Yoseph Barash

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 32

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Cancer research

PLoS genetics

University of Pennsylvania

Hebrew University of Jerusalem (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pennsylvania

United States

Assistant Professor :: Genetics, Computer and Information Science

Education History

Hebrew University of Jerusalem

Israel

PHD :: Computer Science

Publications

David Wang, Matthew R Gazzara, San Jewell, Benjamin Wales-McGrath, Christopher D Brown, Peter S Choi, Yoseph Barash
A Deep Dive into Statistical Modeling of RNA Splicing QTLs Reveals New Variants that Explain Neurodegenerative Disease. bioRxiv : the preprint server for biology (2024)
Manuel Torres-Diz, Clara Reglero, Catherine D Falkenstein, Annette Castro, Katharina E Hayer, Caleb M Radens, Mathieu Quesnel-Vallieres, Zhiwei Ang, Priyanka Sehgal, Marilyn M Li, Yoseph Barash, Sarah K Tasian, Adolfo A Ferrando, Andrei Thomas-Tikhonenko
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia. Cancer research (2024)
Manuel Torres-Diz, Clara Reglero, Catherine D Falkenstein, Annette Castro, Katharina E Hayer, Caleb M Radens, Mathieu Quesnel-Vallieres, Zhiwei Ang, Priyanka Sehgal, Marilyn M Li, Yoseph Barash, Sarah K Tasian, Adolfo A Ferrando, Andrei Thomas-Tikhonenko
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia. bioRxiv : the preprint server for biology (2024)
Manuel Torres-Diz, Clara Reglero, Catherine D Falkenstein, Annette Castro, Katharina E Hayer, Caleb M Radens, Mathieu Quesnel-Vallieres, Zhiwei Ang, Priyanka Sehgal, Marilyn M Li, Yoseph Barash, Sarah K Tasian, Adolfo A Ferrando, Andrei Thomas-Tikhonenko
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia. bioRxiv : the preprint server for biology (2024)
Manuel Torres-Diz, Clara Reglero, Catherine D Falkenstein, Annette Castro, Katharina E Hayer, Caleb M Radens, Mathieu Quesnel-Vallieres, Zhiwei Ang, Priyanka Sehgal, Marilyn M Li, Yoseph Barash, Sarah K Tasian, Adolfo A Ferrando, Andrei Thomas-Tikhonenko
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia. Cancer research (2024)
Manuel Torres-Diz, Clara Reglero, Catherine D Falkenstein, Annette Castro, Katharina E Hayer, Caleb M Radens, Mathieu Quesnel-Vallieres, Zhiwei Ang, Priyanka Sehgal, Marilyn M Li, Yoseph Barash, Sarah K Tasian, Adolfo A Ferrando, Andrei Thomas-Tikhonenko
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia. Cancer research (2024)
David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash
A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers. Nature communications 14 (1) (2023)
David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash
A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers. Nature communications 14 (1) (2023)
Renzo Perales-Linares, Nektaria Maria Leli, Hesham Mohei, Silvia Beghi, Osvaldo D Rivera, Nektarios Kostopoulos, Andrea Giglio, Subin S George, Mireia Uribe-Herranz, Francesca Costabile, Stefano Pierini, Sergei Pustylnikov, Giorgos Skoufos, Yoseph Barash, Artemis G Hatzigeorgiou, Constantinos Koumenis, Amit Maity, Michael T Lotze, Andrea Facciabene
Parkin deficiency suppresses antigen presentation to promote tumor immune evasion and immunotherapy resistance. Cancer research (2023)
Jorge Vaquero-Garcia, Joseph K Aicher, San Jewell, Matthew R Gazzara, Caleb M Radens, Anupama Jha, Scott S Norton, Nicholas F Lahens, Gregory R Grant, Yoseph Barash
RNA splicing analysis using heterogeneous and large RNA-seq datasets. Nature communications 14 (1) (2023)
David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash
A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers. Nature communications 14 (1) (2023)
David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash
A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers. Nature communications 14 (1) (2023)
Jorge Vaquero-Garcia, Joseph K Aicher, San Jewell, Matthew R Gazzara, Caleb M Radens, Anupama Jha, Scott S Norton, Nicholas F Lahens, Gregory R Grant, Yoseph Barash
RNA splicing analysis using heterogeneous and large RNA-seq datasets. Nature communications 14 (1) (2023)
Zhiwei Ang, Luca Paruzzo, Katharina E Hayer, Carolin Schmidt, Manuel Torres-Diz, Feng Xu, Urvi Zankharia, Yunlin Zhang, Samantha Soldan, Sisi Zheng, Catherine D Falkenstein, Joseph P Loftus, Scarlett Y Yang, Mukta Asnani, Patricia King Sainos, Vinodh Pillai, Emeline Chong, Marilyn M Li, Sarah K Tasian, Yoseph Barash, Paul M Lieberman, Marco Ruella, Stephen J Schuster, Andrei Thomas-Tikhonenko
Alternative splicing of its 5'-UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies. bioRxiv : the preprint server for biology (2023)
David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash
A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers. Nature communications 14 (1) (2023)
Zhiwei Ang, Luca Paruzzo, Katharina E Hayer, Carolin Schmidt, Manuel Torres-Diz, Feng Xu, Urvi Zankharia, Yunlin Zhang, Samantha S Soldan, Sisi Zheng, Catherine D Falkenstein, Joseph Patrick Loftus, Scarlett Y Yang, Mukta Asnani, Patricia King Sainos, Vinodh Pillai, Emeline R Chong, Marilyn M Li, Sarah K Tasian, Yoseph Barash, Paul M Lieberman, Marco Ruella, Stephen J Schuster, Andrei Thomas-Tikhonenko
Alternative splicing of its 5' UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies. Blood (2023)
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka, Christina M Fitzsimmons, Yuk Kei Wan, Farica Zhuang, Mervin M Fansler, José María Fernandez, Meritxell Ferret, Asier Gonzalez-Uriarte, Samuel Haynes, Chelsea Herdman, Alexander Kanitz, Maria Katsantoni, Federico Marini, Euan McDonnel, Benoit P Nicolet, Chi-Lam Poon, Gregor Rot, Leonard Schärfen, Pin-Jou Wu, Yoseop Yoon, Yoseph Barash, Mihaela Zavolan
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. bioRxiv : the preprint server for biology (2023)
Seong Woo Han, San Jewell, Andrei Thomas-Tikhonenko, Yoseph Barash
Contrasting and Combining Transcriptome Complexity Captured by Short and Long RNA Sequencing Reads. bioRxiv : the preprint server for biology (2023)
Jorge Vaquero-Garcia, Joseph K Aicher, San Jewell, Matthew R Gazzara, Caleb M Radens, Anupama Jha, Scott S Norton, Nicholas F Lahens, Gregory R Grant, Yoseph Barash
RNA splicing analysis using heterogeneous and large RNA-seq datasets. Nature communications 14 (1) (2023)
Sam Bryce-Smith, Dominik Burri, Matthew R Gazzara, Christina J Herrmann, Weronika Danecka, Christina M Fitzsimmons, Yuk Kei Wan, Farica Zhuang, Mervin M Fansler, José M Fernández, Meritxell Ferret, Asier Gonzalez-Uriarte, Samuel Haynes, Chelsea Herdman, Alexander Kanitz, Maria Katsantoni, Federico Marini, Euan McDonnel, Benoit P Nicolet, Chi-Lam Poon, Gregor Rot, Leonard Schärfen, Pin-Jou Wu, Yoseop Yoon, Yoseph Barash, Mihaela Zavolan
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data. RNA (New York, N.Y.) (2023)
Natoya J Peart, Taylor A Johnson, Sungkyoung Lee, Matthew J Sears, Fang Yang, Mathieu Quesnel-Vallieres, Huijuan Feng, Yocelyn Recinos, Yoseph Barash, Chaolin Zhang, Brian P Hermann, P Jeremy Wang, Christopher B Geyer, Russ P Carstens
The germ cell-specific RNA binding protein RBM46 is essential for spermatogonial differentiation in mice. PLoS genetics 18 (9) (2022)
Scarlett Y Yang, Katharina E Hayer, Hossein Fazelinia, Lynn A Spruce, Mukta Asnani, Kathryn L Black, Ammar S Naqvi, Vinodh Pillai, Yoseph Barash, Kojo S J Elenitoba-Johnson, Andrei Thomas-Tikhonenko
FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells. Blood advances (2022)
Sisi Zheng, Elisabeth Gillespie, Ammar S Naqvi, Katharina E Hayer, Zhiwei Ang, Manuel Torres-Diz, Mathieu Quesnel-Vallières, David A Hottman, Asen Bagashev, John Chukinas, Carolin Schmidt, Mukta Asnani, Rawan Shraim, Deanne M Taylor, Susan R Rheingold, Maureen M O'Brien, Nathan Singh, Kristen W Lynch, Marco Ruella, Yoseph Barash, Sarah K Tasian, Andrei Thomas-Tikhonenko
Modulation of CD22 Protein Expression in Childhood Leukemia by Pervasive Splicing Aberrations: Implications for CD22-Directed Immunotherapies. Blood cancer discovery 3 (2) (2022)
Aoi Wakabayashi, Maryanne Kihiu, Malini Sharma, A Josephine Thrasher, Megan S Saari, Mathieu Quesnel-Vallieres, Osheiza Abdulmalik, Scott A Peslak, Eugene Khandros, Cheryl A Keller, Belinda M Giardine, Yoseph Barash, Ross Cameron Hardison, Junwei Shi, Gerd A Blobel
Identification and characterization of RBM12 as a novel regulator of fetal hemoglobin expression. Blood advances 6 (23) (2022)
Olja Grgic, Matthew R Gazzara, Alessandra Chesi, Carolina Medina-Gomez, Diana L Cousminer, Jonathan A Mitchell, Vid Prijatelj, Jard de Vries, Enisa Shevroja, Shana E McCormack, Heidi J Kalkwarf, Joan M Lappe, Vicente Gilsanz, Sharon E Oberfield, John A Shepherd, Andrea Kelly, Soroosh Mahboubi, Fabio Rueda Faucz, Richard A Feelders, Frank H de Jong, Andre G Uitterlinden, Jenny A Visser, Louis R Ghanem, Eppo B Wolvius, Leo J Hofland, Constantine A Stratakis, Babette S Zemel, Yoseph Barash, Struan F A Grant, Fernando Rivadeneira
CYP11B1 variants influence skeletal maturation via alternative splicing. Communications biology 4 (1) (2021)
David S M Lee, Joseph Park, Andrew Kromer, Aris Baras, Daniel James Rader, Marylyn DeRiggi Ritchie, Louis R Ghanem, Yoseph Barash
Disrupting upstream translation in mRNAs is associated with human disease. Nature communications 12 (1) (2021)
Osvaldo D Rivera, Michael J Mallory, Mathieu Quesnel-Vallieres, Rakesh Chatrikhi, David C. Schultz, Martin P Carroll, Yoseph Barash, Sara Cherry, Kristen W Lynch
Alternative splicing redefines landscape of commonly mutated genes in acute myeloid leukemia. Proceedings of the National Academy of Sciences of the United States of America 118 (15) (2021)
Barry Slaff, Caleb M Radens, Paul Jewell, Anupama Jha, Nicholas F Lahens, Gregory R Grant, Andrei Thomas-Tikhonenko, Kristen W Lynch, Yoseph Barash
MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis. Nature communications 12 (1) (2021)
Sylvia T Nurnberg, Marie A Guerraty, Robert C Wirka, H Shanker Rao, Milos Pjanic, Scott S Norton, Felipe Serrano, Ljubica Perisic, Susannah Elwyn, John Pluta, Wei Zhao, Stephanie Testa, YoSon Park, Trieu D Nguyen, Yi-An Ko, Ting Wang, Ulf Hedin, Sanjay Sinha, Yoseph Barash, Christopher D Brown, Thomas Quertermous, Daniel James Rader
Genomic profiling of human vascular cells identifies TWIST1 as a causal gene for common vascular diseases. PLoS genetics 16 (1) (2020)
David S M Lee, Louis R Ghanem, Yoseph Barash
Integrative analysis reveals RNA G-quadruplexes in UTRs are selectively constrained and enriched for functional associations. Nature communications 11 (1) (2020)
Ingrid Ehrmann, James H Crichton, Matthew R Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaz Curk, Dirk G de Rooij, Jannetta S Steyn, Simon Cockell, Ian R Adams, Yoseph Barash, David J Elliott
An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning. eLife 8 (2019)
Jorge Vaquero-Garcia, Alejandro Barrera, Matthew R Gazzara, Juan González-Vallinas, Nicholas F Lahens, John B Hogenesch, Kristen W Lynch, Yoseph Barash
A new view of transcriptome complexity and regulation through the lens of local splicing variations. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yoseph Barash