.) 384 (6694) (2024)
Evangelos Giampazolias, Mariana Pereira da Costa, Khiem C Lam, Kok Haw Jonathan Lim, Ana Cardoso, Cécile Piot, Probir Chakravarty, Sonja Blasche, Swara Patel, Adi Biram, Tomas Castro-Dopico, Michael D Buck, Richard Rosario Rodrigues, Gry Juul Poulsen, Susana Alejandra Palma-Duran, Neil C Rogers, Maria A Koufaki, Carlos M Minutti, Pengbo Wang, Alexander Vdovin, Bruno Frederico, Eleanor Childs, Sonia Lee, Ben Simpson, Andrea Iseppon, Sara Omenetti, Gavin P Kelly, Robert Goldstone, Emma L Nye, Alejandro Suarez-Bonnet, Simon Lawrence Priestnall, James I MacRae, Santiago Zelenay, Kiran Raosaheb Patil, Kevin Litchfield, James C Lee, Tine Jess, Romina S Goldszmid, Caetano Reis E Sousa
Vitamin D regulates microbiome-dependent cancer immunity. Science (New York, N.Y.) 384 (6694) (2024)
Evangelos Giampazolias, Mariana Pereira da Costa, Khiem C Lam, Kok Haw Jonathan Lim, Ana Cardoso, Cécile Piot, Probir Chakravarty, Sonja Blasche, Swara Patel, Adi Biram, Tomas Castro-Dopico, Michael D Buck, Richard Rosario Rodrigues, Gry Juul Poulsen, Susana Alejandra Palma-Duran, Neil C Rogers, Maria A Koufaki, Carlos M Minutti, Pengbo Wang, Alexander Vdovin, Bruno Frederico, Eleanor Childs, Sonia Lee, Ben Simpson, Andrea Iseppon, Sara Omenetti, Gavin P Kelly, Robert Goldstone, Emma L Nye, Alejandro Suarez-Bonnet, Simon Lawrence Priestnall, James I MacRae, Santiago Zelenay, Kiran Raosaheb Patil, Kevin Litchfield, James C Lee, Tine Jess, Romina S Goldszmid, Caetano Reis E Sousa
Vitamin D regulates microbiome-dependent cancer immunity. Science (New York, N.Y.) 384 (6694) (2024)
Evangelos Giampazolias, Mariana Pereira da Costa, Khiem C Lam, Kok Haw Jonathan Lim, Ana Cardoso, Cécile Piot, Probir Chakravarty, Sonja Blasche, Swara Patel, Adi Biram, Tomas Castro-Dopico, Michael D Buck, Richard Rosario Rodrigues, Gry Juul Poulsen, Susana Alejandra Palma-Duran, Neil C Rogers, Maria A Koufaki, Carlos M Minutti, Pengbo Wang, Alexander Vdovin, Bruno Frederico, Eleanor Childs, Sonia Lee, Ben Simpson, Andrea Iseppon, Sara Omenetti, Gavin P Kelly, Robert Goldstone, Emma L Nye, Alejandro Suarez-Bonnet, Simon Lawrence Priestnall, James I MacRae, Santiago Zelenay, Kiran Raosaheb Patil, Kevin Litchfield, James C Lee, Tine Jess, Romina S Goldszmid, Caetano Reis E Sousa
Vitamin D regulates microbiome-dependent cancer immunity. Science (New York, N.Y.) 384 (6694) (2024)
Rebecca H Boston, Rui Guan, Lajos Kalmar, Sina Beier, Emily C Horner, Nonantzin Beristain-Covarrubias, Juan Carlos Yam-Puc, Pehuén Pereyra Gerber, Luisa Faria, Anna Kuroshchenkova, Anna E Lindell, Sonja Blasche, Andrea Correa-Noguera, Anne Elmer, Caroline Saunders, Areti Bermperi, Sherly Jose, Nathalie Kingston, null null, Sofia Grigoriadou, Emily Staples, Matthew S Buckland, Sara Lear, Nicholas J Matheson, Vladimir Benes, Christine Parkinson, James E D Thaventhiran, Kiran Raosaheb Patil
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. Life science alliance 7 (4) (2024)
Payam Ghiaci, Paula Jouhten, Nikolay Martyushenko, Helena Roca-Mesa, Jennifer Vázquez, Dimitrios Konstantinidis, Simon Stenberg, Sergej Andrejev, Kristina Grkovska, Albert Mas, Gemma Beltran, Eivind Almaas, Kiran Raosaheb Patil, Jonas Warringer
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes. Molecular systems biology (2024)
Chrats Melkonian, Francisco Zorrilla, Inge Kjærbølling, Sonja Blasche, Daniel Machado, Mette Junge, Kim Ib Sørensen, Lene Tranberg Andersen, Kiran Raosaheb Patil, Ahmad A Zeidan
Microbial interactions shape cheese flavour formation. Nature communications 14 (1) (2023)
Chrats Melkonian, Francisco Zorrilla, Inge Kjærbølling, Sonja Blasche, Daniel Machado, Mette Junge, Kim Ib Sørensen, Lene Tranberg Andersen, Kiran Raosaheb Patil, Ahmad A Zeidan
Microbial interactions shape cheese flavour formation. Nature communications 14 (1) (2023)
Gavin D Garland, Kiran Raosaheb Patil, Suzanne D Turner, Anne E Willis
The Pioneer platform: A novel approach for selection of selective anti-cancer cytotoxic activity in bacteria through co-culturing with engineered human cells. PloS one 18 (6) (2023)
Chrats Melkonian, Francisco Zorrilla, Inge Kjærbølling, Sonja Blasche, Daniel Machado, Mette Junge, Kim Ib Sørensen, Lene Tranberg Andersen, Kiran Raosaheb Patil, Ahmad A Zeidan
Microbial interactions shape cheese flavour formation. Nature communications 14 (1) (2023)
Sander Wuyts, Renato Jc Alves, Maria Zimmermann-Kogadeeva, Suguru Nishijima, Sonja Blasche, Marja Driessen, Philipp E Geyer, Rajna Hercog, Ece Kartal, Lisa Maier, Johannes B Müller, Sarela Garcia Santamarina, Thomas Sebastian Benedikt Schmidt, Daniel C Sevin, Anja Telzerow, Peter V Treit, Tobias Wenzel, Athanasios Typas, Kiran Raosaheb Patil, Matthias Mann, Michael Kuhn, Peer Bork
Consistency across multi-omics layers in a drug-perturbed gut microbial community. Molecular systems biology (2023)
Chrats Melkonian, Francisco Zorrilla, Inge Kjærbølling, Sonja Blasche, Daniel Machado, Mette Junge, Kim Ib Sørensen, Lene Tranberg Andersen, Kiran Raosaheb Patil, Ahmad A Zeidan
Microbial interactions shape cheese flavour formation. Nature communications 14 (1) (2023)
Natalia Gabrielli, Christoniki Maga-Nteve, Eleni Kafkia, Mandy Rettel, Jakob Loeffler, Stephan Kamrad, Athanasios Typas, Kiran Raosaheb Patil
Unravelling metabolic cross-feeding in a yeast-bacteria community using 13 C-based proteomics. Molecular systems biology (2023)
Müberra Fatma Cesur, Arianna Basile, Kiran Raosaheb Patil, Tunahan Çakir
A new metabolic model of Drosophila melanogaster and the integrative analysis of Parkinson's disease. Life science alliance 6 (8) (2023)
Karin Mitosch, Martin Beyß, Panagiotis L Kastritis, Bernhard Drotleff, Katharina Nöh, Theodore Alexandrov, Kiran Raosaheb Patil, Athanasios Typas
A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella. PLoS biology 21 (8) (2023)
Christian Kost, Kiran Raosaheb Patil, Jonathan Friedman, Sarahi L Garcia, Markus Ralser
Metabolic exchanges are ubiquitous in natural microbial communities. Nature microbiology (2023)
Benjamin J Hershey, Sara Barozzi, Fabrizio Orsenigo, Simone Pompei, Fabio Iannelli, Stephan Kamrad, Vittoria Matafora, Federica Pisati, Ludovico Calabrese, Giuseppe Fragale, Giulia Salvadori, Emanuele Martini, Maria Grazia Totaro, Serena Magni, Rui Guan, Dario Parazzoli, Paolo Maiuri, Angela Bachi, Kiran Raosaheb Patil, Marco Cosentino Lagomarsino, Kristina M Havas
Clonal cooperation through soluble metabolite exchange facilitates metastatic outgrowth by modulating Allee effect. Science advances 9 (37) (2023)
Ksenija Radic Shechter, Eleni Kafkia, Katharina Zirngibl, Sylwia Gawrzak, Ashna Alladin, Daniel Machado, Christian Lüchtenborg, Daniel C Sévin, Britta Brügger, Kiran Raosaheb Patil, Martin Jechlinger
Metabolic memory underlying minimal residual disease in breast cancer. Molecular systems biology 17 (10) (2022)
Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil
Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs. PLoS computational biology 18 (4) (2022)
Daniel Machado, Kiran Raosaheb Patil
Reply to: Erroneous predictions of auxotrophies by CarveMe. Nature ecology & evolution (2022)
Eleni Kafkia, Amparo Andres-Pons, Kerstin Ganter, Markus Seiler, Tom S Smith, Anna Andrejeva, Paula Jouhten, Filipa Pereira, Catarina Franco, Anna Kuroshchenkova, Sergio Leone, Ritwick Sawarkar, Rebecca H Boston, James E D Thaventhiran, Judith Barbara Zaugg, Kathryn S Lilley, Christophe Lancrin, Martin Beck, Kiran Raosaheb Patil
Operation of a TCA cycle subnetwork in the mammalian nucleus. Science advances 8 (35) (2022)
Dimitrios Konstantinidis, Filipa Pereira, Eva-Maria Geissen, Kristina Grkovska, Eleni Kafkia, Paula Jouhten, Yongkyu Kim, Saravanan Devendran, Michael Zimmermann, Kiran Raosaheb Patil
Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion. Molecular systems biology 17 (8) (2022)
Paula Jouhten, Dimitrios Konstantinidis, Filipa Pereira, Sergej Andrejev, Kristina Grkovska, Sandra Castillo, Payam Ghiachi, Gemma Beltran, Eivind Almaas, Albert Mas, Jonas Warringer, Ramon Gonzalez, Pilar Morales, Kiran Raosaheb Patil
Predictive evolution of metabolic phenotypes using model-designed environments. Molecular systems biology 18 (10) (2022)
Filipa Pereira, Helder Lopes, Paulo Maia, Britta Meyer, Justyna Nocon, Paula Jouhten, Dimitrios Konstantinidis, Eleni Kafkia, Miguel Rocha, Peter Kötter, Isabel Rocha, Kiran Raosaheb Patil
Model-guided development of an evolutionarily stable yeast chassis. Molecular systems biology 17 (7) (2022)
Marta Rodríguez-Martínez, Jens Nielsen, Sam Dupont, Jessica Vamathevan, Beverley J Glover, Lindsey C Crosswell, Brendan Rouse, Ben F Luisi, Chris Bowler, Susan M Gasser, Detlev Arendt, Tobias J Erb, Victor de Lorenzo, Edith Heard, Kiran Raosaheb Patil
Molecular biology for green recovery-A call for action. PLoS biology 20 (4) (2022)
Stephan Kamrad, Anna E Lindell, Kiran Raosaheb Patil
Gut reaction: it's not all about enzymes. Nature metabolism 4 (10) (2022)
Hidenobu Miyazawa, Marteinn T Snaebjornsson, Nicole Prior, Eleni Kafkia, Henrik M Hammarén, Nobuko Tsuchida-Straeten, Kiran Raosaheb Patil, Martin Beck, Alexander Aulehla
Glycolytic flux-signaling controls mouse embryo mesoderm development. eLife 11 (2022)
Anna E Lindell, Maria Zimmermann-Kogadeeva, Kiran Raosaheb Patil
Multimodal interactions of drugs, natural compounds and pollutants with the gut microbiota. Nature reviews. Microbiology 20 (7) (2022)
Naomi Iris van den Berg, Daniel Machado, Sophia Santos, Isabel Rocha, Jeremy Chacón, William R Harcombe, Sara Mitri, Kiran Raosaheb Patil
Ecological modelling approaches for predicting emergent properties in microbial communities. Nature ecology & evolution 6 (7) (2022)
Lisa Maier, Camille V Goemans, Jakob Wirbel, Michael Kuhn, Claudia Eberl, Mihaela Pruteanu, Patrick Müller, Sarela Garcia Santamarina, Elisabetta Cacace, Boyao Zhang, Cordula Gekeler, Tisya Banerjee, Exene Erin Anderson, Alessio Milanese, Ulrike Loeber, Sofia Kirke Forslund-Startceva, Kiran Raosaheb Patil, Michael Zimmermann, Bärbel Stecher, Georg Zeller, Peer Bork, Athanasios Typas
Unravelling the collateral damage of antibiotics on gut bacteria. Nature 599 (7883) (2021)
Friederike Gutmann, Cosimo Jann, Filipa Pereira, Andreas Johansson, Lars M Steinmetz, Kiran Raosaheb Patil
CRISPRi screens reveal genes modulating yeast growth in lignocellulose hydrolysate. Biotechnology for biofuels 14 (1) (2021)
Michael Zimmermann, Kiran Raosaheb Patil, Athanasios Typas, Lisa Maier
Towards a mechanistic understanding of reciprocal drug-microbiome interactions. Molecular systems biology 17 (3) (2021)
Sonja Blasche, Yongkyu Kim, Ruben A T Mars, Daniel Machado, Maria Maansson, Eleni Kafkia, Alessio Milanese, Georg Zeller, Bas Teusink, Jens B Nielsen, Vladimir Benes, Rute Neves, Uwe Sauer, Kiran Raosaheb Patil
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community. Nature microbiology 6 (2) (2021)
Martina Kluenemann, Sergej Andrejev, Sonja Blasche, André Mateus, Panagiotis L Kastritis, Saravanan Devendran, Johanna Vappiani, Bernd Simon, Timothy A Scott, Eleni Kafkia, Dimitrios Konstantinidis, Katharina Zirngibl, Eleonora Mastrorilli, Manuel Banzhaf, Marie-Therese Mackmull, Felix Hövelmann, Leo Nesme, Ana Rita Brochado, Lisa Maier, Thomas Bock, Vinita Periwal, Manjeet Kumar, Yongkyu Kim, Melanie Tramontano, Carsten Schultz, Martin Beck, Janosch Hennig, Michael Zimmermann, Daniel C Sévin, Filipe Cabreiro, Mikhail M Savitski, Peer Bork, Athanasios Typas, Kiran Raosaheb Patil
Bioaccumulation of therapeutic drugs by human gut bacteria. Nature 597 (7877) (2021)
Daniel Machado, Oleksandr M Maistrenko, Sergej Andrejev, Yongkyu Kim, Peer Bork, Kaustubh R Patil, Kiran Raosaheb Patil
Polarization of microbial communities between competitive and cooperative metabolism. Nature ecology & evolution 5 (2) (2021)
Morgan Oatley, Özge Vargel Bölükbası, Valentine Svensson, Maya Shvartsman, Kerstin Ganter, Katharina Zirngibl, Polina V Pavlovich, Vladislava Milchevskaya, Vladimira Foteva, Kedar Nath Natrajan, Bianka Baying, Vladimir Benes, Kiran Raosaheb Patil, Sarah A Teichmann, Christophe Lancrin
Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition. Nature communications 11 (1) (2020)
Ana Mencher, Pilar Morales, Eva Valero, Jordi Tronchoni, Kiran Raosaheb Patil, Ramon Gonzalez
Proteomic characterization of extracellular vesicles produced by several wine yeast species. Microbial biotechnology 13 (5) (2020)
Christian Lieven, Moritz Emanuel Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinglu, Gregory L Medlock, Jonathan M Monk, Jens B Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran Raosaheb Patil, Mark G Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology 38 (3) (2020)
Joana C Xavier, Kiran Raosaheb Patil, Isabel Rocha
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes. PLoS computational biology 14 (11) (2018)
Melanie Tramontano, Sergej Andrejev, Mihaela Pruteanu, Martina Klünemann, Michael Kuhn, Marco Galardini, Paula Jouhten, Aleksej Zelezniak, Georg Zeller, Peer Bork, Athanasios Typas, Kiran Raosaheb Patil
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies. Nature microbiology 3 (4) (2018)

Kiran Raosaheb Patil.css-eqlu8i{font-size:small;padding-left:4px;} (Kiran R Patil)

Publication Activity (10 Years)

Top Topics

Top Venues

Kiran Raosaheb Patil (Kiran R Patil)