Hannah Carter (H Carter)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Venues

Nature computational science

Nature communications

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

University of California, San Diego

Johns Hopkins University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California, San Diego Jul 01 2020

United States

Associate Professor :: Medicine

University of California San Diego - Jun 30 2020

United States

Assistant Professor :: Medicine

Education History

Johns Hopkins University

United States

PHD :: Biomedical Engineering

University of Louisville

United States

BSC :: Electrical and Computer Engineering

Publications

James V Talwar, Adam Klie, Meghana S Pagadala, Hannah Carter
GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies. Bioinformatics (Oxford, England) 40 (8) (2024)
Timothy J Sears, Meghana S Pagadala, Andrea Castro, Ko-Han Lee, JungHo Kong, Kairi Tanaka, Scott M Lippman, Maurizio Zanetti, Hannah Carter
Integrated germline and somatic features reveal divergent immune pathways driving response to immune checkpoint blockade. Cancer immunology research (2024)
James V Talwar, Adam Klie, Meghana S Pagadala, Hannah Carter
GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies. Bioinformatics (Oxford, England) 40 (8) (2024)
James V Talwar, Adam Klie, Meghana S Pagadala, Hannah Carter
GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies. Bioinformatics (Oxford, England) 40 (8) (2024)
JungHo Kong, Xiaoyu Zhao, Akshat Singhal, Sungjoon Park, Robin Bachelder, Jeanne Shen, Haiyu Zhang, Jimin Moon, Chang Ho Ahn, Chan-Young Ock, Hannah Carter, Trey Ideker
Prediction of immunotherapy response using mutations to cancer protein assemblies. Science advances 10 (38) (2024)
Kivilcim Ozturk, Rebecca Panwala, Jeanna Sheen, Kyle Ford, Nathan Payne, Dong-Er Zhang, Stephan Hutter, Torsten Haferlach, Trey Ideker, Prashant Mali, Hannah Carter
Interface-guided phenotyping of coding variants in the transcription factor RUNX1 with SEUSS. bioRxiv : the preprint server for biology (2023)
Victoria H Wu, Bryan S Yung, Farhoud Faraji, Robert Saddawi-Konefka, Zhiyong Wang, Alexander T Wenzel, Miranda J Song, Meghana S Pagadala, Lauren M Clubb, Joshua Chiou, Sanju Sinha, Marin Matic, Francesco Raimondi, Thomas S Hoang, Rebecca Berdeaux, Dario A A Vignali, Ramiro Iglesias-Bartolome, Hannah Carter, Eytan Ruppin, Jill P Mesirov, Jorge Silvio Gutkind
The GPCR-Gα s -PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure. Nature immunology (2023)
Shervin Goudarzi, Meghana S Pagadala, Adam R Klie, James V Talwar, Hannah Carter
Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains. bioRxiv : the preprint server for biology (2023)
Meghana S Pagadala, Timothy J Sears, Victoria H Wu, Eva Perez-Guijarro, Hyo Kim, Andrea Castro, James V Talwar, Cristian Gonzalez-Colin, Steven Cao, Benjamin J Schmiedel, Shervin Goudarzi, Divya Kirani, Jessica N Au, Tongwu Zhang, Maria Teresa Landi, Rany M Salem, Gerald P Morris, Olivier Harismendy, Sandip Pravin Patel, Ludmil B Alexandrov, Jill P Mesirov, Maurizio Zanetti, Chi-Ping Day, Chun-Chieh Fan, Wesley K Thompson, Glenn Merlino, J Silvio Gutkind, Pandurangan Vijayanand, Hannah Carter
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response. Nature communications 14 (1) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Andrea Castro, Aaron M Goodman, Zachary Rane, James V Talwar, Garrett M Frampton, Gerald P Morris, Scott M Lippman, Xinlian Zhang, Razelle Kurzrock, Hannah Carter
Autoimmune HLA Alleles and Neoepitope Presentation Predict Post-Allogenic Transplant Relapse. Journal of immunotherapy and precision oncology 6 (3) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Owen S Chapman, Jens Luebeck, Sunita Sridhar, Ivy Tsz-Lo Wong, Deobrat Dixit, Shanqing Wang, Gino Prasad, Utkrisht Rajkumar, Meghana S Pagadala, Jon D Larson, Britney Jiayu He, King L Hung, Joshua T Lange, Siavash R Dehkordi, Sahaana Chandran, Miriam Adam, Ling Morgan, Sameena Wani, Ashutosh Tiwari, Caitlin Guccione, Yingxi Lin, Aditi Dutta, Yan Yuen Lo, Edwin Juarez, James T Robinson, Andrey Korshunov, John-Edward A Michaels, Yoon-Jae Cho, Denise M Malicki, Nicole G Coufal, Michael L Levy, Charlotte Hobbs, Richard H Scheuermann, John R Crawford, Scott L Pomeroy, Jeremy N Rich, Xinlian Zhang, Howard Y Chang, Jesse R Dixon, Anindya Bagchi, Aniruddha J Deshpande, Hannah Carter, Ernest Fraenkel, Paul S Mischel, Robert J Wechsler-Reya, Vineet Bafna, Jill P Mesirov, Lukas Chavez
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma. Nature genetics (2023)
Adam R Klie, David Laub, James V Talwar, Hayden Stites, Tobias Jores, Joe J Solvason, Emma K Farley, Hannah Carter
Predictive analyses of regulatory sequences with EUGENe. Nature computational science 3 (11) (2023)
Su Xian, Magalie Dosset, Andrea Castro, Hannah Carter, Maurizio Zanetti
Transcriptional analysis links B cells and TERT expression to favorable prognosis in head and neck cancer. PNAS nexus 2 (3) (2023)
Su Xian, Magalie Dosset, Andrea Castro, Hannah Carter, Maurizio Zanetti
Transcriptional analysis links B cells and TERT expression to favorable prognosis in head and neck cancer. PNAS nexus 2 (3) (2023)
Meghana S Pagadala, Timothy J Sears, Victoria H Wu, Eva Perez-Guijarro, Hyo Kim, Andrea Castro, James V Talwar, Cristian Gonzalez-Colin, Steven Cao, Benjamin J Schmiedel, Shervin Goudarzi, Divya Kirani, Jessica N Au, Tongwu Zhang, Maria Teresa Landi, Rany M Salem, Gerald P Morris, Olivier Harismendy, Sandip Pravin Patel, Ludmil B Alexandrov, Jill P Mesirov, Maurizio Zanetti, Chi-Ping Day, Chun-Chieh Fan, Wesley K Thompson, Glenn Merlino, J Silvio Gutkind, Pandurangan Vijayanand, Hannah Carter
Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response. Nature communications 14 (1) (2023)
Andrea Castro, Hannah Carter
Mutagenic exposures shape immunotherapy responses. Nature cancer 1 (12) (2022)
Andrea Castro, Saghar Kaabinejadian, Hooman Yari, William Hildebrand, Maurizio Zanetti, Hannah Carter
Subcellular location of source proteins improves prediction of neoantigens for immunotherapy. The EMBO journal (2022)
Hannah Carter
Loss of RNA-Binding Protein RBMS1 Promotes a Metastatic Transcriptional Program in Colorectal Cancer. Cancer discovery 10 (9) (2021)
Ping Zhang, Isaac Kitchen-Smith, Lingyun Ivy Xiong, Giovanni Stracquadanio, Katherine Brown, Philipp H Richter, Marsha D Wallace, Elisabeth Bond, Natasha Sahgal, Samantha Moore, Svanhild Nornes, Sarah De Val, Mirvat Surakhy, David Sims, Xuting Wang, Douglas A Bell, Jorge Zeron-Medina, Yanyan Jiang, Anderson J Ryan, Joanna L Selfe, Janet Shipley, Siddhartha Kar, Paul David Peter Pharoah, Chey Loveday, Rick Jansen, Lukasz Filip Grochola, Claire Palles, Andrew Protheroe, Val Millar, Daniel V Ebner, Meghana S Pagadala, Sarah P Blagden, Timothy S Maughan, Enric Domingo, Ian P M Tomlinson, Clare Turnbull, Hannah Carter, Gareth L Bond
Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. Cancer research 81 (7) (2021)
Kivilcim Ozturk, Hannah Carter
Predicting functional consequences of mutations using molecular interaction network features. Human genetics (2021)
Su Xian, Magalie Dosset, Gonzalo Almanza, Stephen Searles, Paras Sahani, T Cameron Waller, Kristen Jepsen, Hannah Carter, Maurizio Zanetti
The unfolded protein response links tumor aneuploidy to local immune dysregulation. EMBO reports 22 (12) (2021)
Andrea Castro, Kivilcim Ozturk, Maurizio Zanetti, Hannah Carter
MHC-II constrains the natural neutralizing antibody response to the SARS-CoV-2 spike RBM in humans. bioRxiv : the preprint server for biology (2020)
Andrea Castro, Rachel Marty Pyke, Xinlian Zhang, Wesley Kurt Thompson, Chi-Ping Day, Ludmil B Alexandrov, Maurizio Zanetti, Hannah Carter
Strength of immune selection in tumors varies with sex and age. Nature communications 11 (1) (2020)
Jeffrey J Rodvold, Su Xian, Julia Nussbacher, Brian Y Tsui, T Cameron Waller, Stephen C Searles, Alyssa Lew, Pengfei Jiang, Ivan Babic, Natsuko Nomura, Jonathan H Lin, Santosh Kesari, Hannah Carter, Maurizio Zanetti
IRE1α and IGF signaling predict resistance to an endoplasmic reticulum stress-inducing drug in glioblastoma cells. Scientific reports 10 (1) (2020)
Pranjali Beri, Anna Popravko, Benjamin Yeoman, Aditya Kumar, Kevin Chen, Enio Hodzic, Alyssa Chiang, Afsheen Banisadr, Jesse K Placone, Hannah Carter, Stephanie I Fraley, Parag Katira, Adam J Engler
Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential. Cancer research 80 (4) (2019)
Viraj Deshpande, Jens Luebeck, Nam-Phuong D Nguyen, Mehrdad Bakhtiari, Kristen M Turner, Richard B Schwab, Hannah Carter, Paul S Mischel, Vineet Bafna
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect. Nature communications 10 (1) (2019)
Gonzalo Almanza, Jeffrey J Rodvold, Brian Y Tsui, Kristen Jepsen, Hannah Carter, Maurizio Zanetti
Extracellular vesicles produced in B cells deliver tumor suppressor miR-335 to breast cancer cells disrupting oncogenic programming in vitro and in vivo. Scientific reports 8 (1) (2018)
Wei Zhang, Ana Bojorquez-Gomez, Daniel Ortiz Velez, Guorong Xu, Kyle S Sanchez, John Paul Shen, Kevin Chen, Katherine Licon, Collin Melton, Katrina M Olson, Michael Ku Yu, Justin K Huang, Hannah Carter, Emma K Farley, Michael Snyder, Stephanie I Fraley, Jason F Kreisberg, Trey Ideker
A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. Nature genetics 50 (4) (2018)
D O Velez, Brian Y Tsui, T Goshia, C L Chute, A Han, Hannah Carter, S I Fraley
3D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry. Nature communications 8 (1) (2017)

Hannah Carter.css-eqlu8i{font-size:small;padding-left:4px;} (H Carter)

Publication Activity (10 Years)

Top Topics

Top Venues

Hannah Carter (H Carter)