Andrew R Jones (Andrew Jones)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 47

Top Venues

Journal of proteome research

Genetics

PLoS neglected tropical diseases

Nucleic acids research

University of Liverpool

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Liverpool Oct 01 2007

United Kingdom

Professor

Publications

Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research (2024)
Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues. Journal of proteome research 23 (6) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics 227 (1) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues. Journal of proteome research 23 (6) (2024)
Colin W Combe, Lars Kolbowski, Lutz Fischer, Ville Koskinen, Joshua A Klein, Alexander Leitner, Andrew R Jones, Juan Antonio Vizcaino, Juri Rappsilber
mzIdentML 1.3.0 - Essential progress on the support of crosslinking and other identifications based on multiple spectra. Proteomics (2024)
Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues. Journal of proteome research 23 (6) (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics 227 (1) (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics 227 (1) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics (2024)
Srayan Ghosh, Macarena Mellado Sanchez, Kawinnat Sue-Ob, Dipan Roy, Andrew R Jones, Miguel Angel Blázquez, Ari Sadanandom
Charting the evolutionary path of the SUMO modification system in plants reveals molecular hardwiring of development to stress adaptation. The Plant cell (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics 227 (1) (2024)
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew R Jones
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species. Genetics 227 (1) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues. Journal of proteome research (2024)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
TriTrypDB: An integrated functional genomics resource for kinetoplastida. PLoS neglected tropical diseases 17 (1) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
TriTrypDB: An integrated functional genomics resource for kinetoplastida. PLoS neglected tropical diseases 17 (1) (2023)
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
TriTrypDB: An integrated functional genomics resource for kinetoplastida. PLoS neglected tropical diseases 17 (1) (2023)
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
TriTrypDB: An integrated functional genomics resource for kinetoplastida. PLoS neglected tropical diseases 17 (1) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Fang Huang, Arturas Grauslys, Tuomas Huokko, Eva Caamano-Gutierrez, Andrew R Jones, Lu-Ning Liu
Dynamic Changes in the Thylakoid Proteome of Cyanobacteria during Light-Regulated Thylakoid Membrane Development. Plants (Basel, Switzerland) 12 (23) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Jorge Alvarez-Jarreta, Beatrice Amos, Cristina Aurrecoechea, Saikou Bah, Matthieu Barba, Ana Barreto, Evelina Y Basenko, Robert Belnap, Ann Blevins, Ulrike Böhme, John Brestelli, Stuart Brown, Danielle Callan, Lahcen I Campbell, George K Christophides, Kathryn Crouch, Helen R Davison, Jeremy D DeBarry, Richard Demko, Ryan Doherty, Yikun Duan, Walter Dundore, Sarah Dyer, Dave Falke, Steve Fischer, Bindu Gajria, Daniel Galdi, Gloria I Giraldo-Calderón, Omar S Harb, Elizabeth Harper, Danica Helb, Connor Howington, Sufen Hu, Jay Humphrey, John Iodice, Andrew R Jones, John Judkins, Sarah A Kelly, Jessica C Kissinger, Nupur Kittur, Dae Kun Kwon, Kristopher Lamoureux, Wei Li, Disha Lodha, Robert M MacCallum, Gareth Maslen, Mary Ann McDowell, Jeremy Myers, Mustafa Veysi Nural, David S Roos, Samuel S C Rund, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A Wilkinson, Jie Zheng
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023. Nucleic acids research (2023)
Oscar Martin Camacho, Kerry A Ramsbottom, Andrew Collins, Andrew R Jones
Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
TriTrypDB: An integrated functional genomics resource for kinetoplastida. PLoS neglected tropical diseases 17 (1) (2023)
Leonard A Daly, Dominic P Byrne, Simon Perkins, Philip J Brownridge, Euan McDonnell, Andrew R Jones, Patrick A Eyers, Claire E Eyers
Custom Workflow for the Confident Identification of Sulfotyrosine-Containing Peptides and Their Discrimination from Phosphopeptides. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Maria-Jesus Martin, Juan Antonio Vizcaino, Eric W Deutsch, Andrew R Jones
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. Journal of proteome research 21 (7) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Ananth Prakash, David García-Seisdedos, Shengbo Wang, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated View of Baseline Protein Expression in Human Tissues. Journal of proteome research 22 (3) (2022)
Anton Kalyuzhnyy, Patrick A Eyers, Claire E Eyers, Emily Bowler-Barnett, Maria J Martin, Zhi Sun, Eric W Deutsch, Andrew R Jones
Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation. Journal of proteome research 21 (6) (2022)
Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Silvie Fexova, Pablo Moreno, Irene Papatheodorou, Andrew R Jones, Juan Antonio Vizcaino
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLoS computational biology 18 (6) (2022)
Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y Basenko, Wojciech Bażant, Robert Belnap, Ann S Blevins, Ulrike Böhme, John Brestelli, Brian P Brunk, Mark X Caddick, Danielle Callan, Lahcen Campbell, Mikkel B Christensen, George K Christophides, Kathryn Crouch, Kristina Davis, Jeremy DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I Giraldo-Calderón, Omar S Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J Hickman, Connor Howington, Sufen Hu, Jay Humphrey, John Iodice, Andrew R Jones, John Judkins, Sarah A Kelly, Jessica C Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S Roos, Samuel S C Rund, Stephanie Wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J Stoeckert, Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A Wilkinson, Lin Xu, Jie Zheng
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. Nucleic acids research (2021)
Antony McCabe, Andrew R Jones
lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry. Journal of proteome research 20 (4) (2021)
Ranjeet S Bhamber, Andris Jankevics, Eric W Deutsch, Andrew R Jones, Andrew W Dowsey
mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements. Journal of proteome research 20 (1) (2020)
Nils Hoffmann, Joel Rein, Timo Sachsenberg, Jürgen Hartler, Kenneth Haug, Gerhard Mayer, Oliver Alka, Saravanan Dayalan, Jake T M Pearce, Philippe Rocca-Serra, Da Qi, Martin Eisenacher, Yasset Perez-Riverol, Juan Antonio Vizcaíno, Reza M Salek, Steffen Neumann, Andrew R Jones
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics. Analytical chemistry 91 (5) (2019)

Andrew R Jones.css-eqlu8i{font-size:small;padding-left:4px;} (Andrew Jones)

Publication Activity (10 Years)

Top Topics

Top Venues

Andrew R Jones (Andrew Jones)