Ben C Collins

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 18

Top Topics

Mass Spectrometry

Hypertrophic Cardiomyopathy

Nitric Oxide Synthase

Top Venues

Molecular systems biology

Nature communications

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Claire Tonry, Katie Linden, Patrick Collier, Mark Ledwidge, Ken McDonald, Ben C Collins, Chris J Watson
Proteomic Characterisation of Heart Failure Reveals a Unique Molecular Phenotype for Hypertrophic Cardiomyopathy. Biomedicines 12 (8) (2024)
Claire Tonry, Katie Linden, Patrick Collier, Mark Ledwidge, Ken McDonald, Ben C Collins, Chris J Watson
Proteomic Characterisation of Heart Failure Reveals a Unique Molecular Phenotype for Hypertrophic Cardiomyopathy. Biomedicines 12 (8) (2024)
Isabell Bludau, Charlotte Nicod, Claudia Martelli, Peng Xue, Moritz Heusel, Andrea Fossati, Federico Uliana, Fabian Frommelt, Ruedi Aebersold, Ben C Collins
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems. Journal of proteome research (2023)
Matteo Mori, Zhongge Zhang, Amir Banaei-Esfahani, Jean-Beno Æt Lalanne, Hiroyuki Okano, Ben C Collins, Alexander Schmidt, Olga T Schubert, Deok-Sun Lee, Gene-Wei Li, Ruedi Aebersold, Terence Hwa, Christina Ludwig
From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions. Molecular systems biology 17 (5) (2022)
Jelena Čuklina, Chloe H Lee, Evan Graehl Williams, Tatjana Sajic, Ben C Collins, María Rodríguez Martínez, Varun S Sharma, Fabian Wendt, Sandra Goetze, Gregory R Keele, Bernd Wollscheid, Ruedi Aebersold, Patrick G A Pedrioli
Diagnostics and correction of batch effects in large-scale proteomic studies: a tutorial. Molecular systems biology 17 (8) (2022)
Isabell Bludau, Max Frank, Christian Dörig, Yujia Cai, Moritz Heusel, George A Rosenberger, Paola Picotti, Ben C Collins, Hannes L Röst, Ruedi Aebersold
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. Nature communications 12 (1) (2021)
Isabell Bludau, Moritz Heusel, Max Frank, George A Rosenberger, Robin Hafen, Amir Banaei-Esfahani, Audrey van Drogen, Ben C Collins, Matthias Gstaiger, Ruedi Aebersold
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes. Nature protocols 15 (8) (2020)
Florian Meier, Andreas-David Brunner, Max Frank, Annie Ha, Isabell Bludau, Eugenia Voytik, Stephanie Kaspar-Schoenefeld, Markus Lubeck, Oliver Raether, Nicolai Bache, Ruedi Aebersold, Ben C Collins, Hannes L Röst, Matthias Mann
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition. Nature methods 17 (12) (2020)
Wenguang Shao, Tiannan Guo, Nora C Toussaint, Peng Xue, Ulrich Wagner, Li Li, Konstantina Charmpi, Yi Zhu, Jianmin Wu, Marija Buljan, Rui Sun, Dorothea Rutishauser, Thomas Hermanns, Christian Daniel Fankhauser, Cedric Poyet, Jelena Ljubicic, Niels Rupp, Jan H Rüschoff, Qing Zhong, Andreas Beyer, Jiafu Ji, Ben C Collins, Yansheng Liu, Gunnar Rätsch, Peter J Wild, Ruedi Aebersold
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nature communications 10 (1) (2019)
Moritz Heusel, Isabell Bludau, George A Rosenberger, Robin Hafen, Max Frank, Amir Banaei-Esfahani, Audrey van Drogen, Ben C Collins, Matthias Gstaiger, Ruedi Aebersold
Complex-centric proteome profiling by SEC-SWATH-MS. Molecular systems biology 15 (1) (2019)
Ben C Collins, Ruedi Aebersold
Proteomics goes parallel. Nature biotechnology 36 (11) (2019)
Julia Hülsmann, Bojana Kravic, Matthias Weith, Matthias Gstaiger, Ruedi Aebersold, Ben C Collins, Hemmo Meyer
AP-SWATH Reveals Direct Involvement of VCP/p97 in Integrated Stress Response Signaling Through Facilitating CReP/PPP1R15B Degradation. Molecular & cellular proteomics : MCP 17 (7) (2018)
Christina Ludwig, Ludovic Gillet, George A Rosenberger, Sabine Amon, Ben C Collins, Ruedi Aebersold
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial. Molecular systems biology 14 (8) (2018)
Ben C Collins, Christie L Hunter, Yansheng Liu, Birgit Schilling, George A Rosenberger, Samuel L Bader, Daniel W Chan, Bradford W Gibson, Anne-Claude Gingras, Jason M Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P Molloy, Robert L Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. Nature communications 8 (1) (2017)
Teresa Cortes, Olga T Schubert, Amir Banaei-Esfahani, Ben C Collins, Ruedi Aebersold, Douglas B Young
Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival. Scientific reports 7 (1) (2017)
George A Rosenberger, Isabell Bludau, Uwe Schmitt, Moritz Heusel, Christie L Hunter, Yansheng Liu, Michael J MacCoss, Brendan X MacLean, Alexey I Nesvizhskii, Patrick G A Pedrioli, Lukas Reiter, Hannes L Röst, Stephen Tate, Ying Sonia Ting, Ben C Collins, Ruedi Aebersold
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. Nature methods 14 (9) (2017)
George A Rosenberger, Yansheng Liu, Hannes L Röst, Christina Ludwig, Alfonso A Buil Demur, Ariel Bensimon, Martin Soste, Tim D Spector, Emmanouil T Dermitzakis, Ben C Collins, Lars Malmström, Ruedi Aebersold
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature biotechnology 35 (8) (2017)
Ruth Großeholz, Ching-Chiek Koh, Nadine Veith, Tomas Fiedler, Madlen Strauss, Brett G Olivier, Ben C Collins, Olga T Schubert, Frank Bergmann, Bernd Kreikemeyer, Ruedi Aebersold, Ursula Kummer
Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis. NPJ systems biology and applications 2 (2016)