Orit Rozenblatt-Rosen (O Rozenblatt-Rosen, Orit Rosenblatt-Rosen)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 39

Top Topics

Top Venues

Nature communications

Science (New York, N.Y.)

Nature medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Sean K Simmons, Xian Adiconis, Nathan Haywood, Jacob Parker, Zechuan Lin, Zhixiang Liao, Idil Tuncali, Aziz M Al'Khafaji, Asa Shin, Karthik A Jagadeesh, Kirk Gosik, Michael Gatzen, Jonathan T Smith, Daniel N El Kodsi, Yuliya Kuras, Clare Baecher-Allan, Geidy E Serrano, Thomas G Beach, Kiran V Garimella, Orit Rozenblatt-Rosen, Aviv Regev, Xianjun Dong, Clemens R Scherzer, Joshua Z Levin
Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data. bioRxiv : the preprint server for biology (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Sean K Simmons, Xian Adiconis, Nathan Haywood, Jacob Parker, Zechuan Lin, Zhixiang Liao, Idil Tuncali, Aziz M Al'Khafaji, Asa Shin, Karthik A Jagadeesh, Kirk Gosik, Michael Gatzen, Jonathan T Smith, Daniel N El Kodsi, Yuliya Kuras, Clare Baecher-Allan, Geidy E Serrano, Thomas G Beach, Kiran V Garimella, Orit Rozenblatt-Rosen, Aviv Regev, Xianjun Dong, Clemens R Scherzer, Joshua Z Levin
Experimental and Computational Methods for Allelic Imbalance Analysis from Single-Nucleus RNA-seq Data. bioRxiv : the preprint server for biology (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology 25 (8) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Jiarui Ding, John J Garber, Amiko Uchida, Ariel Lefkovith, Grace T Carter, Praveen Vimalathas, Lauren Canha, Michael Dougan, Kyle Staller, Joseph Yarze, Toni Marie Delorey, Orit Rozenblatt-Rosen, Orr Ashenberg, Daniel B Graham, Jacques Deguine, Aviv Regev, Ramnik J Xavier
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission. Nature communications 15 (1) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology 25 (8) (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology (2024)
Pratiksha I Thakore, Alexandra Schnell, Linglin Huang, Maryann Zhao, Yu Hou, Elena Christian, Sarah Zaghouani, Chao Wang, Vasundhara Singh, Anvita Singaraju, Rajesh Kumar Krishnan, Deneen Kozoriz, Sai Ma, Venkat Sankar, Samuele Notarbartolo, Jason D Buenrostro, Federica Sallusto, Nikolaos A Patsopoulos, Orit Rozenblatt-Rosen, Vijay K Kuchroo, Aviv Regev
BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T H 17 cells. Nature immunology (2024)
Evgenij Fiskin, Gökçen Eraslan, Maria B Alora-Palli, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe, Caleb A Lareau, Helena Lau, Emily P Finan, Isabella Teixeira-Soldano, Brenna LaBere, Anne Chu, Brian Woods, Janet Chou, Michal Slyper, Julia Waldman, Sabina Islam, Lynda C Schneider, Wanda Phipatanakul, Craig Platt, Orit Rozenblatt-Rosen, Toni Marie Delorey, Jacques Deguine, Gideon P Smith, Raif S Geha, Aviv Regev, Ramnik J Xavier
Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis. bioRxiv : the preprint server for biology (2023)
Florian V De Rop, Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens, Carmen Bravo González-Blas, Domenica Marchese, Ginevra Caratù, Suresh Poovathingal, Orit Rozenblatt-Rosen, Michael Slyper, Wendy Luo, Christoph Muus, Fabiana M Duarte, Rojesh Shrestha, S Tansu Bagdatli, M Ryan Corces, Lira Mamanova, Andrew Knights, Kerstin B Meyer, Ryan M Mulqueen, Akram Taherinasab, Patrick Maschmeyer, Joern Pezoldt, Camille Lucie Germaine Lambert, Marta Iglesias, Sebastián R Najle, Zain Y Dossani, Luciano G Martelotto, Zachary Daniel Burkett, Ronald Lebofsky, José Ignacio Martin-Subero, Satish Pillai, Arnau Sebé-Pedrós, Bart Deplancke, Sarah A Teichmann, Leif S Ludwig, Theodore P Braun, Andrew C Adey, William J Greenleaf, Jason D Buenrostro, Aviv Regev, Stein Aerts, Holger Heyn
Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology (2023)
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel C Strobl, Tessa E Gillett, Luke Zappia, Elo Madissoon, Nikolay S Markov, Laure-Emmanuelle Zaragosi, Yuge Ji, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Martin Banchero, Christophe Bécavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-I Chung, Antoine Collin, Aurore C A Gay, Janine Gote-Schniering, Baharak Hooshiar Kashani, Kemal Inecik, Manu Jain, Theodore S Kapellos, Tessa M Kole, Sylvie Leroy, Christoph H Mayr, Amanda J Oliver, Michael von Papen, Lance Peter, Chase J Taylor, Thomas Walzthoeni, Chuan Xu, Linh T Bui, Carlo De Donno, Leander Dony, Alen Faiz, Minzhe Guo, Austin J Gutierrez, Lukas Heumos, Ni Huang, Ignacio L Ibarra, Nathan D Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-López, Kyle J Travaglini, Anna Wilbrey-Clark, Kaylee B Worlock, Masahiro Yoshida, null null, Maarten van den Berge, Yohan Bosse, Tushar J Desai, Oliver Eickelberg, Naftali Kaminski, Mark A Krasnow, Robert A Lafyatis, Marko Z Nikolić, Joseph E Powell, Jayaraj Rajagopal, Mauricio Rojas, Orit Rozenblatt-Rosen, Max A Seibold, Dean Sheppard, Douglas P Shepherd, Don D Sin, Hidde J Haisma, Alexander M Tsankov, Jeffrey A Whitsett, Yan Xu, Nicholas E Banovich, Pascal Barbry, Elizabeth Thu Duong, Christine S Falk, Kerstin B Meyer, Jonathan A Kropski, Dana Pe'er, Herbert B Schiller, Purushothama Rao Tata, Joachim L Schultze, Sarah A Teichmann, Alexander V Misharin, Martijn C Nawijn, Malte Daniel Luecken, Fabian Joachim Theis
An integrated cell atlas of the lung in health and disease. Nature medicine (2023)
Simon Mages, Noa Moriel, Inbal Avraham-Davidi, Evan Murray, Jan Watter, Fei Chen, Orit Rozenblatt-Rosen, Johanna Klughammer, Aviv Regev, Mor Nitzan
TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics. Nature biotechnology (2023)
Lloyd Bod, Yoon-Chul Kye, Jingwen Shi, Elena Torlai Triglia, Alexandra Schnell, Johannes Fessler, Stephen M Ostrowski, Max Y Von-Franque, Juhi R Kuchroo, Rocky M Barilla, Sarah Zaghouani, Elena Christian, Toni Marie Delorey, Kanishka Mohib, Sheng Xiao, Nadine Slingerland, Christopher J Giuliano, Orr Ashenberg, Zhaorong Li, David M Rothstein, David E Fisher, Orit Rozenblatt-Rosen, Arlene H Sharpe, Francisco J Quintana, Lionel Apetoh, Aviv Regev, Vijay K Kuchroo
B-cell-specific checkpoint molecules that regulate anti-tumour immunity. Nature (2023)
Basak Eraslan, Eric Brown, Maura Benson, Liat Amir-Zilberstein, Sung-Moo Park, Betsabeh Tusi, Vladislav Pokatayev, Cody Hecht, Novalia Pishesha, Devan Phillips, Andy Kim, Shuting Zhang, Anthony Gaca, Fadi Ghantous, Toni Marie Delorey, Jonathan Livny, Lindsey Baden, Orit Rozenblatt-Rosen, Daniel B Graham, Aviv Regev, Michael Seaman, Ann Woolley, Lisa Cosimi, Deborah Hung, Jacques Deguine, Ramnik J Xavier
Functional analyses and single cell immunoprofiling uncover sex-specific differences in SARS-CoV2 immune memory development. Research square (2022)
Sean K Simmons, Gila Lithwick-Yanai, Xian Adiconis, Florian Oberstrass, Nika Iremadze, Kathryn R Geiger-Schuller, Pratiksha I Thakore, Chris J Frangieh, Omer Barad, Gilad Almogy, Orit Rozenblatt-Rosen, Aviv Regev, Doron Lipson, Joshua Z Levin
Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing. Nature biotechnology (2022)
Ruihan Tang, Nandini Acharya, Ayshwarya Subramanian, Vinee Purohit, Marcin Tabaka, Yu Hou, Danyang He, Karen Olivia Dixon, Connor Lambden, Junrong Xia, Orit Rozenblatt-Rosen, Raymond A Sobel, Chao Wang, Aviv Regev, Ana Carrizosa Anderson, Vijay K Kuchroo
Tim-3 adapter protein Bat3 acts as an endogenous regulator of tolerogenic dendritic cell function. Science immunology 7 (69) (2022)
William L Hwang, Karthik A Jagadeesh, Jimmy A Guo, Hannah I Hoffman, Payman Yadollahpour, Jason W Reeves, Rahul Mohan, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Orr Ashenberg, Samouil L Farhi, Denis Schapiro, Prajan Divakar, Eric M Miller, Daniel R Zollinger, George Eng, Jason M Schenkel, Jennifer Su, Carina Shiau, Patrick Yu, William A Freed-Pastor, Domenic Abbondanza, Arnav Mehta, Joshua Gould, Conner Lambden, Caroline B M Porter, Alexander Tsankov, Danielle Dionne, Julia Waldman, Michael S Cuoco, Lan Nguyen, Toni Marie Delorey, Devan Phillips, Jaimie L Barth, Marina Kem, Clifton Rodrigues, Debora Ciprani, Jorge Roldan, Piotr Zelga, Vjola Jorgji, Jonathan H Chen, Zackery Ely, Daniel Zhao, Kit Fuhrman, Robin Fropf, Joseph M Beechem, Jay S Loeffler, David P Ryan, Colin D Weekes, Cristina R Ferrone, Motaz Qadan, Martin J Aryee, Rakesh K Jain, Donna S Neuberg, Jennifer Y Wo, Theodore S Hong, Ramnik Xavier, Andrew J Aguirre, Orit Rozenblatt-Rosen, Mari A Mino-Kenudson, Carlos Fernandez-Del Castillo, Andrew S Liss, David Tsai Ting, Tyler Jacks, Aviv Regev
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment. Nature genetics 54 (8) (2022)
Oana Ursu, James T Neal, Emily K Shea, Pratiksha I Thakore, Livnat Jerby, Lan Nguyen, Danielle Dionne, Celeste Diaz, Julia Bauman, Mariam Mounir Mosaad, Christian Fagre, April Lo, Maria McSharry, Andrew O Giacomelli, Seav Huong Ly, Orit Rozenblatt-Rosen, William C Hahn, Andrew J Aguirre, Alice H Berger, Aviv Regev, Jesse S Boehm
Massively parallel phenotyping of coding variants in cancer with Perturb-seq. Nature biotechnology 40 (6) (2022)
Gökçen Eraslan, Eugene Drokhlyansky, Shankara K Anand, Evgenij Fiskin, Ayshwarya Subramanian, Michal Slyper, Jiali Wang, Nicholas Van Wittenberghe, John M Rouhana, Julia Waldman, Orr Ashenberg, Monkol Lek, Danielle Dionne, Thet Su Win, Michael S Cuoco, Olena Kuksenko, Alexander M Tsankov, Philip A Branton, Jamie L Marshall, Anna Greka, Gad A Getz, Ayellet V Segrè, François Aguet, Orit Rozenblatt-Rosen, Kristin G Ardlie, Aviv Regev
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function. Science (New York, N.Y.) 376 (6594) (2022)
Sanja Vickovic, B Lötstedt, Johanna Klughammer, S Mages, Å Segerstolpe, Orit Rozenblatt-Rosen, Aviv Regev
SM-Omics is an automated platform for high-throughput spatial multi-omics. Nature communications 13 (1) (2022)
Richard K Perez, M Grace Gordon, Meena Subramaniam, Min Cheol Kim, George C Hartoularos, Sasha Targ, Yang Sun, Anton Ogorodnikov, Raymund Bueno, Andrew Lu, Mike Thompson, Nadav Rappoport, Andrew W Dahl, Cristina M Lanata, Mehrdad Matloubian, Lenka Maliskova, Serena S Kwek, Tony Li, Michal Slyper, Julia Waldman, Danielle Dionne, Orit Rozenblatt-Rosen, Lawrence Fong, Maria Dall'Era, Brunilda Balliu, Aviv Regev, Rebecca Grainger, Lindsey A Criswell, Noah A Zaitlen, Chun Jimmie Ye
Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus. Science (New York, N.Y.) 376 (6589) (2022)
Eran Hodis, Elena Torlai Triglia, John Y H Kwon, Tommaso Biancalani, Labib R Zakka, Saurabh Parkar, Jan-Christian Hütter, Lorenzo Buffoni, Toni Marie Delorey, Devan Phillips, Danielle Dionne, Lan T Nguyen, Denis Schapiro, Zoltan Maliga, Connor A Jacobson, Ayal Hendel, Orit Rozenblatt-Rosen, Martin C Mihm, Levi A Garraway, Aviv Regev
Stepwise-edited, human melanoma models reveal mutations' effect on tumor and microenvironment. Science (New York, N.Y.) 376 (6592) (2022)
Gurman Kaur, Caroline B M Porter, Orr Ashenberg, Jack Lee, Samantha J Riesenfeld, Matan Hofree, Maria Aggelakopoulou, Ayshwarya Subramanian, Subita Balaram Kuttikkatte, Kathrine E Attfield, Christiane A E Desel, Jessica L Davies, Hayley G Evans, Inbal Avraham-Davidi, Lan T Nguyen, Danielle A Dionne, Anna E Neumann, Lise Torp Jensen, Thomas R Barber, Elizabeth J Soilleux, Mary N Carrington, Gilean McVean, Orit Rozenblatt-Rosen, Aviv Regev, Lars Fugger
Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade. Nature communications 13 (1) (2022)
Toni Marie Delorey, Carly G K Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe, Domenic Abbondanza, Stephen J Fleming, Ayshwarya Subramanian, Daniel T Montoro, Karthik A Jagadeesh, Kushal K Dey, Pritha Sen, Michal Slyper, Yered H Pita-Juárez, Devan Phillips, Jana Biermann, Zohar Bloom-Ackermann, Nikolaos Barkas, Andrea Ganna, James Gomez, Johannes C Melms, Igor Katsyv, Erica Normandin, Pourya Naderi, Yury V Popov, Siddharth S Raju, Sebastian Niezen, Linus T-Y Tsai, Katherine J Siddle, Malika Sud, Victoria M Tran, Shamsudheen K Vellarikkal, Yiping Wang, Liat Amir-Zilberstein, Deepak S Atri, Joseph Beechem, Olga R Brook, Jonathan Chen, Prajan Divakar, Phylicia Dorceus, Jesse M Engreitz, Adam Essene, Donna M Fitzgerald, Robin Fropf, Steven Gazal, Joshua Gould, John Grzyb, Tyler Harvey, Jonathan Hecht, Tyler Hether, Judit Jané-Valbuena, Michael Leney-Greene, Hui Ma, Cristin McCabe, Daniel E McLoughlin, Eric M Miller, Christoph Muus, Mari Niemi, Robert Padera, Liuliu Pan, Deepti Pant, Carmel Pe'er, Jenna Pfiffner-Borges, Christopher J Pinto, Jacob Plaisted, Jason Reeves, Marty Ross, Melissa Rudy, Erroll H Rueckert, Michelle Siciliano, Alexander Sturm, Ellen Todres, Avinash Waghray, Sarah Warren, Shuting Zhang, Daniel R Zollinger, Lisa Cosimi, Rajat M Gupta, Nir Hacohen, Hanina Hibshoosh, Winston Hide, Alkes L Price, Jayaraj Rajagopal, Purushothama Rao Tata, Stefan Riedel, Gyongyi Szabo, Timothy L Tickle, Patrick T Ellinor, Deborah Hung, Pardis C Sabeti, Richard Novak, Robert Rogers, Donald E Ingber, Z Gordon Jiang, Dejan Juric, Mehrtash Babadi, Samouil L Farhi, Benjamin Izar, James R Stone, Ioannis S Vlachos, Isaac H Solomon, Orr Ashenberg, Caroline B M Porter, Bo Li, Alex K Shalek, Alexandra-Chloé Villani, Orit Rozenblatt-Rosen, Aviv Regev
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets. Nature 595 (7865) (2021)
Shahar Alon, Daniel R Goodwin, Anubhav Sinha, Asmamaw T Wassie, Fei Chen, Evan R Daugharthy, Yosuke Bando, Atsushi Kajita, Andrew G Xue, Karl Marrett, Robert Prior, Yi Cui, Andrew C Payne, Chun-Chen Yao, Ho-Jun Suk, Ru Wang, Chih-Chieh Jay Yu, Paul W Tillberg, Paul L Reginato, Nikita Pak, Songlei Liu, Sukanya Punthambaker, Eswar P R Iyer, Richie E Kohman, Jeremy A Miller, Ed S Lein, Ana Lako, Nicole Cullen, Scott Rodig, Karla Helvie, Daniel L Abravanel, Nikhil Wagle, Bruce E Johnson, Johanna Klughammer, Michal Slyper, Julia Waldman, Judit Jané-Valbuena, Orit Rozenblatt-Rosen, Aviv Regev, null null, George M Church, Adam H Marblestone, Edward S Boyden
Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems. Science (New York, N.Y.) 371 (6528) (2021)
Karen Olivia Dixon, Marcin Tabaka, Markus A Schramm, Sheng Xiao, Ruihan Tang, Danielle Dionne, Ana Carrizosa Anderson, Orit Rozenblatt-Rosen, Aviv Regev, Vijay K Kuchroo
TIM-3 restrains anti-tumour immunity by regulating inflammasome activation. Nature 595 (7865) (2021)
Livnat Jerby, Cyril Neftel, Marni E Shore, Hannah R Weisman, Nathan D Mathewson, Matthew J McBride, Brian Haas, Benjamin Izar, Angela Volorio, Gaylor Boulay, Luisa Cironi, Alyssa R Richman, Liliane C Broye, Joseph M Gurski, Christina C Luo, Ravindra Mylvaganam, Lan Nguyen, Shaolin Mei, Johannes C Melms, Christophe Georgescu, Ofir Cohen, Jorge E Buendia-Buendia, Asa Segerstolpe, Malika Sud, Michael S Cuoco, Danny Labes, Simon Gritsch, Daniel R Zollinger, Nicole Ortogero, Joseph M Beechem, G Petur Nielsen, Ivan Chebib, Tu Nguyen-Ngoc, Michael Montemurro, Gregory M Cote, Edwin Choy, Igor Letovanec, Stephane Cherix, Nikhil Wagle, Peter Karl Sorger, Alex B Haynes, John T Mullen, Ivan Stamenkovic, Miguel N Rivera, Cigall Kadoch, Kai W Wucherpfennig, Orit Rozenblatt-Rosen, Mario L Suvà, Nicolò Riggi, Aviv Regev
Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma. Nature medicine 27 (2) (2021)
Chen Zhu, Karen Olivia Dixon, Kathleen Newcomer, Guangxiang Gu, Sheng Xiao, Sarah Zaghouani, Markus A Schramm, Chao Wang, Huiyuan Zhang, Kouichiro Goto, Elena Christian, Manu Rangachari, Orit Rozenblatt-Rosen, Hitoshi Okada, Tak Mak, Meromit Singer, Aviv Regev, Vijay K Kuchroo
Tim-3 adaptor protein Bat3 is a molecular checkpoint of T cell terminal differentiation and exhaustion. Science advances 7 (18) (2021)
Laura Jardine, Simone Webb, Issac Goh, Mariana Quiroga Londoño, Gary Reynolds, Michael William Mather, Bayanne Olabi, Emily Stephenson, Rachel Anne Botting, David Horsfall, Justin Engelbert, Daniel Maunder, Nicole Mende, Caitlin Murnane, Emma Dann, Jim McGrath, Hamish W King, Iwo Kucinski, Rachel Queen, Christopher D Carey, Caroline Shrubsole, Elizabeth Poyner, Meghan Acres, Claire Jones, Thomas Ness, Rowen Coulthard, Natalina Elliott, Sorcha O'Byrne, Myriam Luydmila Rachelle Haltalli, John E Lawrence, Steven Lisgo, Petra Balogh, Kerstin B Meyer, Elena Prigmore, Kirsty Ambridge, Mika Sarkin Jain, Mirjana Efremova, Keir Pickard, Thomas Creasey, Jaume Bacardit, Deborah Henderson, Jonathan M Coxhead, Andrew Filby, Rafiqul Hussain, David Dixon, David McDonald, Dorin-Mirel Popescu, Monika S Kowalczyk, Bo Li, Orr Ashenberg, Marcin Tabaka, Danielle Dionne, Timothy L Tickle, Michal Slyper, Orit Rozenblatt-Rosen, Aviv Regev, Sam Behjati, Elisa Laurenti, Nicola K Wilson, Anindita Roy, Berthold Göttgens, Irene Roberts, Sarah A Teichmann, Muzlifah A Haniffa
Blood and immune development in human fetal bone marrow and Down syndrome. Nature 598 (7880) (2021)
Meng Xiao He, Michael S Cuoco, Jett Crowdis, Alice Bosma-Moody, Zhenwei Zhang, Kevin Bi, Abhay Kanodia, Mei-Ju Su, Sheng Yu Ku, Maria Mica Garcia, Amalia R Sweet, Christopher Rodman, Laura DelloStritto, Rebecca Silver, John Steinharter, Parin Shah, Benjamin Izar, Nathan C Walk, Kelly P Burke, Ziad Bakouny, Alok K Tewari, David Liu, Sabrina Y Camp, Natalie I Vokes, Keyan Salari, Jihye Park, Sébastien Vigneau, Lawrence Fong, Joshua W Russo, Xin Yuan, Steven P Balk, Himisha Beltran, Orit Rozenblatt-Rosen, Aviv Regev, Asaf Rotem, Mary-Ellen Taplin, Eliezer Van Allen
Transcriptional mediators of treatment resistance in lethal prostate cancer. Nature medicine 27 (3) (2021)
Muzlifah A Haniffa, Deanne M Taylor, Sten Linnarsson, Bruce J Aronow, Gary D Baider, Roger A Barker, Pablo G Camara, J Gray Camp, Alain Chédotal, Andrew J Copp, Heather C Etchevers, Paolo Giacobini, Berthold Göttgens, Guoji Guo, Ania Hupalowska, Kylie R James, Emily Kirby, Arnold R Kriegstein, Joakim Lundeberg, John C Marioni, Kerstin B Meyer, Kathy K Niakan, Mats Nilsson, Bayanne Olabi, Dana Pe'er, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Rahul Satija, Sarah A Teichmann, Barbara Treutlein, Roser Vento-Tormo, Simone Webb, null null
A roadmap for the Human Developmental Cell Atlas. Nature 597 (7875) (2021)
Bo Li, Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg, Yanay Rosen, Michal Slyper, Monika S Kowalczyk, Alexandra-Chloé Villani, Timothy Tickle, Nir Hacohen, Orit Rozenblatt-Rosen, Aviv Regev
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq. Nature methods 17 (8) (2020)
Michal Slyper, Caroline B M Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Christopher Smillie, Gabriela Smith-Rosario, Jingyi Wu, Danielle Dionne, Sébastien Vigneau, Judit Jané-Valbuena, Timothy L Tickle, Sara Napolitano, Mei-Ju Su, Anand G Patel, Asa Karlstrom, Simon Gritsch, Masashi Nomura, Avinash Waghray, Satyen H Gohil, Alexander M Tsankov, Livnat Jerby-Arnon, Ofir Cohen, Johanna Klughammer, Yanay Rosen, Joshua Gould, Lan Nguyen, Matan Hofree, Peter J Tramontozzi, Bo Li, Catherine J Wu, Benjamin Izar, Rizwan Haq, F Stephen Hodi, Charles H Yoon, Aaron N Hata, Suzanne J Baker, Mario L Suvà, Raphael Bueno, Elizabeth H Stover, Michael R Clay, Michael A Dyer, Natalie B Collins, Ursula A Matulonis, Nikhil Wagle, Bruce E Johnson, Asaf Rotem, Orit Rozenblatt-Rosen, Aviv Regev
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors. Nature medicine 26 (5) (2020)
Benjamin Izar, Michael Mints, Elizabeth H Stover, Isaac Wakiro, Michael S Cuoco, Idan Alter, Christopher Rodman, Rachel Leeson, Mei-Ju Su, Parin Shah, Marcin P Iwanicki, Sarah R Walker, Abhay Kanodia, Johannes C Melms, Shaolin Mei, Jia-Ren Lin, Caroline B M Porter, Michal Slyper, Julia Waldman, Livnat Jerby-Arnon, Orr Ashenberg, Titus J Brinker, Caitlin E Mills, Meri Rogava, Sébastien Vigneau, Peter Karl Sorger, Levi A Garraway, Panagiotis A Konstantinopoulos, Joyce F Liu, Ursula Matulonis, Bruce E Johnson, Orit Rozenblatt-Rosen, Asaf Rotem, Aviv Regev
A single-cell landscape of high-grade serous ovarian cancer. Nature medicine 26 (8) (2020)
Mariella G Filbin, Michael Mints, Volker Hovestadt, McKenzie L Shaw, Leah E Escalante, Nathan D Mathewson, Cyril Neftel, Nelli Frank, Kristine Pelton, Christine M Hebert, Christine Haberler, Keren Yizhak, Johannes Gojo, Kristof Egervari, Christopher Mount, Peter van Galen, Dennis M Bonal, Quang-De Nguyen, Alexander Beck, Claire Sinai, Thomas Czech, Christian Dorfer, Liliana Goumnerova, Cinzia Lavarino, Angel Montero Carcaboso, Jaume Mora, Ravindra Mylvaganam, Christina C Luo, Andreas Peyrl, Mara Popović, Amedeo A Azizi, Tracy T Batchelor, Matthew P Frosch, Maria Martinez-Lage, Mark W Kieran, Pratiti Bandopadhayay, Rameen Beroukhim, Gerhard Fritsch, Gad A Getz, Orit Rozenblatt-Rosen, Kai W Wucherpfennig, David N Louis, Michelle Monje, Irene Slavc, Keith L Ligon, Todd R Golub, Aviv Regev, Bradley E Bernstein, Mario L Suvà
Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science (New York, N.Y.) 360 (6386) (2018)
Michael J T Stubbington, Orit Rozenblatt-Rosen, Aviv Regev, Sarah A Teichmann
Single-cell transcriptomics to explore the immune system in health and disease. Science (New York, N.Y.) 358 (6359) (2018)