Dirk Jan Slotboom (Dirk J Slotboom, D J Slotboom, Dirk-Jan Slotboom)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 47

Top Topics

Structural Basis

Atomic Force Microscopy

Top Venues

Nature communications

Communications biology

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Michele Partipilo, Dirk Jan Slotboom
The S-component fold: a link between bacterial transporters and receptors. Communications biology 7 (1) (2024)
Michele Partipilo, Dirk Jan Slotboom
The S-component fold: a link between bacterial transporters and receptors. Communications biology 7 (1) (2024)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Mark Nijland, Solène N Lefebvre, Chancievan Thangaratnarajah, Dirk Jan Slotboom
Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA. Nature communications 15 (1) (2024)
Mark Nijland, Solène N Lefebvre, Chancievan Thangaratnarajah, Dirk Jan Slotboom
Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA. Nature communications 15 (1) (2024)
Anna M Borowska, Maria Gabriella Chiariello, Alisa A Garaeva, Jan Rheinberger, Siewert-Jan Marrink, Cristina Paulino, Dirk Jan Slotboom
Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2. Nature communications 15 (1) (2024)
Mark Nijland, Solène N Lefebvre, Chancievan Thangaratnarajah, Dirk Jan Slotboom
Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA. Nature communications 15 (1) (2024)
Foteini Karapanagioti, Úlfur Águst Atlason, Dirk Jan Slotboom, Bert Poolman, Sebastian Obermaier
Fitness landscape of substrate-adaptive mutations in evolved amino acid-polyamine-organocation transporters. eLife 13 (2024)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia Monjas, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Author Correction: Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 7 (1) (2024)
Foteini Karapanagioti, Úlfur Águst Atlason, Dirk Jan Slotboom, Bert Poolman, Sebastian Obermaier
Fitness landscape of substrate-adaptive mutations in evolved amino acid-polyamine-organocation transporters. eLife 13 (2024)
Anna M Borowska, Maria Gabriella Chiariello, Alisa A Garaeva, Jan Rheinberger, Siewert-Jan Marrink, Cristina Paulino, Dirk Jan Slotboom
Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2. Nature communications 15 (1) (2024)
Foteini Karapanagioti, Úlfur Águst Atlason, Dirk Jan Slotboom, Bert Poolman, Sebastian Obermaier
Fitness landscape of substrate-adaptive mutations in evolved amino acid-polyamine-organocation transporters. eLife 13 (2024)
Michele Partipilo, Dirk Jan Slotboom
The S-component fold: a link between bacterial transporters and receptors. Communications biology 7 (1) (2024)
Anna M Borowska, Maria Gabriella Chiariello, Alisa A Garaeva, Jan Rheinberger, Siewert-Jan Marrink, Cristina Paulino, Dirk Jan Slotboom
Structural basis of the obligatory exchange mode of human neutral amino acid transporter ASCT2. Nature communications 15 (1) (2024)
Miyer F Patiño-Ruiz, Zaid Ramdhan Anshari, Bauke Gaastra, Dirk Jan Slotboom, Bert Poolman
Chemiosmotic nutrient transport in synthetic cells powered by electrogenic antiport coupled to decarboxylation. Nature communications 15 (1) (2024)
Chancievan Thangaratnarajah, Mark Nijland, Luís Borges-Araújo, Aike Jeucken, Jan Rheinberger, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Cristina Paulino, Dirk Jan Slotboom
Expulsion mechanism of the substrate-translocating subunit in ECF transporters. Nature communications 14 (1) (2023)
Emanuela Colucci, Zaid Ramdhan Anshari, Miyer F Patiño-Ruiz, Mariia Nemchinova, Jacob J Whittaker, Dirk Jan Slotboom, Albert Guskov
Mutation in glutamate transporter homologue GltTk provides insights into pathologic mechanism of episodic ataxia 6. Nature communications 14 (1) (2023)
Antonie J van der Zouwen, Aike Jeucken, Elske van der Pol, Gerben Boerema, Dirk Jan Slotboom, Martin D Witte
The linkage-type and the exchange molecule affect the protein-labeling efficiency of iminoboronate probes. Organic & biomolecular chemistry (2023)
Eleonora Diamanti, Paulo Cesar Telles de Souza, Inda Setyawati, Spyridon Bousis, Leticia M Gómez, Lotteke J Y M Swier, Atanaz Shams, Aleksei Tsarenko, Weronika K Stanek, Manuel Jäger, Siewert-Jan Marrink, Dirk Jan Slotboom, Anna Katharina Herta Hirsch
Identification of inhibitors targeting the energy-coupling factor (ECF) transporters. Communications biology 6 (1) (2023)
Michele Partipilo, Nico J Claassens, Dirk Jan Slotboom
A Hitchhiker's Guide to Supplying Enzymatic Reducing Power into Synthetic Cells. ACS synthetic biology (2023)
Emanuela Colucci, Zaid Ramdhan Anshari, Miyer F Patiño-Ruiz, Mariia Nemchinova, Jacob J Whittaker, Dirk Jan Slotboom, Albert Guskov
Mutation in glutamate transporter homologue GltTk provides insights into pathologic mechanism of episodic ataxia 6. Nature communications 14 (1) (2023)
Eleonora Bailoni, Michele Partipilo, Jelmer Coenradij, Douwe A J Grundel, Dirk Jan Slotboom, Bert Poolman
Minimal Out-of-Equilibrium Metabolism for Synthetic Cells: A Membrane Perspective. ACS synthetic biology (2023)
Michele Partipilo, Jacob J Whittaker, Nicola Pontillo, Jelmer Coenradij, Andreas Herrmann, Albert Guskov, Dirk Jan Slotboom
Biochemical and structural insight into the chemical resistance and cofactor specificity of the formate dehydrogenase from Starkeya novella. The FEBS journal (2023)
Sourav Maity, Gianluca Trinco, Pedro Buzón, Zaid Ramdhan Anshari, Noriyuki Kodera, Kien Xuan Ngo, Toshio Ando, Dirk Jan Slotboom, Wouter H Roos
High-speed atomic force microscopy reveals a three-state elevator mechanism in the citrate transporter CitS. Proceedings of the National Academy of Sciences of the United States of America 119 (6) (2022)
Justin D Walter, Melanie Scherer, Cedric A J Hutter, Alisa A Garaeva, Iwan Zimmermann, Marianne Wyss, Jan Rheinberger, Yelena Ruedin, Jennifer C Earp, Pascal Egloff, Michèle Sorgenfrei, Lea M Hürlimann, Imre Gonda, Gianmarco Meier, Sille Remm, Sujani Thavarasah, Geert van Geest, Remy Bruggmann, Gert Zimmer, Dirk Jan Slotboom, Cristina Paulino, Philippe Plattet, Markus A Seeger
Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance. EMBO reports 23 (4) (2022)
Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino, Dirk Jan Slotboom
Insights into the bilayer-mediated toppling mechanism of a folate-specific ECF transporter by cryo-EM. Proceedings of the National Academy of Sciences of the United States of America 118 (34) (2021)
Antonie J van der Zouwen, Aike Jeucken, Roy Steneker, Katharina F Hohmann, Jonas Lohse, Dirk Jan Slotboom, Martin D Witte
Iminoboronates as Dual-Purpose Linkers in Chemical Probe Development. Chemistry (Weinheim an der Bergstrasse, Germany) 27 (10) (2021)
Gianluca Trinco, Valentina Arkhipova, Alisa A Garaeva, Cedric A J Hutter, Markus A Seeger, Albert Guskov, Dirk Jan Slotboom
Kinetic mechanism of Na+-coupled aspartate transport catalyzed by GltTk. Communications biology 4 (1) (2021)
Rachel-Ann A Garibsingh, Elias Ndaru, Alisa A Garaeva, Yueyue Shi, Laura Zielewicz, Paul Zakrepine, Massimiliano Bonomi, Dirk Jan Slotboom, Cristina Paulino, Christof T Grewer, Avner Schlessinger
Rational design of ASCT2 inhibitors using an integrated experimental-computational approach. Proceedings of the National Academy of Sciences of the United States of America 118 (37) (2021)
Michele Partipilo, Eleanor J Ewins, Jacopo Frallicciardi, Tom Robinson, Bert Poolman, Dirk Jan Slotboom
Minimal Pathway for the Regeneration of Redox Cofactors. JACS Au 1 (12) (2021)
Inda Setyawati, Weronika K Stanek, Maria Majsnerowska, Lotteke J Y M Swier, Els Pardon, Jan Steyaert, Albert Guskov, Dirk Jan Slotboom
In vitro reconstitution of dynamically interacting integral membrane subunits of energy-coupling factor transporters. eLife 9 (2020)
Dirk Jan Slotboom, Thijs W Ettema, Mark Nijland, Chancievan Thangaratnarajah
Bacterial multi-solute transporters. FEBS letters 594 (23) (2020)
Angelika Jochim, Lea Adolf, Darya Belikova, Nadine Anna Schilling, Inda Setyawati, Denny Chin, Severien Meyers, Peter Verhamme, David E Heinrichs, Dirk Jan Slotboom, Simon Heilbronner
An ECF-type transporter scavenges heme to overcome iron-limitation in Staphylococcus lugdunensis. eLife 9 (2020)
Ignacio Faustino, Haleh Abdizadeh, Paulo C T Souza, Aike Jeucken, Weronika K Stanek, Albert Guskov, Dirk Jan Slotboom, Siewert-Jan Marrink
Membrane mediated toppling mechanism of the folate energy coupling factor transporter. Nature communications 11 (1) (2020)
Valentina Arkhipova, Albert Guskov, Dirk Jan Slotboom
Structural ensemble of a glutamate transporter homologue in lipid nanodisc environment. Nature communications 11 (1) (2020)
Christoph Thomas, Stephen G Aller, Konstantinos Beis, Elisabeth P Carpenter, Geoffrey Chang, Lei Chen, Elie Dassa, Michael Dean, Franck Duong Van Hoa, Damian Ekiert, Robert Ford, Rachelle Gaudet, Xin Gong, I Barry Holland, Yihua Huang, Daniel K Kahne, Hiroaki Kato, Vassilis Koronakis, Christopher M Koth, Youngsook Lee, Oded Lewinson, Roland Lill, Enrico Martinoia, Satoshi Murakami, Heather W Pinkett, Bert Poolman, Daniel Rosenbaum, Balazs Sarkadi, Lutz Schmitt, Erwin Schneider, Yigong Shi, Show-Ling Shyng, Dirk Jan Slotboom, Emad Tajkhorshid, D Peter Tieleman, Kazumitsu Ueda, András Váradi, Po-Chao Wen, Nieng Yan, Peng Zhang, Hongjin Zheng, Jochen Zimmer, Robert Tampé
Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters 594 (23) (2020)
Juke S Lolkema, Dirk Jan Slotboom
Models to determine the kinetic mechanisms of ion-coupled transporters. The Journal of general physiology 151 (3) (2019)
Alisa A Garaeva, Albert Guskov, Dirk Jan Slotboom, Cristina Paulino
A one-gate elevator mechanism for the human neutral amino acid transporter ASCT2. Nature communications 10 (1) (2019)
Maria Louise Leth, Morten Ejby Hansen, Eva Madland, Yoshihito Kitaoku, Dirk Jan Slotboom, Albert Guskov, Finn Lillelund Aachmann, Maher Abou Hachem
Molecular insight into a new low-affinity xylan binding module from the xylanolytic gut symbiont Roseburia intestinalis. The FEBS journal 287 (10) (2019)
Valentina Arkhipova, Gianluca Trinco, Thijs W Ettema, Sonja Jensen, Dirk Jan Slotboom, Albert Guskov
Binding and transport of D-aspartate by the glutamate transporter homolog GltTk. eLife 8 (2019)
Joana A Santos, Stephan Rempel, Sandra Tm Mous, Cristiane T Pereira, Josy Ter Beek, Jan-Willem de Gier, Albert Guskov, Dirk Jan Slotboom
Functional and structural characterization of an ECF-type ABC transporter for vitamin B12. eLife 7 (2018)
Alisa A Garaeva, Gert T Oostergetel, Cornelius Gati, Albert Guskov, Cristina Paulino, Dirk Jan Slotboom
Cryo-EM structure of the human neutral amino acid transporter ASCT2. Nature structural & molecular biology 25 (6) (2018)
Stephan Rempel, E Colucci, Jan-Willem de Gier, Albert Guskov, Dirk Jan Slotboom
Cysteine-mediated decyanation of vitamin B12 by the predicted membrane transporter BtuM. Nature communications 9 (1) (2018)
Valentina Arkhipova, Albert Guskov, Dirk Jan Slotboom
Analysis of the quality of crystallographic data and the limitations of structural models. The Journal of general physiology 149 (12) (2017)
Joris M H Goudsmits, Dirk Jan Slotboom, Antoine M van Oijen
Single-molecule visualization of conformational changes and substrate transport in the vitamin B12 ABC importer BtuCD-F. Nature communications 8 (1) (2017)
Michael Jaehme, Rajkumar Singh, Alisa A Garaeva, Ria H Duurkens, Dirk Jan Slotboom
PnuT uses a facilitated diffusion mechanism for thiamine uptake. The Journal of general physiology 150 (1) (2017)