Dmitri V Filippov (D V Filippov)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 59

Top Topics

Molecular Docking

Dna Damage Response

Top Venues

Organic letters

Chembiochem : a European journal of chemical biology

Chemistry (Weinheim an der Bergstrasse, Germany)

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Sander B Engelsma, Aurelio Pio Nardozza, Pieter de Saint Aulaire, Herman S Overkleeft, Gijsbert A van der Marel, Andreas G Ladurner, Dmitri V Filippov
Synthesis and Macrodomain Binding of Gln-carba-ADPr-peptide. Chembiochem : a European journal of chemical biology 25 (8) (2024)
Sander B Engelsma, Aurelio Pio Nardozza, Pieter de Saint Aulaire, Herman S Overkleeft, Gijsbert A van der Marel, Andreas G Ladurner, Dmitri V Filippov
Synthesis and Macrodomain Binding of Gln-carba-ADPr-peptide. Chembiochem : a European journal of chemical biology 25 (8) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters (2024)
Koen J Rijpkema, Marion Schuller, Miriam S van der Veer, Sjoerd Rieken, Diego L R Chang, Pascal Balić, Alex Todorov, Hugo Minnee, Sven Wijngaarden, Isaac A Matos, Nicolas C Hoch, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Synthesis of Structural ADP-Ribose Analogues as Inhibitors for SARS-CoV-2 Macrodomain 1. Organic letters 26 (27) (2024)
Sander B Engelsma, Aurelio Pio Nardozza, Pieter de Saint Aulaire, Herman S Overkleeft, Gijsbert A van der Marel, Andreas G Ladurner, Dmitri V Filippov
Synthesis and Macrodomain Binding of Gln-carba-ADPr-peptide. Chembiochem : a European journal of chemical biology (2024)
Ward Doelman, N A M Ligthart, M A T van de Plassche, Mark A R de Geus, L Reinalda, Marjolein M E Isendoorn, Dmitri V Filippov, S I van Kasteren
Synthesis of Peptides Containing a Combination of Free and 2-trans-Cyclooctene Carbamate Protected Lysine Residues. Chembiochem : a European journal of chemical biology 25 (4) (2024)
Koen J Rijpkema, Marion Schuller, Miriam S van der Veer, Sjoerd Rieken, Diego L R Chang, Pascal Balić, Alex Todorov, Hugo Minnee, Sven Wijngaarden, Isaac A Matos, Nicolas C Hoch, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Synthesis of Structural ADP-Ribose Analogues as Inhibitors for SARS-CoV-2 Macrodomain 1. Organic letters 26 (27) (2024)
Ward Doelman, N A M Ligthart, M A T van de Plassche, Mark A R de Geus, L Reinalda, Marjolein M E Isendoorn, Dmitri V Filippov, S I van Kasteren
Synthesis of Peptides Containing a Combination of Free and 2-trans-Cyclooctene Carbamate Protected Lysine Residues. Chembiochem : a European journal of chemical biology 25 (4) (2024)
Zhengrui Zhang, Jiaqi Fu, Johannes Gregor Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das
Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nature communications 15 (1) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters 26 (3) (2024)
Wouter A Remmerswaal, Tjeerd de Jong, Koen N A van de Vrande, Rick Louwersheimer, Thomas Verwaal, Dmitri V Filippov, Jeroen D C Codée, Thomas Hansen
Backside versus Frontside S N 2 Reactions of Alkyl Triflates and Alcohols. Chemistry (Weinheim an der Bergstrasse, Germany) 30 (25) (2024)
Koen J Rijpkema, Marion Schuller, Miriam S van der Veer, Sjoerd Rieken, Diego L R Chang, Pascal Balić, Alex Todorov, Hugo Minnee, Sven Wijngaarden, Isaac A Matos, Nicolas C Hoch, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Synthesis of Structural ADP-Ribose Analogues as Inhibitors for SARS-CoV-2 Macrodomain 1. Organic letters (2024)
Zhengrui Zhang, Jiaqi Fu, Johannes Gregor Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das
Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nature communications 15 (1) (2024)
Wouter A Remmerswaal, Tjeerd de Jong, Koen N A van de Vrande, Rick Louwersheimer, Thomas Verwaal, Dmitri V Filippov, Jeroen D C Codée, Thomas Hansen
Backside versus Frontside S N 2 Reactions of Alkyl Triflates and Alcohols. Chemistry (Weinheim an der Bergstrasse, Germany) (2024)
Koen J Rijpkema, Marion Schuller, Miriam S van der Veer, Sjoerd Rieken, Diego L R Chang, Pascal Balić, Alex Todorov, Hugo Minnee, Sven Wijngaarden, Isaac A Matos, Nicolas C Hoch, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Synthesis of Structural ADP-Ribose Analogues as Inhibitors for SARS-CoV-2 Macrodomain 1. Organic letters 26 (27) (2024)
Dylan P Noone, Marjolein M E Isendoorn, Sebastiaan M W R Hamers, Mariska E Keizer, Jip Wulffelé, Tijn T van der Velden, Douwe J Dijkstra, Leendert Adrianus Trouw, Dmitri V Filippov, Thomas H Sharp
Structural basis for surface activation of the classical complement cascade by the short pentraxin C-reactive protein. Proceedings of the National Academy of Sciences of the United States of America 121 (37) (2024)
Ward Doelman, N A M Ligthart, M A T van de Plassche, Mark A R de Geus, L Reinalda, Marjolein M E Isendoorn, Dmitri V Filippov, S I van Kasteren
Synthesis of Peptides Containing a Combination of Free and 2-trans-Cyclooctene Carbamate Protected Lysine Residues. Chembiochem : a European journal of chemical biology 25 (4) (2024)
Zhengrui Zhang, Jiaqi Fu, Johannes Gregor Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das
Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nature communications 15 (1) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters 26 (3) (2024)
Koen J Rijpkema, Marion Schuller, Miriam S van der Veer, Sjoerd Rieken, Diego L R Chang, Pascal Balić, Alex Todorov, Hugo Minnee, Sven Wijngaarden, Isaac A Matos, Nicolas C Hoch, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Synthesis of Structural ADP-Ribose Analogues as Inhibitors for SARS-CoV-2 Macrodomain 1. Organic letters 26 (27) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters 26 (3) (2024)
Zhengrui Zhang, Jiaqi Fu, Johannes Gregor Matthias Rack, Chuang Li, Jim Voorneveld, Dmitri V Filippov, Ivan Ahel, Zhao-Qing Luo, Chittaranjan Das
Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nature communications 15 (1) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters 26 (3) (2024)
Jianyun Guo, Pascal Balić, Vladimir S Borodkin, Dmitri V Filippov, Jeroen D C Codée
Synthesis of Unsymmetrical Difluoromethylene Bisphosphonates. Organic letters 26 (3) (2024)
Hugo Minnee, Johannes G M Rack, Gijsbert A van der Marel, Herman S Overkleeft, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Solid-Phase Synthesis and Biological Evaluation of Peptides ADP-Ribosylated at Histidine. Angewandte Chemie (Weinheim an der Bergstrasse, Germany) 136 (4) (2023)
Kyuto Tashiro, Sven Wijngaarden, Jugal Mohapatra, Johannes G M Rack, Ivan Ahel, Dmitri V Filippov, Glen Liszczak
Chemoenzymatic and Synthetic Approaches To Investigate Aspartate- and Glutamate-ADP-Ribosylation. Journal of the American Chemical Society (2023)
Hugo Minnee, Hayley Chung, Johannes Gregor Matthias Rack, Gijsbert A van der Marel, Herman S Overkleeft, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Four of a Kind: A Complete Collection of ADP-Ribosylated Histidine Isosteres Using Cu(I)- and Ru(II)-Catalyzed Click Chemistry. The Journal of organic chemistry (2023)
Hugo Minnee, Johannes G M Rack, Gijsbert A van der Marel, Herman S Overkleeft, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Solid-Phase Synthesis and Biological Evaluation of Peptides ADP-Ribosylated at Histidine. Angewandte Chemie (Weinheim an der Bergstrasse, Germany) 136 (4) (2023)
Ward Doelman, N A M Ligthart, M A T van de Plassche, Mark A R de Geus, L Reinalda, Marjolein M E Isendoorn, Dmitri V Filippov, S I van Kasteren
Synthesis of Peptides Containing a Combination of Free and 2-trans-Cyclooctene Carbamate Protected Lysine Residues. Chembiochem : a European journal of chemical biology (2023)
Sven Wijngaarden, Chunsong Yang, Carlos Vela-Rodríguez, Lari Lehtiö, Herman S Overkleeft, Bryce M Paschal, Dmitri V Filippov
Synthetic Dual Cysteine-ADP Ribosylated Peptides from the Androgen Receptor are Recognized by the DTX3L/PARP9 Complex. ACS chemical biology (2023)
Jerre M Madern, Jim Voorneveld, Johannes G M Rack, Ivan Ahel, Gijsbert A van der Marel, Jeroen D C Codée, Dmitri V Filippov
4-Thioribose Analogues of Adenosine Diphosphate Ribose (ADPr) Peptides. Organic letters (2023)
Hugo Minnee, Johannes G M Rack, Gijsbert A van der Marel, Herman S Overkleeft, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Solid-Phase Synthesis and Biological Evaluation of Peptides ADP-Ribosylated at Histidine. Angewandte Chemie (Weinheim an der Bergstrasse, Germany) 136 (4) (2023)
Koen N A van de Vrande, Dmitri V Filippov, Jeroen D C Codée
Formation of Glycosyl Trichloroacetamides from Trichloroacetimidate Donors Occurs through an Intermolecular Aglycon Transfer Reaction. Organic letters (2023)
Nina Đukić, Øyvind Strømland, Jonas Damgaard Elsborg, Deeksha Munnur, Kang Zhu, Marion Schuller, Chatrin Chatrin, Pulak Kar, Lena Duma, Osamu Suyari, Johannes Gregor Matthias Rack, Domagoj Baretić, Dorian Richard Kenneth Crudgington, Joséphine Groslambert, Gerissa Fowler, Sven Wijngaarden, Evgeniia A Prokhorova, Jan Rehwinkel, Herwig Schüler, Dmitri V Filippov, Sumana Sanyal, Dragana Ahel, Michael Lund Nielsen, Rebecca Smith, Ivan Ahel
PARP14 is a PARP with both ADP-ribosyl transferase and hydrolase activities. Science advances 9 (37) (2023)
Alex van der Ham, Xue Liu, Dario Calvani, Adéla Melcrová, Melania Kozdra, Francesco Buda, Herman S Overkleeft, Wouter H Roos, Dmitri V Filippov, Gregory F Schneider
Freestanding non-covalent thin films of the propeller-shaped polycyclic aromatic hydrocarbon decacyclene. Nature communications 13 (1) (2022)
Hugo Minnee, Johannes G M Rack, Gijsbert A van der Marel, Herman S Overkleeft, Jeroen D C Codée, Ivan Ahel, Dmitri V Filippov
Mimetics of ADP-Ribosylated Histidine through Copper(I)-Catalyzed Click Chemistry. Organic letters 24 (21) (2022)
Jim Voorneveld, Johannes Gregor Matthias Rack, Luke van Gijlswijk, Nico J Meeuwenoord, Qiang Liu, Herman S Overkleeft, Gijsbert A van der Marel, Ivan Ahel, Dmitri V Filippov
Molecular Tools for the Study of ADP-Ribosylation: A Unified and Versatile Method to Synthesise Native Mono-ADP-Ribosylated Peptides. Chemistry (Weinheim an der Bergstrasse, Germany) 27 (41) (2021)
Qiang Liu, Gunnar Knobloch, Jim Voorneveld, Nico J Meeuwenoord, Herman S Overkleeft, Gijsbert A van der Marel, Andreas G Ladurner, Dmitri V Filippov
Chemical synthesis of linear ADP-ribose oligomers up to pentamer and their binding to the oncogenic helicase ALC1. Chemical science 12 (37) (2021)
Johannes Gregor Matthias Rack, Qiang Liu, Valentina Zorzini, Jim Voorneveld, Antonio Ariza, Kourosh Honarmand Ebrahimi, Julia M Reber, Sarah C Krassnig, Dragana Ahel, Gijsbert A van der Marel, Aswin Mangerich, James S O McCullagh, Dmitri V Filippov, Ivan Ahel
Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal. Nature communications 12 (1) (2021)
Thomas Hansen, Pascal Vermeeren, Ryoji Yoshisada, Dmitri V Filippov, Gijsbert A van der Marel, Jeroen D C Codée, Trevor A Hamlin
How Lewis Acids Catalyze Ring-Openings of Cyclohexene Oxide. The Journal of organic chemistry 86 (4) (2021)
Niels R M Reintjens, Elena Tondini, Christopher Vis, Toroa McGlinn, Nico J Meeuwenoord, Tim P Hogervorst, Herman S Overkleeft, Dmitri V Filippov, Gijsbert A van der Marel, Ferry Ossendorp, Jeroen D C Codée
Multivalent, Stabilized Mannose-6-Phosphates for the Targeted Delivery of Toll-Like Receptor Ligands and Peptide Antigens. Chembiochem : a European journal of chemical biology 22 (2) (2020)
Jeanine van Mechelen, Jim Voorneveld, Hermen S Overkleeft, Dmitri V Filippov, Gijsbert A van der Marel, Jeroen D C Codée
Synthesis of orthogonally protected and functionalized bacillosamines. Organic & biomolecular chemistry 18 (15) (2020)
Tim P Hogervorst, R J Eveline Li, Laura Marino, Sven C M Bruijns, Nico J Meeuwenoord, Dmitri V Filippov, Herman S Overkleeft, Gijsbert A van der Marel, Sandra J van Vliet, Yvette van Kooyk, Jeroen D C Codée
C-Mannosyl Lysine for Solid Phase Assembly of Mannosylated Peptide Conjugate Cancer Vaccines. ACS chemical biology 15 (3) (2020)
Mark A R de Geus, Elmer Maurits, Alexi J C Sarris, Thomas Hansen, Max S Kloet, Kiki Kamphorst, Wolter Ten Hoeve, Marc S Robillard, Andrea Pannwitz, Sylvestre A Bonnet, Jeroen D C Codée, Dmitri V Filippov, Herman S Overkleeft, Sander Izaäk van Kasteren
Fluorogenic Bifunctional trans-Cyclooctenes as Efficient Tools for Investigating Click-to-Release Kinetics. Chemistry (Weinheim an der Bergstrasse, Germany) 26 (44) (2020)
Jim Voorneveld, Bogdan I Florea, Thomas Bakkum, Rafal J Mendowicz, Miriam S van der Veer, Berend Gagestein, Sander I van Kasteren, Mario van der Stelt, Herman S Overkleeft, Dmitri V Filippov
Olaparib-Based Photoaffinity Probes for PARP-1 Detection in Living Cells. Chembiochem : a European journal of chemical biology 21 (17) (2020)
Niels R M Reintjens, Elena Tondini, Ana R de Jong, Nico J Meeuwenoord, Fabrizio Chiodo, Evert Peterse, Herman S Overkleeft, Dmitri V Filippov, Gijsbert A van der Marel, Ferry Ossendorp, Jeroen D C Codée
Self-Adjuvanting Cancer Vaccines from Conjugation-Ready Lipid A Analogues and Synthetic Long Peptides. Journal of medicinal chemistry 63 (20) (2020)
Qiang Liu, Gijsbert A van der Marel, Dmitri V Filippov
Chemical ADP-ribosylation: mono-ADPr-peptides and oligo-ADP-ribose. Organic & biomolecular chemistry 17 (22) (2020)
Thomas Hansen, Tim P Ofman, Joey G C Vlaming, Ivan A Gagarinov, Jessey van Beek, Tessa A Goté, Jacoba M Tichem, Gijs Ruijgrok, Herman S Overkleeft, Dmitri V Filippov, Gijsbert A van der Marel, Jeroen D C Codée
Reactivity-Stereoselectivity Mapping for the Assembly of Mycobacterium marinum Lipooligosaccharides. Angewandte Chemie (International ed. in English) 60 (2) (2020)
Thomas C van den Ende, Jeroen M M Heuts, Geoffroy P P Gential, Marten Visser, Michel J van de Graaff, Nataschja I Ho, Wim Jiskoot, A Rob P M Valentijn, Nico J Meeuwenoord, Herman S Overkleeft, Jeroen D C Codée, Sjoerd H van der Burg, Els M E Verdegaal, Gijsbert A van der Marel, Ferry Ossendorp, Dmitri V Filippov
Simplified Monopalmitoyl Toll-like Receptor 2 Ligand Mini-UPam for Self-Adjuvanting Neoantigen-Based Synthetic Cancer Vaccines. Chembiochem : a European journal of chemical biology 22 (7) (2020)
Gregory F Schneider, Thomas Hansen, Gerrit Lodder, Jeroen D C Codée, Trevor A Hamlin, Dmitri V Filippov
Computational and NMR Studies on the Complexation of Lithium Ion to 8-Crown-4. Chemphyschem : a European journal of chemical physics and physical chemistry 20 (16) (2019)
Stefan van der Vorm, Thomas Hansen, Erwin R van Rijssel, Rolf Dekkers, Jerre M Madern, Herman S Overkleeft, Dmitri V Filippov, Gijsbert A van der Marel, Jeroen D C Codée
Furanosyl Oxocarbenium Ion Conformational Energy Landscape Maps as a Tool to Study the Glycosylation Stereoselectivity of 2-Azidofuranoses, 2-Fluorofuranoses and Methyl Furanosyl Uronates. Chemistry (Weinheim an der Bergstrasse, Germany) 25 (29) (2019)
Jerre M Madern, Thomas Hansen, Erwin R van Rijssel, Hans A V Kistemaker, Stefan van der Vorm, Herman S Overkleeft, Gijsbert A van der Marel, Dmitri V Filippov, Jeroen D C Codée
Synthesis, Reactivity, and Stereoselectivity of 4-Thiofuranosides. The Journal of organic chemistry 84 (3) (2019)
E Zurlo, I Gorroño Bikandi, N J Meeuwenoord, Dmitri V Filippov, Martina Huber
Tracking amyloid oligomerization with monomer resolution using a 13-amino acid peptide with a backbone-fixed spin label. Physical chemistry chemical physics : PCCP 21 (45) (2019)
Gijs G Zom, Marian M J H P Willems, Nico J Meeuwenoord, Niels R M Reintjens, Elena Tondini, Selina Khan, Herman S Overkleeft, Gijsbert A van der Marel, Jeroen D C Codée, Ferry Ossendorp, Dmitri V Filippov
Dual Synthetic Peptide Conjugate Vaccine Simultaneously Triggers TLR2 and NOD2 and Activates Human Dendritic Cells. Bioconjugate chemistry 30 (4) (2019)
Qiang Liu, Hans A V Kistemaker, Sagar Bhogaraju, Ivan Dikic, Herman S Overkleeft, Gijsbert A van der Marel, Huib Ovaa, Gerbrand J van der Heden van Noort, Dmitri V Filippov
A General Approach Towards Triazole-Linked Adenosine Diphosphate Ribosylated Peptides and Proteins. Angewandte Chemie (International ed. in English) 57 (6) (2018)
Alexi J C Sarris, Thomas Hansen, Mark A R de Geus, Elmer Maurits, Ward Doelman, Herman S Overkleeft, Jeroen D C Codée, Dmitri V Filippov, Sander I van Kasteren
Fast and pH-Independent Elimination of trans-Cyclooctene by Using Aminoethyl-Functionalized Tetrazines. Chemistry (Weinheim an der Bergstrasse, Germany) 24 (68) (2018)
Jim Voorneveld, Johannes G M Rack, Ivan Ahel, Herman S Overkleeft, Gijsbert A van der Marel, Dmitri V Filippov
Synthetic α- and β-Ser-ADP-ribosylated Peptides Reveal α-Ser-ADPr as the Native Epimer. Organic letters 20 (13) (2018)
Sander B Engelsma, Nico J Meeuwenoord, Hermen S Overkleeft, Gijsbert A van der Marel, Dmitri V Filippov
Combined Phosphoramidite-Phosphodiester Reagents for the Synthesis of Methylene Bisphosphonates. Angewandte Chemie (International ed. in English) 56 (11) (2017)
Hans A V Kistemaker, Aurelio Pio Nardozza, Herman S Overkleeft, Gijs A van der Marel, Andreas G Ladurner, Dmitri V Filippov
Synthesis and Macrodomain Binding of Mono-ADP-Ribosylated Peptides. Angewandte Chemie (International ed. in English) 55 (36) (2016)