Luke Zappia

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 15

Top Topics

Gene Expression

High Throughput

Top Venues

Research square

Nature medicine

Nature reviews. Genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel B Burkhardt, Robrecht Cannoodt, Daniel C Strobl, Nikolay S Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael E Vinyard, D S Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Borisovna Botvinnik, Louise Deconinck, Kai Waldrant, null null, Jonathan M Bloom, Angela Oliveira Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Lukas Heumos, Philipp Ehmele, Tim Treis, Julius Upmeier Zu Belzen, Eljas Roellin, Lilly May, Altana Namsaraeva, Nastassya Horlava, Vladimir A Shitov, Xinyue Zhang, Luke Zappia, Rainer Knoll, Niklas J Lang, Leon Hetzel, Isaac Virshup, Lisa Sikkema, Fabiola Curion, Roland Eils, Herbert B Schiller, Anne Hilgendorff, Fabian Joachim Theis
An open-source framework for end-to-end analysis of electronic health record data. Nature medicine (2024)
Malte Daniel Luecken, Scott A Gigante, Daniel Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay Markov, Luke Zappia, Giovanni Palla, Wesley Lewis, Daniel Dimitrov, Michael Vinyard, Daniel Magruder, Alma Andersson, Emma Dann, Qian Qin, Dominik J Otto, Michal Klein, Olga Botvinnik, Louise Deconinck, Kai Waldrant, Bastian Rieck, Constantin Ahlmann-Eltze, Eduardo da Veiga Beltrame, Andrew Benz, Carmen Bravo González-Blas, Ann Chen, Benjamin DeMeo, Can Ergen, Swann Floc'hlay, Adam Gayoso, Stephanie C Hicks, Yuge Ji, Vitalii Kleshchevnikov, Gioele La Manno, Maximilian Lombardo, Romain Lopez, Dario Righelli, Hirak Sarkar, Valentine Svensson, Alexander Tong, Galen Xing, Chenling Xu, Jonathan Bloom, Angela Pisco, Julio Saez-Rodriguez, Drausin Wulsin, Luca Pinello, Yvan Saeys, Fabian Joachim Theis, Smita Krishnaswamy
Defining and benchmarking open problems in single-cell analysis. Research square (2024)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Karin Hrovatin, Aimée Bastidas-Ponce, Mostafa Bakhti, Luke Zappia, Maren Büttner, Ciro Salinno, Michael Sterr, Anika Böttcher, Adriana Migliorini, Heiko Lickert, Fabian Joachim Theis
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas. Nature metabolism (2023)
Carlo de Donno, Soroor Hediyeh-Zadeh, Amir Ali Moinfar, Marco Wagenstetter, Luke Zappia, Mohammad Lotfollahi, Fabian Joachim Theis
Population-level integration of single-cell datasets enables multi-scale analysis across samples. Nature methods (2023)
Lukas Heumos, Anna C Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia, Malte Daniel Luecken, Daniel C Strobl, Juan Henao, Fabiola Curion, null null, Herbert B Schiller, Fabian Joachim Theis
Best practices for single-cell analysis across modalities. Nature reviews. Genetics (2023)
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel C Strobl, Tessa E Gillett, Luke Zappia, Elo Madissoon, Nikolay S Markov, Laure-Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore C A Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal Inecik, Manu Jain, Theodore S Kapellos, Tessa M Kole, Sylvie Leroy, Christoph H Mayr, Amanda J Oliver, Michael von Papen, Lance Peter, Chase J Taylor, Thomas Walzthoeni, Chuan Xu, Linh T Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J Gutierrez, Lukas Heumos, Ni Huang, Ignacio L Ibarra, Nathan D Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-López, Kyle J Travaglini, Anna Wilbrey-Clark, Kaylee B Worlock, Masahiro Yoshida, null null, Maarten van den Berge, Yohan Bosse, Tushar J Desai, Oliver Eickelberg, Naftali Kaminski, Mark A Krasnow, Robert A Lafyatis, Marko Z Nikolić, Joseph E Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt-Rosen, Max A Seibold, Dean Sheppard, Douglas P Shepherd, Don D Sin, Hidde J Haisma, Alexander M Tsankov, Jeffrey A Whitsett, Yan Xu, Nicholas E Banovich, Pascal Barbry, Elizabeth Thu Duong, Christine S Falk, Kerstin B Meyer, Jonathan A Kropski, Dana Pe'er, Herbert B Schiller, Purushothama Rao Tata, Joachim L Schultze, Sarah A Teichmann, Alexander V Misharin, Martijn C Nawijn, Malte Daniel Luecken, Fabian Joachim Theis
An integrated cell atlas of the lung in health and disease. Nature medicine (2023)
Karin Hrovatin, Amir Ali Moinfar, Alejandro Tejada Lapuerta, Luke Zappia, Benjamin J Lengerich, Manolis Kellis, Fabian Joachim Theis
Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology (2023)
Kynan T Lawlor, Luke Zappia, James Lefevre, Joo-Seop Park, Nicholas A Hamilton, Alicia Oshlack, Melissa H Little, Alexander N Combes
Nephron progenitor commitment is a stochastic process influenced by cell migration. eLife 8 (2019)
Alexander N Combes, Belinda Phipson, Kynan T Lawlor, Aude Dorison, Ralph Patrick, Luke Zappia, Richard P Harvey, Alicia Oshlack, Melissa H Little
Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk. Development (Cambridge, England) 146 (12) (2019)
Luke Zappia, Belinda Phipson, Alicia Oshlack
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database. PLoS computational biology 14 (6) (2018)
Luke Zappia, Belinda Phipson, Alicia Oshlack
Splatter: simulation of single-cell RNA sequencing data. Genome biology 18 (1) (2017)
Belinda Phipson, Luke Zappia, Alicia Oshlack
Gene length and detection bias in single cell RNA sequencing protocols. F1000Research 6 (2017)