Hannes L Röst (Hannes Röst)

ResearcherID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 33

Top Venues

Nature communications

Nature methods

Journal of proteome research

Science translational medicine

University of Toronto

Eidgenössische Technische Hochschule Zürich (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Toronto Sep 01 2017

Canada

Assistant Professor :: Molecular Genetics

Stanford University - Aug 31 2017

United States

Postdoctoral Researcher :: Department of Genetics

Eidgenössische Technische Hochschule Zürich

Switzerland

PhD student and postdoc :: Department of Biology

Education History

Eidgenössische Technische Hochschule Zürich

Switzerland

PHD :: Department of Biology

Eidgenössische Technische Hochschule Zürich

Switzerland

MSC :: Department of Computer Science

Eidgenössische Technische Hochschule Zürich

Switzerland

BSC :: Biology

Publications

Justin C Sing, Joshua Charkow, Mohammed AlHigaylan, Ira Horecka, Leon Xu, Hannes L Röst
MassDash: A Web-Based Dashboard for Data-Independent Acquisition Mass Spectrometry Visualization. Journal of proteome research (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Justin C Sing, Joshua Charkow, Mohammed AlHigaylan, Ira Horecka, Leon Xu, Hannes L Röst
MassDash: A Web-Based Dashboard for Data-Independent Acquisition Mass Spectrometry Visualization. Journal of proteome research 23 (6) (2024)
Sergi Clotet-Freixas, Olga Zaslaver, Max Kotlyar, Chiara Pastrello, Andrew T Quaile, Caitríona M McEvoy, Aninda D Saha, Sofia Farkona, Alex Boshart, Katarina Zorcic, Slaghaniya Neupane, Kieran Manion, Maya Allen, Michael Chan, Xuqi Chen, Arthur P Arnold, Peggy Sekula, Inga Steinbrenner, Anna Kottgen, Allison B Dart, Brandy Alexandra Wicklow, Jon M McGavock, Tom David Blydt-Hansen, Clara Barrios, Clara Barrios, Maria José Soler, Amandine Isenbrandt, Jérôme Lamontagne-Proulx, Solène Pradeloux, Katherine Coulombe, Denis Soulet, Shravanthi Rajasekar, Boyang Zhang, Rohan John, Aman Mehrotra, Adam J Gehring, Maija Puhka, Igor Jurisica, Minna Woo, James W Scholey, Hannes L Röst, Ana Konvalinka
Sex differences in kidney metabolism may reflect sex-dependent outcomes in human diabetic kidney disease. Science translational medicine 16 (737) (2024)
Sergi Clotet-Freixas, Olga Zaslaver, Max Kotlyar, Chiara Pastrello, Andrew T Quaile, Caitríona M McEvoy, Aninda D Saha, Sofia Farkona, Alex Boshart, Katarina Zorcic, Slaghaniya Neupane, Kieran Manion, Maya Allen, Michael Chan, Xuqi Chen, Arthur P Arnold, Peggy Sekula, Inga Steinbrenner, Anna Kottgen, Allison B Dart, Brandy Alexandra Wicklow, Jon M McGavock, Tom David Blydt-Hansen, Clara Barrios, Clara Barrios, Maria José Soler, Amandine Isenbrandt, Jérôme Lamontagne-Proulx, Solène Pradeloux, Katherine Coulombe, Denis Soulet, Shravanthi Rajasekar, Boyang Zhang, Rohan John, Aman Mehrotra, Adam J Gehring, Maija Puhka, Igor Jurisica, Minna Woo, James W Scholey, Hannes L Röst, Ana Konvalinka
Sex differences in kidney metabolism may reflect sex-dependent outcomes in human diabetic kidney disease. Science translational medicine 16 (737) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods (2024)
Sergi Clotet-Freixas, Olga Zaslaver, Max Kotlyar, Chiara Pastrello, Andrew T Quaile, Caitríona M McEvoy, Aninda D Saha, Sofia Farkona, Alex Boshart, Katarina Zorcic, Slaghaniya Neupane, Kieran Manion, Maya Allen, Michael Chan, Xuqi Chen, Arthur P Arnold, Peggy Sekula, Inga Steinbrenner, Anna Kottgen, Allison B Dart, Brandy Alexandra Wicklow, Jon M McGavock, Tom David Blydt-Hansen, Clara Barrios, Clara Barrios, Maria José Soler, Amandine Isenbrandt, Jérôme Lamontagne-Proulx, Solène Pradeloux, Katherine Coulombe, Denis Soulet, Shravanthi Rajasekar, Boyang Zhang, Rohan John, Aman Mehrotra, Adam J Gehring, Maija Puhka, Igor Jurisica, Minna Woo, James W Scholey, Hannes L Röst, Ana Konvalinka
Sex differences in kidney metabolism may reflect sex-dependent outcomes in human diabetic kidney disease. Science translational medicine 16 (737) (2024)
Shubham Gupta, Justin C Sing, Hannes L Röst
Achieving quantitative reproducibility in label-free multisite DIA experiments through multirun alignment. Communications biology 6 (1) (2023)
Brandon Y Lieng, Andrew T Quaile, Xavier Domingo-Almenara, Hannes L Röst, J Rafael Montenegro-Burke
Computational Expansion of High-Resolution-MS n Spectral Libraries. Analytical chemistry (2023)
Chetan K Chana, Pierre Maisonneuve, Ganna Posternak, Nicolas G A Grinberg, Juline Poirson, Samara M Ona, Derek F Ceccarelli, Pavel Mader, Daniel J St-Cyr, Victor Pau, Igor Kurinov, Xiaojing Tang, Dongjing Deng, Weiren Cui, Wenji Su, Letian Kuai, Richard Soll, Mike Tyers, Hannes L Röst, Robert T Batey, Mikko Taipale, Anne-Claude Gingras, Frank Sicheri
Discovery and Structural Characterization of Small Molecule Binders of the Human CTLH E3 Ligase Subunit GID4. Journal of medicinal chemistry 65 (19) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Oliver Alka, Premy Shanthamoorthy, Michael Witting, Karin Kleigrewe, Oliver Kohlbacher, Hannes L Röst
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics. Nature communications 13 (1) (2022)
Aparna Srinivasan, Justin C Sing, Anne-Claude Gingras, Hannes L Röst
Improving Phosphoproteomics Profiling Using Data-Independent Mass Spectrometry. Journal of proteome research 21 (8) (2022)
Caitríona M McEvoy, Julia M Murphy, Lin Zhang, Sergi Clotet-Freixas, Jessica A Mathews, James An, Mehran Karimzadeh, Delaram Pouyabahar, Shenghui Su, Olga Zaslaver, Hannes L Röst, Rangi Arambewela, Lewis Y Liu, Sally Zhang, Keith A Lawson, Antonio Finelli, Bo Wang, Sonya A MacParland, Gary D Baider, Ana Konvalinka, Sarah Q Crome
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity. Nature communications 13 (1) (2022)
Matthias Fahrner, Melanie Christine Föll, Bjoern Andreas Gruening, Matthias Bernt, Hannes L Röst, Oliver Schilling
Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework. GigaScience 11 (2022)
Patty Sachamitr, Jolene Caifeng Ho, Felipe E Ciamponi, Wail Ba-Alawi, Fiona J Coutinho, Paul Guilhamon, Michelle M Kushida, Florence M G Cavalli, Lilian Lee, Naghmeh Rastegar, Victoria Vu, Maria Sánchez-Osuna, Jasmin Coulombe-Huntington, Evgeny Kanshin, Heather Whetstone, Mathieu Durand, Philippe Thibault, Kirsten Hart, Maria Mangos, Joseph Veyhl, Wenjun Chen, Nhat Tran, Bang-Chi Duong, Ahmed M Aman, Xinghui Che, Xiaoyang Lan, Owen Whitley, Olga Zaslaver, Dalia Barsyte-Lovejoy, Laura M Richards, Ian J Restall, Amy A Caudy, Hannes L Röst, Zahid Quyoom Bonday, Mark Bernstein, Sunit Das, Michael D Cusimano, Julian Spears, Gary D Baider, Trevor J Pugh, Mike Tyers, Mathieu Lupien, Benjamin Haibe-Kains, H Artee Luchman, Samuel Weiss, Katlin B Massirer, Panagiotis Prinos, Cheryl H Arrowsmith, Peter B Dirks
PRMT5 inhibition disrupts splicing and stemness in glioblastoma. Nature communications 12 (1) (2021)
Isabell Bludau, Max Frank, Christian Dörig, Yujia Cai, Moritz Heusel, George A Rosenberger, Paola Picotti, Ben C Collins, Hannes L Röst, Ruedi Aebersold
Systematic detection of functional proteoform groups from bottom-up proteomic datasets. Nature communications 12 (1) (2021)
Joshua Charkow, Hannes L Röst
Trapped Ion Mobility Spectrometry Reduces Spectral Complexity in Mass Spectrometry-Based Proteomics. Analytical chemistry (2021)
Leon L Xu, Adamo Young, Audrina Zhou, Hannes L Röst
Machine Learning in Mass Spectrometric Analysis of DIA Data. Proteomics 20 (21-22) (2020)
Florian Meier, Andreas-David Brunner, Max Frank, Annie Ha, Isabell Bludau, Eugenia Voytik, Stephanie Kaspar-Schoenefeld, Markus Lubeck, Oliver Raether, Nicolai Bache, Ruedi Aebersold, Ben C Collins, Hannes L Röst, Matthias Mann
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition. Nature methods 17 (12) (2020)
Shubham Gupta, Justin Sing, Arshia Mahmoodi, Hannes L Röst
DrawAlignR: An Interactive Tool for Across Run Chromatogram Alignment Visualization. Proteomics 20 (21-22) (2020)
Mi Lai, Ying Liu, Gabriele V Ronnett, Anne Wu, Brian J Cox, Feihan F Dai, Hannes L Röst, Erica P Gunderson, Michael B Wheeler
Amino acid and lipid metabolism in post-gestational diabetes and progression to type 2 diabetes: A metabolic profiling study. PLoS medicine 17 (5) (2020)
Eric W Deutsch, Yasset Perez Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, Emma L Schymanski, Paul Wilmes, Viktoria Dorfer, Bernhard Kuster, Pieter-Jan Volders, Nico Jehmlich, Johannes P C Vissers, Dennis W Wolan, Ana Y Wang, Luis Mendoza, Jim Shofstahl, Andrew W Dowsey, Johannes Griss, Reza M Salek, Steffen Neumann, Pierre-Alain Binz, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira, Hannes L Röst
Expanding the Use of Spectral Libraries in Proteomics. Journal of proteome research 17 (12) (2018)
George A Rosenberger, Isabell Bludau, Uwe Schmitt, Moritz Heusel, Christie L Hunter, Yansheng Liu, Michael J MacCoss, Brendan X MacLean, Alexey I Nesvizhskii, Patrick G A Pedrioli, Lukas Reiter, Hannes L Röst, Stephen Tate, Ying Sonia Ting, Ben C Collins, Ruedi Aebersold
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. Nature methods 14 (9) (2017)
George A Rosenberger, Yansheng Liu, Hannes L Röst, Christina Ludwig, Alfonso A Buil Demur, Ariel Bensimon, Martin Soste, Tim D Spector, Emmanouil T Dermitzakis, Ben C Collins, Lars Malmström, Ruedi Aebersold
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature biotechnology 35 (8) (2017)
Hannes L Röst, Yansheng Liu, Giuseppe D'Agostino, Matteo Zanella, Pedro Navarro, George A Rosenberger, Ben C Collins, Ludovic Gillet, Giuseppe Testa, Lars Malmström, Ruedi Aebersold
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics. Nature methods 13 (9) (2016)
Hannes L Röst, George A Rosenberger, Pedro Navarro, Ludovic Gillet, Saša M Miladinović, Olga T Schubert, Witold Wolski, Ben C Collins, Johan Malmström, Lars Malmström, Ruedi Aebersold
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data. Nature biotechnology 32 (3) (2015)
Thomas Walzthoeni, Lukasz A Joachimiak, George A Rosenberger, Hannes L Röst, Lars Malmström, Alexander Leitner, Judith Frydman, Ruedi Aebersold
xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry. Nature methods 12 (12) (2015)
Tiannan Guo, Petri Kouvonen, Ching Chiek Koh, Ludovic C Gillet, Witold E Wolski, Hannes L Röst, George Rosenberger, Ben C Collins, Lorenz C Blum, Silke Gillessen, Markus Joerger, Wolfram Jochum, Ruedi Aebersold
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps. Nature medicine 21 (4) (2015)
Ben C Collins, Ludovic C Gillet, George Rosenberger, Hannes L Röst, Anton Vichalkovski, Matthias Gstaiger, Ruedi Aebersold
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system. Nature methods 10 (12) (2013)

Hannes L Röst.css-eqlu8i{font-size:small;padding-left:4px;} (Hannes Röst)

Publication Activity (10 Years)

Top Topics

Top Venues

Hannes L Röst (Hannes Röst)