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Fran Supek

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 27

Top Venues

BMC biology

Nature communications

Nature genetics

Science advances

Instituciò Catalana de Recerca i Estudis Avancats

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Instituciò Catalana de Recerca i Estudis Avancats Nov 1o 2018

Spain

ICREA Research Professor :: Group Leader at IRB Barcelona

Publications

Bruno Fito-Lopez, Marina Salvadores, Miguel-Martin Alvarez, Fran Supek
Prevalence, causes and impact of TP53-loss phenocopying events in human tumors. BMC biology 21 (1) (2023)
Bruno Fito-Lopez, Marina Salvadores, Miguel-Martin Alvarez, Fran Supek
Prevalence, causes and impact of TP53-loss phenocopying events in human tumors. BMC biology 21 (1) (2023)
Bruno Fito-Lopez, Marina Salvadores, Miguel-Martin Alvarez, Fran Supek
Prevalence, causes and impact of TP53-loss phenocopying events in human tumors. BMC biology 21 (1) (2023)
Bruno Fito-Lopez, Marina Salvadores, Miguel-Martin Alvarez, Fran Supek
Prevalence, causes and impact of TP53-loss phenocopying events in human tumors. BMC biology 21 (1) (2023)
Mischan Vali-Pour, Solip Park, Jose Espinosa-Carrasco, Daniel Ortiz-Martínez, Ben Lehner, Fran Supek
Author Correction: The impact of rare germline variants on human somatic mutation processes. Nature communications 14 (1) (2023)
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L Bruzos, Stefan C Dentro, Miguel G Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D Roberts, Sonia Zumalave, Paul A W Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A Wala, Keiran M Raine, Adam Butler, Sebastian M Waszak, Fábio C P Navarro, Steven E Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J Park, David C Wedge, Rameen Beroukhim, David Torrents, Jan O Korbel, Iñigo Martincorena, Rebecca C Fitzgerald, Peter Van Loo, Haig H Kazazian, Kathleen H Burns, null null, Peter J Campbell, Jose M C Tubio, null null
Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature genetics (2023)
Bruno Fito-Lopez, Marina Salvadores, Miguel-Martin Alvarez, Fran Supek
Prevalence, causes and impact of TP53-loss phenocopying events in human tumors. BMC biology 21 (1) (2023)
Mischan Vali-Pour, Ben Lehner, Fran Supek
The impact of rare germline variants on human somatic mutation processes. Nature communications 13 (1) (2022)
Aleksandra Karolak, Jurica Levatić, Fran Supek
A framework for mutational signature analysis based on DNA shape parameters. PloS one 17 (1) (2022)
Miguel Martín Álvarez, Josep Biayna, Fran Supek
TP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screening. Nature communications 13 (1) (2022)
David Mas-Ponte, Marcel McCullough, Fran Supek
Spectrum of DNA mismatch repair failures viewed through the lens of cancer genomics and implications for therapy. Clinical science (London, England : 1979) 136 (5) (2022)
Sami Belhadj, Aliya Khurram, Chaitanya Bandlamudi, Guillermo Palou-Márquez, Vignesh Ravichandran, Zoe Steinsnyder, Temima Wildman, Amanda Catchings, Yelena M Kemel, Semanti Mukherjee, Benjamin Fesko, Kanika S Arora, Miika Mehine, Sita Dandiker, Aalin Izhar, John H J Petrini, Susan M Domchek, Katherine L Nathanson, Jamie Brower, Fergus J Couch, Zsofia K Stadler, Mark E Robson, Michael F Walsh, Joseph Vijai, Michael F Berger, Fran Supek, Rachid Karam, Sabine Topka, Kenneth Offit
NBN pathogenic germline variants are associated with pan-cancer susceptibility and in vitro DNA damage response defects. Clinical cancer research : an official journal of the American Association for Cancer Research (2022)
Jurica Levatić, Marina Salvadores, Francisco Fuster-Tormo, Fran Supek
Mutational signatures are markers of drug sensitivity of cancer cells. Nature communications 13 (1) (2022)
Solip Park, Fran Supek, Ben Lehner
Higher order genetic interactions switch cancer genes from two-hit to one-hit drivers. Nature communications 12 (1) (2021)
Josep Biayna, Isabel Garcia-Cao, Miguel M Álvarez, Marina Salvadores, Jose Espinosa-Carrasco, Marcel McCullough, Fran Supek, Travis H Stracker
Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells. PLoS biology 19 (3) (2021)
Joshua S Madin, Daniel Aagren Nielsen, Maria Brbic, Ross Corkrey, David Danko, Kyle Edwards, Martin K M Engqvist, Noah Fierer, Jemma L Geoghegan, Michael R Gillings, Nikos C Kyrpides, Elena Litchman, Christopher E Mason, Lisa R Moore, Søren Laurentius Nielsen, Ian T Paulsen, Nathan D Price, T B K Reddy, Matthew A Richards, Eduardo P C Rocha, Thomas M Schmidt, Heba Shaaban, Maulik Shukla, Fran Supek, Sasha G Tetu, Sara Vieira-Silva, Alice R Wattam, David A Westfall, Mark Westoby
A synthesis of bacterial and archaeal phenotypic trait data. Scientific data 7 (1) (2020)
Marina Salvadores, Francisco Fuster-Tormo, Fran Supek
Matching cell lines with cancer type and subtype of origin via mutational, epigenomic, and transcriptomic patterns. Science advances 6 (27) (2020)
Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L Bruzos, Stefan C Dentro, Miguel G Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D Roberts, Sonia Zumalave, Paul A W Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A Wala, Keiran M Raine, Adam Butler, Sebastian M Waszak, Fábio C P Navarro, Steven E Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J Park, David C Wedge, Rameen Beroukhim, David Torrents, Jan O Korbel, Inigo Martincorena, Rebecca C Fitzgerald, Peter Van Loo, Haig H Kazazian, Kathleen H Burns, null null, Peter J Campbell, Jose M C Tubio, null null
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature genetics 52 (3) (2020)
David Mas-Ponte, Fran Supek
DNA mismatch repair promotes APOBEC3-mediated diffuse hypermutation in human cancers. Nature genetics 52 (9) (2020)
Marina Salvadores, David Mas-Ponte, Fran Supek
Passenger mutations accurately classify human tumors. PLoS computational biology 15 (4) (2019)
Matej Mihelčić, Tomislav Šmuc, Fran Supek
Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype. Scientific reports 9 (1) (2019)
Rik G H Lindeboom, Michiel Vermeulen, Ben Lehner, Fran Supek
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy. Nature genetics 51 (11) (2019)
Alexandra Avgustinova, Aikaterini Symeonidi, Andrés Castellanos, Uxue Urdiroz-Urricelqui, Llorenç Solé-Boldo, Mercè Martín, Ivan Pérez-Rodríguez, Neus Prats, Ben Lehner, Fran Supek, Salvador Aznar Benitah
Loss of G9a preserves mutation patterns but increases chromatin accessibility, genomic instability and aggressiveness in skin tumours. Nature cell biology 20 (12) (2018)
Vedrana Vidulin, Tomislav Šmuc, Sašo Džeroski, Fran Supek
The evolutionary signal in metagenome phyletic profiles predicts many gene functions. Microbiome 6 (1) (2018)
Jelena Repar, Fran Supek, Tin Klanjšček, Tobias Warnecke, Ksenija Zahradka, Davor Zahradka
Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria. Genetics 205 (4) (2017)
Rik G H Lindeboom, Fran Supek, Ben Lehner
The rules and impact of nonsense-mediated mRNA decay in human cancers. Nature genetics 48 (10) (2016)
Maria Brbić, Matija Piškorec, Vedrana Vidulin, Anita Kriško, Tomislav Šmuc, Fran Supek
The landscape of microbial phenotypic traits and associated genes. Nucleic acids research 44 (21) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fran Supek