Massimiliano Bonomi (M Bonomi)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 21

Top Venues

PLoS computational biology

Viruses

Nature communications

Journal of chemical theory and computation

CNRS Délégation Ile-de-France Ouest et Nord

Eidgenössische Technische Hochschule Zürich (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

CNRS Délégation Ile-de-France Ouest et Nord Oct 01 2018

France

Charge ́ de recherche de classe normal

University of Cambridge Sep 01 2013 - Sep 30 2018

United Kingdom

Postdoc

University of Washington Mar 01 2014 - Mar 01 2016

United States

Consultant

University of California San Francisco Sep 01 2010 - Jul 31 2013

United States

Postdoc

Education History

Eidgenössische Technische Hochschule Zürich

Switzerland

PHD :: Chemistry and Applied Biosciences

University of Milan

Italy

MSC :: Physics

Publications

F P Panei, Paraskevi Gkeka, Massimiliano Bonomi
Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN. Nature communications 15 (1) (2024)
Samuel E Hoff, F Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference. PLoS computational biology 20 (7) (2024)
F P Panei, Paraskevi Gkeka, Massimiliano Bonomi
Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN. Nature communications 15 (1) (2024)
Samuel E Hoff, F Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference. PLoS computational biology 20 (7) (2024)
Samuel E Hoff, F Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference. PLoS computational biology 20 (7) (2024)
Samuel E Hoff, F Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi
Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference. PLoS computational biology 20 (7) (2024)
F P Panei, Paraskevi Gkeka, Massimiliano Bonomi
Identifying small-molecules binding sites in RNA conformational ensembles with SHAMAN. Nature communications 15 (1) (2024)
Sarah Temmam, Xavier Montagutelli, Cécile Herate, Flora Donati, Béatrice Regnault, Mikael Attia, Eduard Baquero Salazar, Delphine Chretien, Laurine Conquet, Grégory Jouvion, Juliana Pipoli Da Fonseca, Thomas Cokelaer, Faustine Amara, Francis Relouzat, Thibaut Naninck, Julien Lemaitre, Nathalie Derreudre-Bosquet, Quentin Pascal, Massimiliano Bonomi, Thomas Bigot, Sandie Munier, Felix A Rey, Roger Le Grand, Sylvie van der Werf, Marc Eloit
SARS-CoV-2-related bat virus behavior in human-relevant models sheds light on the origin of COVID-19. EMBO reports (2023)
Rajeswari Appadurai, Jaya Krishna Koneru, Massimiliano Bonomi, Paul Robustelli, Anand Srivastava
Clustering Heterogeneous Conformational Ensembles of Intrinsically Disordered Proteins with t-Distributed Stochastic Neighbor Embedding. Journal of chemical theory and computation (2023)
Z Faidon Brotzakis, Thomas Löhr, Steven D Truong, Samuel Hoff, Massimiliano Bonomi, Christopher M Dobson
Determination of the Structure and Dynamics of the Fuzzy Coat of an Amyloid Fibril of IAPP Using Cryo-Electron Microscopy. Biochemistry (2023)
Julia Kende, Massimiliano Bonomi, Sarah Temmam, Béatrice Regnault, Philippe Pérot, Marc Eloit, Thomas Bigot
Virus Pop-Expanding Viral Databases by Protein Sequence Simulation. Viruses 15 (6) (2023)
Julia Kende, Massimiliano Bonomi, Sarah Temmam, Béatrice Regnault, Philippe Pérot, Marc Eloit, Thomas Bigot
Virus Pop-Expanding Viral Databases by Protein Sequence Simulation. Viruses 15 (6) (2023)
Julia Kende, Massimiliano Bonomi, Sarah Temmam, Béatrice Regnault, Philippe Pérot, Marc Eloit, Thomas Bigot
Virus Pop-Expanding Viral Databases by Protein Sequence Simulation. Viruses 15 (6) (2023)
Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero, Sandie Munier, Massimiliano Bonomi, Béatrice Regnault, Bounsavane Douangboubpha, Yasaman Karami, Delphine Chrétien, Daosavanh Sanamxay, Vilakhan Xayaphet, Phetphoumin Paphaphanh, Vincent Lacoste, Somphavanh Somlor, Khaithong Lakeomany, Nothasin Phommavanh, Philippe Pérot, Océane Dehan, Faustine Amara, Flora Donati, Thomas Bigot, Michael Nilges, Felix A Rey, Sylvie van der Werf, Paul T Brey, Marc Eloit
Bat coronaviruses related to SARS-CoV-2 and infectious for human cells. Nature 604 (7905) (2022)
F P Panei, Rachel Torchet, Hervé Ménager, Paraskevi Gkeka, Massimiliano Bonomi
HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design. Bioinformatics (Oxford, England) 38 (17) (2022)
Avner Schlessinger, Massimiliano Bonomi
Exploring the conformational diversity of proteins. eLife 11 (2022)
Rachel-Ann A Garibsingh, Elias Ndaru, Alisa A Garaeva, Yueyue Shi, Laura Zielewicz, Paul Zakrepine, Massimiliano Bonomi, Dirk Jan Slotboom, Cristina Paulino, Christof T Grewer, Avner Schlessinger
Rational design of ASCT2 inhibitors using an integrated experimental-computational approach. Proceedings of the National Academy of Sciences of the United States of America 118 (37) (2021)
Mariagrazia Fortino, Concetta Cozza, Massimiliano Bonomi, Adriana Pietropaolo
Multi-replica biased sampling for photoswitchable π-conjugated polymers. The Journal of chemical physics 154 (17) (2021)
Brian K Shoichet, Kresten Lindorff-Larsen, Massimiliano Bonomi
What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data? Journal of chemical information and modeling 60 (5) (2020)
Gabriella T Heller, Francesco Antonio Aprile, Thomas C T Michaels, Ryan Limbocker, Michele Perni, Francesco Simone Ruggeri, Benedetta Mannini, Thomas Löhr, Massimiliano Bonomi, Carlo Camilloni, Alfonso De Simone, Isabella C Felli, Roberta Pierattelli, Tuomas P J Knowles, Christopher M Dobson, Christopher M Dobson
Small-molecule sequestration of amyloid-β as a drug discovery strategy for Alzheimer's disease. Science advances 6 (45) (2020)
Concetta Cozza, Massimiliano Bonomi, Adriana Pietropaolo
A Versatile Computational Strategy To Characterize the Free-Energy Landscape of Excited States in Oligofluorenes. Journal of chemical theory and computation 14 (11) (2018)

Massimiliano Bonomi.css-eqlu8i{font-size:small;padding-left:4px;} (M Bonomi)

Publication Activity (10 Years)

Top Topics

Top Venues

Massimiliano Bonomi (M Bonomi)