Jeffrey Ross-Ibarra

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 34

Top Venues

University of California Davis

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Davis Jul 01 2019

United States

Professor :: Evolution and Ecology

University of California Davis Jan 02 2009 - Jun 30 2019

United States

Asst/Assoc/Full Professor :: Plant Sciences

Publications

Benjamin Berube, Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn, Armin Scheben, Daniel Grimanelli, Adam C Siepel, Jeffrey Ross-Ibarra, Jerry Kermicle, Robert A Martienssen
Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature (2024)
Benjamin Berube, Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn, Armin Scheben, Daniel Grimanelli, Adam C Siepel, Jeffrey Ross-Ibarra, Jerry Kermicle, Robert A Martienssen
Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature (2024)
Benjamin Berube, Evan Ernst, Jonathan Cahn, Benjamin Roche, Cristiane de Santis Alves, Jason Lynn, Armin Scheben, Daniel Grimanelli, Adam C Siepel, Jeffrey Ross-Ibarra, Jerry Kermicle, Robert A Martienssen
Teosinte Pollen Drive guides maize diversification and domestication by RNAi. Nature (2024)
Anna M O'Brien, Ruairidh J H Sawers, Jaime Gasca-Pineda, Ivan R Baxter, Luis E Eguiarte, Jeffrey Ross-Ibarra, Sharon Y Strauss
Teosinte populations exhibit weak local adaptation to their rhizosphere biota despite strong effects of biota source on teosinte fitness and traits. Evolution; international journal of organic evolution (2024)
Ning Yang, Yuebin Wang, Xiangguo Liu, Minliang Jin, Miguel Vallebueno-Estrada, Erin Calfee, Lu Chen, Brian P Dilkes, Songtao Gui, Xingming Fan, Thomas K Harper, Douglas J Kennett, Wenqiang Li, Yanli Lu, Junqiang Ding, Ziqi Chen, Jingyun Luo, Sowmya Mambakkam, Mitra Menon, Samantha J Snodgrass, Carl Veller, Shenshen Wu, Siying Wu, Lin Zhuo, Yingjie Xiao, Xiaohong Yang, Michelle C Stitzer, Daniel Runcie, Jianbing Yan, Jeffrey Ross-Ibarra
Two teosintes made modern maize. Science (New York, N.Y.) 382 (6674) (2023)
Shichao Sun, Baobao Wang, Changyu Li, Gen Xu, Jinliang Yang, Matthew B Hufford, Jeffrey Ross-Ibarra, Haiyang Wang, Li Wang
Unraveling prevalence and effects of deleterious mutations in maize elite lines across decades of modern breeding. Molecular biology and evolution (2023)
Sherry Flint-Garcia, Mitchell J Feldmann, Hannes Dempewolf, Peter L Morrell, Jeffrey Ross-Ibarra
Diamonds in the not-so-rough: Wild relative diversity hidden in crop genomes. PLoS biology 21 (7) (2023)
Haixiao Hu, Taylor Crow, Saghi Nojoomi, Aimee J Schulz, Juan M Estévez-Palmas, Matthew B Hufford, Sherry Flint-Garcia, Ruairidh Sawers, Rubén Rellán-Álvarez, Jeffrey Ross-Ibarra, Daniel E Runcie
Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize. Molecular biology and evolution 39 (11) (2022)
Chunhui Li, Honghui Guan, Xin Jing, Yaoyao Li, Baobao Wang, Yongxiang Li, Xuyang Liu, Dengfeng Zhang, Cheng Liu, Xiaoqing Xie, Haiyan Zhao, Yanbo Wang, Jingbao Liu, Panpan Zhang, Guanghui Hu, Guoliang Li, Suiyan Li, Dequan Sun, Xiaoming Wang, Yunsu Shi, Yanchun Song, Chengzhi Jiao, Jeffrey Ross-Ibarra, Yu Li, Tianyu Wang, Hai-Yang Wang
Genomic insights into historical improvement of heterotic groups during modern hybrid maize breeding. Nature plants 8 (7) (2022)
Robert Horvath, Mitra Menon, Michelle Stitzer, Jeffrey Ross-Ibarra
Controlling for Variable Transposition Rate with an Age-Adjusted Site Frequency Spectrum. Genome biology and evolution 14 (2) (2022)
Allison C Barnes, Fausto Rodríguez-Zapata, Karla Azucena Blöcher-Juárez, Daniel J Gates, Garrett M Janzen, Andi Kur, Li Wang, Sarah E Jensen, Juan M Estévez-Palmas, Taylor M Crow, Heli S Kavi, Hannah D Pil, Ruthie L Stokes, Kevan T Knizner, María Rocío Aguilar-Rangel, Edgar Demesa-Arévalo, Tara Skopelitis, Sergio Pérez-Limón, Whitney L Stutts, Peter M Thompson, Yu-Chun Chiu, David P Jackson, David C Muddiman, Oliver Fiehn, Daniel Runcie, Edward S Buckler, Jeffrey Ross-Ibarra, Matthew B Hufford, Ruairidh J H Sawers, Rubén Rellán Álvarez
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of the United States of America 119 (27) (2022)
Asher I Hudson, Sarah G Odell, Pierre Dubreuil, Marie-Helene Tixier, Sebastien Praud, Daniel E Runcie, Jeffrey Ross-Ibarra
Analysis of genotype-by-environment interactions in a maize mapping population. G3 (Bethesda, Md.) 12 (3) (2022)
Lu Chen, Jingyun Luo, Minliang Jin, Ning Yang, Xiangguo Liu, Yong Peng, Wenqiang Li, Alyssa Phillips, Brenda Cameron, Julio S Bernal, Rubén Rellán Álvarez, Ruairidh J H Sawers, Qing Liu, Yuejia Yin, Xinnan Ye, Jiali Yan, Qinghua Zhang, Xiaoting Zhang, Shenshen Wu, Songtao Gui, Wenjie Wei, Yuebin Wang, Yun Luo, Chenglin Jiang, Min Deng, Min Jin, Liumei Jian, Yanhui Yu, Maolin Zhang, Xiaohong Yang, Matthew B Hufford, Alisdair Robert Fernie, Marilyn L Warburton, Jeffrey Ross-Ibarra, Jianbing Yan
Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nature genetics 54 (11) (2022)
Sergio Pérez-Limón, Meng Li, G Carolina Cintora-Martinez, María Rocío Aguilar-Rangel, M Nancy Salazar-Vidal, Eric Gerardo Gonzalez Segovia, Karla Azucena Blöcher-Juárez, Alejandro Guerrero-Zavala, Benjamin Barrales-Gamez, Jessica Carcaño-Macias, Denise E Costich, Jorge Nieto-Sotelo, Octavio Martínez de la Vega, June Simpson, Matthew B Hufford, Jeffrey Ross-Ibarra, Sherry A Flint-Garcia, Luis Diaz-Garcia, Rubén Rellán Álvarez, Ruairidh J H Sawers
A B73×Palomero Toluqueño mapping population reveals local adaptation in Mexican highland maize. G3 (Bethesda, Md.) 12 (3) (2022)
Azalea Guerra-García, Idalia C Rojas-Barrera, Jeffrey Ross-Ibarra, Roberto Papa, Daniel Piñero
The genomic signature of wild-to-crop introgression during the domestication of scarlet runner bean ( Phaseolus coccineus L.). Evolution letters 6 (4) (2022)
Sarah G Odell, Asher I Hudson, Sebastien Praud, Pierre Dubreuil, Marie-Hélène Tixier, Jeffrey Ross-Ibarra, Daniel E Runcie
Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci. G3 (Bethesda, Md.) 12 (3) (2022)
Luis Fernando Samayoa, Bode A Olukolu, Chin Jian Yang, Qiuyue Chen, Markus G Stetter, Alessandra M York, Jose de Jesus Sanchez-Gonzalez, Jeffrey C Glaubitz, Peter J Bradbury, Maria Cinta Romay, Qi Sun, Jinliang Yang, Jeffrey Ross-Ibarra, Edward S Buckler, John F Doebley, James B Holland
Domestication reshaped the genetic basis of inbreeding depression in a maize landrace compared to its wild relative, teosinte. PLoS genetics 17 (12) (2021)
Matthew B Hufford, Arun S Seetharam, Margaret R Woodhouse, Kapeel M Chougule, Shujun Ou, Jianing Liu, William A Ricci, Tingting Guo, Andrew Olson, Yinjie Qiu, Rafael Della Coletta, Silas B Tittes, Asher I Hudson, Alexandre P Marand, Sharon Wei, Zhenyuan Lu, Bo Wang, Marcela Karey Tello-Ruiz, Rebecca D Piri, Na Wang, Dong Won Kim, Yibing Zeng, Christine H O'Connor, Xianran Li, Amanda M Gilbert, Erin L Baggs, Ksenia V Krasileva, John L Portwood, Ethalinda K S Cannon, Carson M Andorf, Nancy Manchanda, Samantha J Snodgrass, David E Hufnagel, Qiuhan Jiang, Sarah Pedersen, Michael L Syring, David A Kudrna, Victor Llaca, Kevin Fengler, Robert J Schmitz, Jeffrey Ross-Ibarra, Jianming Yu, Jonathan I Gent, Candice N Hirsch, Doreen H Ware, R Kelly Dawe
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.) 373 (6555) (2021)
Michelle C Stitzer, Sarah N Anderson, Springer M Nathan, Jeffrey Ross-Ibarra
The genomic ecosystem of transposable elements in maize. PLoS genetics 17 (10) (2021)
Erin Calfee, Daniel Gates, Anne Lorant, M Taylor Perkins, Graham M Coop, Jeffrey Ross-Ibarra
Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. PLoS genetics 17 (10) (2021)
Roberto Lozano, Elodie Gazave, Jhonathan P R Dos Santos, Markus G Stetter, Ravi Valluru, Nonoy Bandillo, Samuel B Fernandes, Patrick J Brown, Nadia Shakoor, Todd C Mockler, Elizabeth A Cooper, M Taylor Perkins, Edward S Buckler, Jeffrey Ross-Ibarra, Michael A Gore
Comparative evolutionary genetics of deleterious load in sorghum and maize. Nature plants 7 (1) (2021)
Raul Torres, Markus G Stetter, Ryan D Hernandez, Jeffrey Ross-Ibarra
The Temporal Dynamics of Background Selection in Nonequilibrium Populations. Genetics 214 (4) (2020)
Leo Zeitler, Jeffrey Ross-Ibarra, Markus G Stetter
Selective Loss of Diversity in Doubled-Haploid Lines from European Maize Landraces. G3 (Bethesda, Md.) 10 (7) (2020)
Gen Xu, Jing Lyu, Qing Li, Han Liu, Dafang Wang, Mei Zhang, Springer M Nathan, Jeffrey Ross-Ibarra, Jinliang Yang
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement. Nature communications 11 (1) (2020)
Baobao Wang, Zechuan Lin, Xin Li, Yongping Zhao, Binbin Zhao, Guangxia Wu, Xiaojing Ma, Hai Wang, Yurong Xie, Quanquan Li, Guangshu Song, Dexin Kong, Zhigang Zheng, Hongbin Wei, Rongxin Shen, Hong Wu, Cuixia Chen, Zhaodong Meng, Tianyu Wang, Yu Li, Xinhai Li, Yanhui Chen, Jinsheng Lai, Matthew B Hufford, Jeffrey Ross-Ibarra, Hang He, Hai-Yang Wang
Genome-wide selection and genetic improvement during modern maize breeding. Nature genetics 52 (6) (2020)
Qiuyue Chen, Luis Fernando Samayoa, Chin Jian Yang, Peter J Bradbury, Bode A Olukolu, Michael A Neumeyer, Maria Cinta Romay, Qi Sun, Anne Lorant, Edward S Buckler, Jeffrey Ross-Ibarra, James B Holland, John F Doebley
The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication. PLoS genetics 16 (5) (2020)
Wei Xue, Sarah N Anderson, Xufeng Wang, Liyan Yang, Peter A Crisp, Qing Li, Jaclyn M Noshay, Patrice S Albert, James A Birchler, Paul Bilinski, Michelle C Stitzer, Jeffrey Ross-Ibarra, Sherry A Flint-Garcia, Xuemei Chen, Springer M Nathan, John F Doebley
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics 213 (1) (2019)
Sarah N Anderson, Michelle C Stitzer, Alex B Brohammer, Peng Zhou, Jaclyn M Noshay, Christine H O'Connor, Cory D Hirsch, Jeffrey Ross-Ibarra, Candice N Hirsch, Springer M Nathan
Transposable elements contribute to dynamic genome content in maize. The Plant journal : for cell and molecular biology 100 (5) (2019)
Emily B Josephs, Jeremy J Berg, Jeffrey Ross-Ibarra, Graham M Coop
Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens. Genetics 211 (3) (2019)
Sarah N Anderson, Michelle C Stitzer, Peng Zhou, Jeffrey Ross-Ibarra, Cory D Hirsch, Springer M Nathan
Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.) 9 (11) (2019)
Markus G Stetter, Kevin R Thornton, Jeffrey Ross-Ibarra
Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima. PLoS genetics 14 (11) (2018)
Wenbin Mei, Markus G Stetter, Daniel J Gates, Michelle C Stitzer, Jeffrey Ross-Ibarra
Adaptation in plant genomes: Bigger is different. American journal of botany 105 (1) (2018)
Paul Bilinski, Patrice S Albert, Jeremy J Berg, James A Birchler, Mark N Grote, Anne Lorant, Juvenal Quezada, Kelly L Swarts, Jinliang Yang, Jeffrey Ross-Ibarra
Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. PLoS genetics 14 (5) (2018)
Dianne Velasco, Josh Hough, Mallikarjuna Aradhya, Jeffrey Ross-Ibarra
Evolutionary Genomics of Peach and Almond Domestication. G3 (Bethesda, Md.) 6 (12) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jeffrey Ross-Ibarra